RNA id: XM_039800295.1


Basic Information

Item Value
RNA id XM_039800295.1
length 1502
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC120558930
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8211071 ~ 8215041 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATAAGGCGGCAGGCGCAGCACTCCCCCACTCCACTGCTGTATGCTTCCGCTCGTTTTCCTGCGGACCACTCGCCGGCAGTGAACATCTCACACACCTCAAATTAATGTTCTGCTTTTATCAGCGGAAATAatccacacaaaacataaagGTTGATTTAAACTCGAAACACGTGGTTTCATTAGTATATTTAGTCACtaaattatgtattttctcTTCAGGCTATAGGTCTAGGCTATTTTCGGTCGTGAAGAAGCGGGAGGGGCCATAGTAAGTAGAGCTTCAAAACATATTCAGGGGAGCTGAGGAATCTCCTCAGTCAGTTGAATACATTTCTCCCCAGAAGTGATGAAGACGTTGACTTCTCTCCTGGACGTGATGATGAagatacttttaacaacttttctcCTGTTTCCTGAAACTATCCTGGGAGAGTATGGTGTGGTGTGTCCGACTCTGGTCGAGGCAGTAGAAGGTGATGCTGTTACTCTGGGGGGTTCTCTGAGTCCTCCGCTCAACTTGACTCCTTACACGTTGGATCTGAAGAGACTTGACCTCCATGACGATCTGGTCCACGTCTACCGACATGGACAGGACCATTTCCCTCCACAGAGTCCTCACTACAGAGGCAGAACAACTCTGATCCATGAAGACCTGATCGGAGGAACCGTGACGCTGCACATCTCCTCAGTAAATCTGTCTGACTCTGGACCGTATGAAGTCTACGTCCCAGACCTGAAAGCCCGCTGTGAATTTTACCTCACTGTTGATGGTGAGAACAGGAAGACTGCCCGTGCTGTTatccttccctctcttctcctcctcggGACtctcctggttctggttctgatgAGAGGAAAGATCAagAGTTGCATCGAGAGGCtcagaggaaggaaggagcaaGAACCAGAGAACtccctgaacctgaacctggaAGCAACCGAAGACCTGGAGAGATCTGTAGGAAATGTCGTCTGAGAGCTTTAGTGAAGTTCGGCCATCAACCAGTTGTAGCAGCCCTTGGAtccaaaaagacaacaaacaaaaaacataaccGAACAAAATCATATTAACAACTTACAGGATTGTTTATTACACGGCTGCTCACTAAAGAAATcaaacattttacacattttacacaaatattgatttaaaggcCGAGCTGCAGGgttcattttacaacaaatttgCGCAACTTGCTTGTtggtaaataaatgtaaactgttttccgttgtatttgatgtttttgggtatcacaaaacagaatataatatgaaaaagtAGGTACTATTTTACAGAGGTTTGCTATGATTCTcctttcccccacaatgcattgcattacGTCCCCTTGGGGAGACGACAGACCAAAGCCCGCCTTGAGACCCATATTTTTTTTAGTTGTCATTTAGTTACCAGACGGAGAGGACTCCTTTTAGTACCCGGGGTATTCCTGCATGTACTGTAACTATGCtgtacttcaatacaactgtaaggtacttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3598 lncRNA upstream 15086 8071607 ~ 8195985 (+) True G2580
TU3597 lncRNA upstream 15151 8071607 ~ 8195920 (+) False G2580
TU3626 lncRNA upstream 17303 8112415 ~ 8193768 (+) True G2598
TU3655 lncRNA upstream 69329 8137996 ~ 8141742 (+) True G2612
TU3652 lncRNA upstream 76719 8132052 ~ 8134352 (+) True G2609
TU3676 lncRNA downstream 16587 8231628 ~ 8253099 (+) True G2628
TU3679 lncRNA downstream 25699 8240740 ~ 8286574 (+) True G2630
TU3682 lncRNA downstream 25699 8240740 ~ 8241551 (+) False G2630
TU3625 lncRNA downstream 29255 8244296 ~ 8270545 (+) False G2598
TU3667 lncRNA downstream 34471 8249512 ~ 8250570 (+) True G2620
XM_039800252.1 mRNA upstream 95877 8109343 ~ 8115194 (+) True LOC120558905
XM_039804264.1 mRNA upstream 146571 8052523 ~ 8064500 (+) True ccsapa
XM_039804272.1 mRNA upstream 146571 8052523 ~ 8064500 (+) False ccsapa
XM_039804256.1 mRNA upstream 161684 8038319 ~ 8049387 (+) True acta1a
XM_039810790.1 mRNA upstream 179207 7979869 ~ 8031864 (+) True nup133
XM_039800189.1 mRNA downstream 157816 8372857 ~ 8380700 (+) True LOC120558872
XM_039811024.1 mRNA downstream 186674 8401715 ~ 8415076 (+) True LOC120565323
XM_039803257.1 mRNA downstream 348007 8563048 ~ 8575327 (+) True mrpl45
XM_039816351.1 mRNA downstream 402342 8617383 ~ 8643702 (+) True socs7
XM_039816357.1 mRNA downstream 402342 8617383 ~ 8643702 (+) False socs7
TU3609 other upstream 119566 8089813 ~ 8091505 (+) True G2590
TU3574 other upstream 262818 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 511531 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 997515 7213485 ~ 7213556 (+) True trnae-uuc_49
unassigned_transcript_50 other upstream 998037 7212963 ~ 7213034 (+) True trnae-uuc_48
TU3639 other downstream 194816 8409857 ~ 8410935 (+) False LOC120565323
TU4189 other downstream 676407 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 1257059 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 1277268 9492309 ~ 9501129 (+) False LOC120559285
TU4435 other downstream 1556534 9771575 ~ 9772935 (+) True G3148

Expression Profile