RNA id: TU3589


Basic Information

Item Value
RNA id TU3589
length 267
lncRNA type intronic
GC content 0.39
exon number 2
gene id G2572
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8048236 ~ 8048523 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtTGTCttgttattctcattttcattgaaaaatgtgtgatttttgcgagaaTCGGTACCAAAAGAAagatttttaagataatttttttgggggcttttccctttattcgatagtgacagtggatagacagaacaggggatgacacgcagcaaagggccgcaggtcagattcaaacctgggccgctgcaaaggactcggCCTGCATGGGGCGCACAtgtgcattgtgttttgttgggtttatcTTTTCGTTGTTTAATGTGTATAGGG

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3586 lncRNA upstream 30328 8017443 ~ 8017908 (+) True G2569
TU3583 lncRNA upstream 69944 7977959 ~ 7978292 (+) True G2566
TU3582 lncRNA upstream 71739 7976161 ~ 7976497 (+) True G2565
TU3581 lncRNA upstream 72355 7975669 ~ 7975881 (+) True G2564
TU3579 lncRNA upstream 73202 7974273 ~ 7975034 (+) True G2562
TU3591 lncRNA downstream 6976 8055499 ~ 8078861 (+) True G2574
TU3596 lncRNA downstream 18740 8067263 ~ 8068163 (+) True G2579
TU3595 lncRNA downstream 19962 8068485 ~ 8071378 (+) True G2578
TU3597 lncRNA downstream 23084 8071607 ~ 8195920 (+) False G2580
TU3598 lncRNA downstream 23084 8071607 ~ 8195985 (+) True G2580
XM_039810790.1 mRNA upstream 16372 7979869 ~ 8031864 (+) True nup133
XM_039804030.1 mRNA upstream 135086 7900622 ~ 7913150 (+) True ifngr1
XM_039804026.1 mRNA upstream 135175 7900622 ~ 7913061 (+) False ifngr1
XM_039810942.1 mRNA upstream 159862 7876002 ~ 7888374 (+) True LOC120565283
XM_039805410.1 mRNA upstream 174636 7866252 ~ 7873600 (+) True LOC120562006
XM_039804264.1 mRNA downstream 4000 8052523 ~ 8064500 (+) True ccsapa
XM_039804272.1 mRNA downstream 4000 8052523 ~ 8064500 (+) False ccsapa
XM_039800252.1 mRNA downstream 60820 8109343 ~ 8115194 (+) True LOC120558905
XM_039800295.1 mRNA downstream 162548 8211071 ~ 8215041 (+) True LOC120558930
XM_039800189.1 mRNA downstream 324334 8372857 ~ 8380700 (+) True LOC120558872
TU3574 other upstream 99983 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 348696 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 834680 7213485 ~ 7213556 (+) True trnae-uuc_49
unassigned_transcript_50 other upstream 835202 7212963 ~ 7213034 (+) True trnae-uuc_48
unassigned_transcript_49 other upstream 836231 7211934 ~ 7212005 (+) True trnae-uuc_47
TU3609 other downstream 41290 8089813 ~ 8091505 (+) True G2590
TU3639 other downstream 361334 8409857 ~ 8410935 (+) False LOC120565323
TU4189 other downstream 842925 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 1423577 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 1443786 9492309 ~ 9501129 (+) False LOC120559285

Expression Profile