RNA id: TU3676


Basic Information

Item Value
RNA id TU3676
length 445
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G2628
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8231628 ~ 8253099 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cAGCATGCAGCTTACCAACAGATATGTTAATAACAGAATGGGCTCGCAGCTTTTTGATGTAGACTTTGTATGGACCACTATCAGACAGAGTTACTGAGGAGATCTTCAGAGTCACGATGCCTCTGATCAGGTCTTCATGGTTGAGAGTTGTTCTGTCTCTGTATCGATCCATCTGGTCATCCTGTTGGTCCTTTCCTCTTCGATAGCAGTGGACATCACCATCATCGTCACCGAGGTCGAGTCTCGCCACATCCAGCGTGTAGTCAGACAAGTCGACGGGGGGGTCCAGACCACACTGTATAATGACATCATCTCCTTCTGCTGCCTCTATGGTCTGAGGACAGGTGAGACGATGCTCTCCTGGAGAAACAGACATAACATTCACACAGCTTTAACACCTCTGAAGGACCAGAGTTGATGGTTTACATTCAGTTCTCCAACTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3598 lncRNA upstream 35643 8071607 ~ 8195985 (+) True G2580
TU3597 lncRNA upstream 35708 8071607 ~ 8195920 (+) False G2580
TU3626 lncRNA upstream 37860 8112415 ~ 8193768 (+) True G2598
TU3655 lncRNA upstream 89886 8137996 ~ 8141742 (+) True G2612
TU3652 lncRNA upstream 97276 8132052 ~ 8134352 (+) True G2609
TU3659 lncRNA downstream 35497 8288596 ~ 8297950 (+) False G2614
TU3700 lncRNA downstream 36797 8289896 ~ 8439252 (+) True G2646
TU3745 lncRNA downstream 206988 8460087 ~ 8463648 (+) False G2685
TU3746 lncRNA downstream 206988 8460087 ~ 8463648 (+) True G2685
TU3748 lncRNA downstream 213962 8467061 ~ 8495618 (+) True G2687
XM_039800295.1 mRNA upstream 16587 8211071 ~ 8215041 (+) True LOC120558930
XM_039800252.1 mRNA upstream 116434 8109343 ~ 8115194 (+) True LOC120558905
XM_039804264.1 mRNA upstream 167128 8052523 ~ 8064500 (+) True ccsapa
XM_039804272.1 mRNA upstream 167128 8052523 ~ 8064500 (+) False ccsapa
XM_039804256.1 mRNA upstream 182241 8038319 ~ 8049387 (+) True acta1a
XM_039800189.1 mRNA downstream 119758 8372857 ~ 8380700 (+) True LOC120558872
XM_039811024.1 mRNA downstream 148616 8401715 ~ 8415076 (+) True LOC120565323
XM_039803257.1 mRNA downstream 309949 8563048 ~ 8575327 (+) True mrpl45
XM_039816351.1 mRNA downstream 364284 8617383 ~ 8643702 (+) True socs7
XM_039816357.1 mRNA downstream 364284 8617383 ~ 8643702 (+) False socs7
TU3609 other upstream 140123 8089813 ~ 8091505 (+) True G2590
TU3574 other upstream 283375 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 532088 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 1018072 7213485 ~ 7213556 (+) True trnae-uuc_49
unassigned_transcript_50 other upstream 1018594 7212963 ~ 7213034 (+) True trnae-uuc_48
TU3639 other downstream 156758 8409857 ~ 8410935 (+) False LOC120565323
TU4189 other downstream 638349 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 1219001 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 1239210 9492309 ~ 9501129 (+) False LOC120559285
TU4435 other downstream 1518476 9771575 ~ 9772935 (+) True G3148

Expression Profile