RNA id: TU3182


Basic Information

Item Value
RNA id TU3182
length 442
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G2263
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6771355 ~ 6775250 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTCCTCTCCACGGAAATCTTTAGTAAAAGGCGAAAGATTTatacgatctgaagagaaacaaGAGTGTATTGGAGTGTTGCTGTGAAGTGACCGACCAGATTCTCCGCCTCATGTTCCTCACTTATGGTCCAGTACCTGAGTACCTGAGCTTTTCTGGGGGTGGGGGGCTCCTAAGACTTTGTGCTAGGGAGAAGCGTATACTATGTGCTTATAGTGTCACCTATACATGCTTATTTGGTTTACGTTATGTTTCCTTGAATGTTATGGTCACTATGTCaccttttcttgatttttgtctgggtaTGTGGTGATGACGAAAGGTAGGTTCGGGGGGCGTGTTCATGTTATAAATGGTGTTGTATATATACcgttaaaaatgaataaaacttgTATTCATAAGAACTATCAAagttacttttagttaactTAACTGTTAAGGCC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG:

id description
ko00630 Glyoxylate and dicarboxylate metabolism
ko00140 Steroid hormone biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3187 lncRNA upstream 15616 6754529 ~ 6755739 (+) True G2267
TU3183 lncRNA upstream 38682 6732115 ~ 6732673 (+) True G2264
TU3178 lncRNA upstream 46671 6724440 ~ 6724684 (+) True G2260
TU3174 lncRNA upstream 77144 6693912 ~ 6694211 (+) True G2258
TU3173 lncRNA upstream 78984 6692141 ~ 6692371 (+) True G2257
TU3192 lncRNA downstream 32554 6807804 ~ 6808666 (+) True G2272
TU3194 lncRNA downstream 35500 6810750 ~ 6811453 (+) True G2274
TU3196 lncRNA downstream 39758 6815008 ~ 6815992 (+) True G2276
TU3198 lncRNA downstream 49114 6824364 ~ 6824564 (+) True G2278
TU3199 lncRNA downstream 53142 6828392 ~ 6828667 (+) True G2279
XM_039810088.1 mRNA upstream 7558 6727928 ~ 6763797 (+) False LOC120564849
XM_039810078.1 mRNA upstream 7558 6729858 ~ 6763797 (+) True LOC120564849
XM_039810077.1 mRNA upstream 48397 6695584 ~ 6722958 (+) True LOC120564833
XM_039815363.1 mRNA upstream 112036 6591436 ~ 6659319 (+) True LOC120568096
XM_039810365.1 mRNA upstream 242407 6510225 ~ 6528948 (+) True LOC120565047
XM_039810376.1 mRNA downstream 462821 7238071 ~ 7239593 (+) True LOC120565053
XM_039815515.1 mRNA downstream 614849 7390099 ~ 7437258 (+) True LOC120568176
XM_039819062.1 mRNA downstream 837673 7612923 ~ 7640109 (+) True pus10
XM_039819288.1 mRNA downstream 918335 7693585 ~ 7703831 (+) True LOC120570741
XM_039807381.1 mRNA downstream 943706 7718956 ~ 7743994 (+) True LOC120563246
TU2759 other upstream 236985 6532441 ~ 6534370 (+) True G1973
TU2728 other upstream 334491 6428831 ~ 6436864 (+) False aftpha
TU2729 other upstream 334491 6428831 ~ 6436864 (+) False aftpha
XR_005641746.1 other upstream 369315 6385602 ~ 6402040 (+) False LOC120573424
XR_005640968.1 other downstream 22216 6797466 ~ 6797580 (+) True LOC120569765
XR_005640972.1 other downstream 23240 6798490 ~ 6798604 (+) True LOC120569778
XR_005640981.1 other downstream 24325 6799575 ~ 6799688 (+) True LOC120569812
XR_005640974.1 other downstream 26152 6801402 ~ 6801516 (+) True LOC120569789
XR_005640954.1 other downstream 26755 6802005 ~ 6802119 (+) True LOC120569727

Expression Profile