RNA id: XM_039801030.1


Basic Information

Item Value
RNA id XM_039801030.1
length 2296
RNA type mRNA
GC content 0.51
exon number 16
gene id LOC120559363
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9590493 ~ 9629483 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGTGGAGGTGACTGGACGggcagaggaggaggtgggtCAGCGGGCGAAATTTCACATGAACCGGCAGCCTCACCGGCGAGGTGTCAGCAGTAAATGAAGCCTGGAGACTTGTCGTCGTGTCTGGTGTGACAGTTTCACTTTTATTCGGAGTGTGTGCCGATAATGCTGCACGGTAAAACCTGATGAAGTTCACCAGAGATATCTGCCGGTTGCTGGGCTTAGGAGGCGGGGGGCCAtgtgaggaggagatggaggttCAGAATGGAGCGCCTGACTTGACGGACAGAAGAAAAGACCAAGGCTCATCACAGCAGGCAATGCTGAACAGTGAGGAGGGTTTGGATGATGAGGAGAGAACAAGAAGGAGAGCCGAGAGGAGGAGAGCTAAAAGGAAAAGGCAGAAAGAACGGAAGAAACTGGAGAGGATGGAGGACGCTTCAGAACAGgaagaggaagtggCTGGAGCGGTGTCAGAGAGTGACAGCGAGGAGGAATTGAAAGAGGAGGTGAAGGAATGGACCGCCGTTCGACCCAGAAACAAATGCAACCCTGAATCAGTCCCTGACCTGGTGACCTCAGAGAACAAGAGCAACGGCCAGCCGCCCCACAGGCCCTCGGAGGAGGAGCCCGAGTGGGATGTCAGCAGTGCATTCGTGGCCAACGCTGCCAGCCACATCAAAGTCAAAGCTCTGAAGAACAGAGCAATACTGATCTCCAGAGAGAACAAAGAGAACGAGGCCAGGAGCagccagGTAGAAAGCACAGAAgaaatgaagaggaggggggagtCTCTGACAGTGCAGGGCattcagatgtttgagcaagGCCAGTACAGCCAGGCAGTGGACATGTTTACAGAAGCCATCTACTGCGACCCGAGGGACCACAGGTTCTATGGAAACCGCTCTCACTGCTATTGGGTTCTGGAGCAGTACTCCTCCGCCCTCACGGACGCTCAGAGGTCCATCCAGCTGGCTCCTTATTGGCCGAAGGGATACTTCCGTAAGGGGTGTGCTCTGATGGGGTTAAAGcgGTACAGTGAGGCGGAGGCAGCCATGGAGCAGGTGCTGAAGTTGGATCAGCGCTGTAAGGAAGCATCCGGTAAACTCTTTACCTGCCGGCTCCTGCAGCTCATGGAGTTGGGTTTTGAGGAAGAGCAGAGTAAACTGCTGCTGGAGAAGTTCACCACCGTTCAGGCGGCCACCACCTCACCCGAGGCCAAAACACTAAAGCACACATCTCAGCAGGACCAGAGTGGGAGCTGTCGCTCTCTGTGGGTTGGGAACATTACAGTGGAGGTTACAGAGACAGACCTCTTGGATctcttcaaaatGTTTGGTGAAATAGAGAGCATCAGAGTTCTTCATGAGCGTTTCTGTGCCTTCGTCAACTTCAAGAATGCCAACATGGCTGCCAAAGCCCTGGATAAGCTGCAGGGTGTGGAGCTGGGCAGCAGCAAACTGGTGATGAGGTACCCAGATCGTTGGATCCAGCGCCCCCTGCCGCCCATCCAAAAGAACAACACCAGCCTCAGCTCCAGCGCTGCGGGAACACTGCCGAGCTCAGCTGCTATAGGGTCCAGACGGTGTGTACCTATATATGGAGATGAGTGCTTCTACTGGCGGACCACAGGCTGTTTCTATGGCGACAAGTGCCGTTTCAAACACATACCAGACCAACAAGGTCGAGACAAGAAACCATGGCATCCCTAACTGCGTCCCCTGCCCTCCCAACCCCAGCATCAGGACGCATTAATGAAGGATTTAGACGGGGAGCGGGAACAAGAAGGACAGCGAGCATGGAGTGGACAcgtgaacgtgtgtgtgtgggaaagaGAGAGTCAGATATGGTATGTATGTGATAGCCAAAGTCAGAGGTTGGGTCCCTGACACGATGAGGTTAGAACGTCAAGAGCCCTAACCTCAGAAAGACGCTTAAAGAATTCACATGATAACGCAGAACTTCTGATGTAAGGAAGTCCTCCGAGGAATTTAAATCATTGGAAGCGTGGATAAGCGTCTCTTGGCTCCATTTGGATCCGATAAGGTTTCTGCGTGGAGATCTCTGCTCTGTGGCAAGTATCAGTCATCTGTCATCAGAAGGATTTACTTGGACGAATACGTTTGGTTGAACCATATCGGGAACACTTCTCAAAACCTAAGCTCAGTGACAAACTTTATCTCTTCAACACCCCTCTTGGATTACATTAAAGTCAAGagttatttttcatattttttaaagagcatttcaaatgtatttgaaaaaaaaaacaataaatcaacTAAATTAAACACA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4341 lncRNA upstream 58517 9525558 ~ 9531976 (+) True G3091
TU4339 lncRNA upstream 65053 9502426 ~ 9525440 (+) True G3090
TU4338 lncRNA upstream 66343 9518271 ~ 9524150 (+) True G3089
TU4304 lncRNA upstream 74348 9467617 ~ 9516145 (+) True G3069
TU4331 lncRNA upstream 93711 9407641 ~ 9496782 (+) True G3085
XR_005639330.1 lncRNA downstream 8575 9638058 ~ 9639141 (+) True LOC120559601
XR_005639310.1 lncRNA downstream 10594 9640077 ~ 9643954 (+) True LOC120559541
XR_005639313.1 lncRNA downstream 50534 9680017 ~ 9683099 (+) True LOC120559553
TU4454 lncRNA downstream 211305 9840788 ~ 9842085 (+) True G3163
XR_005639337.1 lncRNA downstream 297112 9926595 ~ 9927447 (+) True LOC120559616
XM_039800910.1 mRNA upstream 77800 9492263 ~ 9512693 (+) True LOC120559285
XM_039801160.1 mRNA upstream 134978 9450096 ~ 9455515 (+) True LOC120559460
XM_039801072.1 mRNA upstream 194906 9383587 ~ 9395587 (+) False LOC120559385
XM_039800789.1 mRNA downstream 14905 9644388 ~ 9983645 (+) True LOC120559226
XM_039801262.1 mRNA downstream 152451 9781934 ~ 9787552 (+) True LOC120559524
XM_039801115.1 mRNA downstream 173355 9802838 ~ 9817650 (+) True LOC120559412
XM_039801117.1 mRNA downstream 173355 9802838 ~ 9817650 (+) False LOC120559412
XM_039801118.1 mRNA downstream 173355 9802838 ~ 9817650 (+) False LOC120559412
TU4342 other upstream 63279 9472100 ~ 9527214 (+) False G3091
TU4305 other upstream 89364 9492309 ~ 9501129 (+) False LOC120559285
TU4189 other upstream 697000 8891448 ~ 8893493 (+) False zbtb45
TU3639 other upstream 1179558 8409857 ~ 8410935 (+) False LOC120565323
TU3609 other upstream 1498988 8089813 ~ 8091505 (+) True G2590
TU4435 other downstream 142092 9771575 ~ 9772935 (+) True G3148
TU4402 other downstream 296188 9925671 ~ 10136159 (+) True G3117
TU4497 other downstream 493668 10123151 ~ 10124118 (+) False LOC120559251
TU4393 other downstream 760685 10390168 ~ 10391345 (+) True G3115
TU5171 other downstream 2567163 12196646 ~ 12261491 (+) False LOC120567030

Expression Profile