G2598


Basic Information

Item Value
gene id G2598
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8112415 ~ 8270545 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU3625
TTTAGTATTCCGGGTATTCCTGCATGTACTGTAACTATgccgtacttcaatacaactgtaaagtacttttaattgagtattttcattttctcctacttgcctattaTACGTTTTACTTCTCTATTTCTATAGCCTAGCATTGTATGTATCCACCTTAACCCGGGTTAGGTTGGGACTCTTAATATCAGGGACATAAAGAACGCTGCTTTCCATCCTTTAACAACATTCAAAGTAACTTGAATCTCACACCTTAACCCGGGTTAGATCACCTAGAAGCTTTGGCCCTTATTTTTACCGTCTGTGGCCTTAACCTCACCGTGAGTTGGGACTCTTAAAGGAGAAAATaattcaacacgtagctctgttgtttgtggtCACGGAGgtctgtcagtagcgagaaaactAAACTAATCAGCGTTGCCTACACCGAGTTCTCCTCCTGCTCCagttagcacccaggaggctgaaacggGGCAGGTTTTAAACCTGCTTTTAGCCTCTGAACATGTTGgagatgtcattacaagtgcctagaCATGTGAACTGATTCCttctgagtgaacacagtgaatatgactgcagtagatgtgaaagaaatgcataaaagtcgTGTTAATTCAGCCAGTGCACATACCTCTGTTTAGTTCTGGTGTTCTGGTGAAGTCCACACAAGTCGAGTGTTGAACTCATACAATCCATTATTCCAAAAACATATCAGGGACATAATTAAAGCTGCTTTCTTCAACAAACTATGTGAAGGCTTCAGCTCCTTTATGACTTTATCTCTTTAATATCTGGGGCTGAACCAGGCCGTCAGGGGAAATGGTGACAATCAGTGAACACAACTGCTGGATGATGACACAGGATTTTATTTGCTGCACTTTCTTTTGGCTTTTGTTGATGTTGCACTTTGTTAAAACATATTGTATTTGTCTGATTCGTACTTGGATGTATGAAGCCAAACTTAATGTTTAACTGTAGAAATGATTCCACCTTAAATCTTATTTTTAAATGCCTACATGCTCAAGCTGCTTCTCCCTTAACCGAATGCATTTGTTACCAGGCAC
>TU3626
AGCAGCACATTCTTCATTTTAGGAATAGTTGGAGAACTGAATGTAAACCATCAACTCTGGTCCTTCAGAGGtgttaaaggtttttttttttttttttttttttttttctaggagAGCATTCGTCTCACCTGTCCTCAGACCATAGAGGCAGCAGAAGGAGATGATGTCATTATACAGTGTGGTCTGGACCCCCCCGTCGACTTGTCTGACTACACGCTGGATGTGGCGAGACTCGACCTCGGTGACGATGATGGTGATGTCTACTGCTATCGAAGAGGAAAGTACCAACAGGATGACCAGATGGATCGATACAGAGACAGAACAACTCTCAACCATGAAGACCTGATCAGAGGCATCGTGACTCTGACTATCTCCTCAGTAACTCTGTCTGATAGCGGAAAGTACAAAGTCTACATCCCAGACCTTAGACACAGTTTTATCATTAACATCACTGTTGGCTCTGCAAAGGAGGAATCTGTCTGGATAATAGTGCTGTCCAGTGTCTGTGTTGGTGGTGCTGTTGGTGTTCTTCTTCTCCTGGTGAAACGTGGAATCATCTggaagaagaggaaagaatCAGAGACGAGGTCAGACAACTTGATAGTTTAGAGACACCTGAGGACCCCGACCACAGAGGAGGACGGAGACCCTCACAGCGCTGCAGGACATGGTCTGAGAGAGTTGGTGGTCCATAccagacctgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttattgtttcaatcagtgtgtctgtttttggtaAAGCACACTGATTTCCTATTCTGTGTGAAACCTCAGGAAGCAGTTGCTGGTGGAGGTAAAACTGAGGTTAACGTCACATTTCGGCACATGGCTTTTGGTGTCCCTGTGCACCCTGGGAGCTTGCATCCTCCCTTTTTCTCAGCCATGACAATCCAGTGAGCTGTAGCATCCAGGCACACATCAGGGACTGGACTTGGAGTAGGGGGGCCTTTTTCGGCCTTTTACACCTACGCGCAATAAAGAGAGGATATGTTGTATCACAATAAGACAATTGATCAAattgtaaatataaaaacaaaaaataatgtcCCTCCTTAATTTTTTCCCCCCTGATGTGGCCCTATAGCATTAACAGGGACCCTATGACAACAACATTCTTTGGGGATTGATATTGTTTTAATATAGGCCTACTATAGAGATAGGCTGTATTAttggcaatgaataaagagtTGTGATTAGCTGCTAAGTTAACCCTTTCTTGTATTTCCCTCGTTCACTCTAGCTAGACTTTAGTTTCCcatagcaaaccaaaatatcctCCTTCCTTTACCTCCAGAAAACGTAGCTAAAggtaagcaggtcattaaaaacaacGTACAATTTCACTGTGTCAGACTAGGTGTAATCAATCTTCATTTCACCAttagcgtgcgtgcgtgcgtgcgtgcgtgtgtagttcagaccaaagagtagTGATGAGACGAGATGAATCCTTCAGGTACTGCAAGCGCCGGTCTGCAacgctctgaaagctgccagttcgcGGTGCATCATCTTGATAGCGCAACGACTCTCTGTACTTCTGTCTTACTTCCGACTTTTCGGCTATTTATTTTGTAGctatatatatcatttgttgtgtCTAAATATCAATATGGATAAAtcaaattgttattgttgttcttattgttatttaggggggcttaggaacattttggggtagcttcagcccccctaaaataggcctaacgatGTCCCTGCTACTGATAGCCGTCCAGATGTGGAATTTATCAGAGAAACGAGCCATCAGGACTAACAGGACCCTCTTTAAAGGACTCATCAGAGCAGAAAGTCACAGTCCTAAAAACTAAACCAGACTCTtaggccctatcttgcactcagcgcaattgcctttgtacaccgacgcatgtatcattcctattttgcacccgacgcacagcagacttttccctctacagacgcacgtcggtaaattagggaatgtatttgcgctcctcggggcggttcagcgaaaagaggaggcgtgttccggcgaaACGTTACTttgtcctattttgcagtttcagaaaacaattctgccattgaccaggaaaaacctggtctaaagtcagtggcgcgttattcagatgctattttaggggcgcatgcttggccataatgtagtgtgtgcacaaagcgcatacacttctctcatctaaatggatgcagcagttcccatttttgcaaagcatacataattacaaaggaaaatattactgaaaatgcgcttcaggtgtttggataggtcaggaggctacagtacagtcctcaaaaagtcgcagcattctttgtggcttgctgtgttttacacatttccatgaatcatggatgtgttgatgacataaatgaggaaatattagaggacttaaggagatgtgatgttgaactacggcgggatctggtc
>TU3633
GATGGTGAGAACAGGAAGACTGCCCGTGCTGTTatccttccctctcttctcctcctcggGACtctcctggttctggttctgatgAGAGGAAAGATCAagAGTTGCATCGAGAGGCtcagaggaaggaaggagcaaGAACCAGAGAACtccctgaacctgaacctggaAGCAACCGAAGACCTGGAGAGATCTGTAGGAAATGTCGTCTGAGAGCTTTAGTGAAGTTCGGCCATCAACCAGTTGTAGCAGCCCTTGGAtccaaaaagacaacaaacaaaaaacataaccGAACAAAATCATATTAACAACTTACAGGATTGTTTATTACACGGCTGCTCACTAAAGAAATcaaacattttacacattttacacaaatattgatttaaaggcCGAGCTGCAGGgttcattttacaacaaatttgCGCAACTTGCTTGTtggtaaataaatgtaaactgttttccgttgtatttgatgtttttgggtatcacaaaacagaatataatatgaaaaagtAGGTACTATTTTACAGAGGTTTGCTATGATTCTcctttcccccacaatgcattgcattacGTCCCCTTGGGGAGACGACAGACCAAAGCCCGCCTTGAGACCCATATTTTTTTTAGTTGTCATTTAGTTACCAGACGGAGAGGACTCCTTTTAGTACCCGGGGTATTCCTGCATGTACTGTAACTATGCtgtacttcaatacaactgtaaggtacttttaatggagtattttcattttctcctacttgcctattgtacgttttacttctcTATTTCTATAGCTttgcataTGTATGTATCCACCTTAACCCGGGTTAGGTTGGGACTCTTAATATCAGGGACATAAAGAACGCTGCTTTCCATCCTTTAACAACATTCAAAGTAACTTGAATCTCACACCTTAACCCGGGTTAGATCACCTAGAAGCTTTGGCCCTTATTTTTACCGTCTGTGGCCTTAACCTCACCGTGAGTTGGGACTCTTAAAGGAGAAAATaattcaacacgtagctctgttgtttgtggtCACGGAGgtctgtcagtagcgagaaaactAAACTAATCAGCGTTGCCTACACCGAGTTCTCCTCCTGCTCCagttagcacccaggaggctgaaacggGGCAGGTTTTAAACCTGCTTTTAGCCTCTGAACATGTTGgagatgtcattacaagtgcctagaCATGTGAACTGATTCCttctgagtgaacacagtgaatatgactgcagtagatgtgaaagaaatgcataaaagtcgTGTTAATTCAGCCAGTGCACATACCTCTGTTTAGTTCTGGTGTTCTGGTGAAGTCCACACAAGTCGAGTGTTGAACTCATACAATCCATTATTCCAAAAACATATCAGGGACATAATTAAAGCTGCTTTCTTCAACAAACTATGTGAAGGCTTCAGCTCCTTTATGACTTTATCTCTTTAATATCTGGGGCTGAACCAGGCCGTCAGGGGAAATGGTGACAATCAGTGAACACAACTGCTGGATGATGACACAGGATTTTATTTGCTGCACTTTCTTTTGGCTTTTGTTGATGTTGCACTTTGTTAAAACATATTGTATTTGTCTGATTCGTACTTGGATGTATGAAGCCAAACTTAATGTTTAACTGTAGAAATGATTCCACCTTAAATCTTATTTTTAAATGCCTACATGCTCAAGCTGCTTCTCCCTTAACCGAATGCATTTGTTACCAGGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3625 False 1067 lncRNA 0.42 2 8244296 8270545
TU3626 True 2487 lncRNA 0.46 4 8112415 8193768
TU3633 False 1731 lncRNA 0.41 3 8214193 8270545

Neighbor

gene id symbol gene type direction distance location
ccsapa NA coding upstream 47915 8052523 ~ 8064500 (+)
acta1a actc1a,act2,zgc:86709,LOC105024319,LOC102689871,LOC100534413 coding upstream 63028 8038319 ~ 8049387 (+)
nup133 nup133 coding upstream 80551 7979869 ~ 8031864 (+)
ifngr1 NA coding upstream 199265 7900622 ~ 7913150 (+)
LOC120565283 NA coding upstream 224041 7876002 ~ 7888374 (+)
LOC120558872 NA coding downstream 102312 8372857 ~ 8380700 (+)
mrpl45 mrpl45 coding downstream 292503 8563048 ~ 8575327 (+)
sp2 sp2 coding downstream 377514 8648059 ~ 8669290 (+)
si:ch211-69b7.6 NA coding downstream 434322 8704867 ~ 8714096 (+)
mrpl4 mrpl4,LOC102794479 coding downstream 450187 8720732 ~ 8732510 (+)
G2582 NA non-coding upstream 30929 8079225 ~ 8081486 (+)
G2574 NA non-coding upstream 33554 8055499 ~ 8078861 (+)
G2578 NA non-coding upstream 41037 8068485 ~ 8071378 (+)
G2579 NA non-coding upstream 44252 8067263 ~ 8068163 (+)
G2572 NA non-coding upstream 63892 8048236 ~ 8048523 (+)
G2646 NA non-coding downstream 19351 8289896 ~ 8439252 (+)
G2685 NA non-coding downstream 189542 8460087 ~ 8463648 (+)
G2687 NA non-coding downstream 196516 8467061 ~ 8495618 (+)
G2670 NA non-coding downstream 200009 8470554 ~ 8509264 (+)
G2689 NA non-coding downstream 204352 8474897 ~ 8477720 (+)
G2590 NA other upstream 20910 8089813 ~ 8091505 (+)
G2557 NA other upstream 164162 7941547 ~ 7948253 (+)
G2530 NA other upstream 412875 7699265 ~ 7699540 (+)
G1973 NA other upstream 1578045 6532441 ~ 6534370 (+)
aftpha LOC102296338,LOC102796226,LOC101483123,LOC102200161 other upstream 1675198 6407400 ~ 6437217 (+)
LOC120565323 NA other downstream 131170 8401715 ~ 8415076 (+)
socs7 socs7 other downstream 346838 8617383 ~ 8643702 (+)
abcc10 abcc10,LOC107102248 other downstream 399626 8670171 ~ 8702455 (+)
zbtb45 zbtb45,LOC102796714,LOC102207372,LOC100704009,LOC104952775,LOC103470204,LOC101487628 other downstream 620770 8891315 ~ 8911908 (+)
G3091 NA other downstream 1201555 9472100 ~ 9531976 (+)

Expression


Co-expression Network