G3748 (LOC104951079)


Basic Information

Item Value
gene id G3748
gene name LOC104951079
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 12175131 ~ 12177615 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU5158
CAATATAAGGTACAGCTGAAACACTTATTTCATATATTACAGTCTACACATTACAATAAAATCAAAATAGACACTTATGAAACTGAGGTGATTATCTTTGGAGCAAAAGATGAACGATTTAAAAAGTCAGCGCTCATTTCAAAcaacaatgttcaaaacaacagacaaaaccagaaatcttggtgtaattATGGACTCTGACCTACATTTTAACAGCCACGTTAAGACAGTAACAAAGTCTGCCTactatcaccttaaaaatatatcaagggttaaaggacttatgtgtcTACAGGATTtagaaaaacttgtccatgcttttatcttcagtagacttgactactgtaacggtgtctttacaggtctctaatcaaaaaatcaatcagacagctgcagctgattcagaacactgctgctcgagtcctcactaagacaaagaaagtggatcacgtcactccagttctgaaccctttacactggcttccagtgcctcaaagaactGATTTTAAAGTACTTCTACTGGTTTATTAAttactaaacggtttagggccaaaatagaTTTCGGATCTGCTTGTAAACTATCAACCAGCCGGACCTCTCAGATCATCTGGGACAGGCCTGCTTGCTGTCCCCAGAATCAGAACCAAAAAGCGGGAAGcagtgttcagtttttatgctccacatatctggaacaaacgtCCAGGTGACTGGAAGTCAGCAAcaactctcagctcttttaaatcaaggctgaataCCTCTCTTTTTGACGTTGCCTATTTTTAATTCATTGTACTGTGCTGTGAATTTTATGCCTGTATTCTGATTcatatctgtttttaattttgtaaattgccttgccttgcgttgccttgccttgccttgccttgccttgccttgccttattgCACTGTGCTATAAGTGTAGTAAGTGAAATCATTGGTCTGATTAGAACGAGTTTTCTGCATTTTAAGGCAGATTCTATGTCACTATAAAGTACGAGAAACTTTCcaacaagaaacaaaaaatgaatTCCCCTAAATGCTTGAAAAAATATCTGTATTTACAAAATGAAGCATTAGCAACACTCCTCTAATGACACATAACCGGAACAGTAGCATATTATGTAGAACTCTTTTCATGCAGGAAATATTGATCCACTGGACAGACGTTGAGAGGGCATGCAGACAGTAGACCTCCCGGGACATCACTTGCTTAATTTATCTTCCTAATCCAAGAAACTAAATCTTGTGGAGCAGGCAACCAAAAATCCACTTCTTATGGCACAAGATGTATCCACACATTCTTTGTGGCTCGTTTTCACCCTTTGACACTGTTTAGTTTAGTCTGTAAAAAGAGAAGTGGAAAGAGAAGTCCCTCCTATAGCCTAAACGACCACTGTCAGTGTCTAGCTTCCGTTGTCTTCGCTCAGTCATGTTGCGCGGTGTTTAACACAACTTAAAGGGAGGCTGAATCCCGCTGTGGGGCAGTACTATAAACGTCCATGGGGAGCACTGGAGAGCTCAGTCCTGAGGAGCTTGGTTAAtcaccttcttcttacggaCTGAGACCAGGTCGTAGAACGGATCCTTGGTAATACTCGCTCTGTTTGAAGTAAACAAGATCGTCATTATAAAGAGGCTAATGCAGCAgtattttaagtgtgtgtgtgtttgggggggggtaCTATCTTCTTGAGGACCAATTTCAGTTTTAAACCATTGTAGTGAGGACATTTCTGCATTGTGAGGACATGTTGGCCGGTCCTTGCTACAAAAACCAATATGTAGGTTGATCTAGTGGAGAGTTCCACTTAAAGGTtgtatgtaatgtgtgtttcggaaaaggaaacaaacaaacaggactatGGGAATTTGCATGTGGATGTTTGCATGTTACACAATGTATTCTGAAGTGTCCGGTTATGTCCATGCTGCTGTTTGTGTGGACGTTTGCGAAaccagctgtgtttgtgtgtgtgggcttgtaaTGCTATCTTCTACTCAATATGTAGGTTGATCTAGTGGAGAGTGTGACTTTAAggttagatgtgtgtgtgtgtctatctgtgtgtgtgtctatctgtgtgtgtgtgtgtgtgtgtctatctctgtgtgtgtctatctgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgggtcTGACCTGATGGCTTCGATCCAGGAGTCTCTCTCCTCGGCGCTGGGAGCACAGATGGTGTAGGACTGGTGCTTCCCCTCCACCACTCTGCCGTCTGTCTCTGTTTTACACGCTTTGATCTTCTGCCCTCGACTGTTGGGGTTGTACAGCTCCAGACAGTACTGCACGACACCAAAACCACGTGATAATCTACTCATCTATACATCTAAAATCTCTTGACCTATCTTGAGTGTTGACATCTACAGAACACTCTCtattcaatacaatacaattgGCTTTTAAACATGTCCGTGTTGAAAGAAAAAC

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104951079

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5158 True 2464 lncRNA 0.42 2 12175131 12177615

Neighbor

gene id symbol gene type direction distance location
fam83fb NA coding upstream 1349 12159302 ~ 12173782 (+)
grap2b NA coding upstream 18751 12147264 ~ 12156380 (+)
LOC120573162 NA coding upstream 38790 12131844 ~ 12136341 (+)
lgals2b LOC108231364 coding upstream 483060 11686978 ~ 11692071 (+)
LOC120569250 LOC103136458,LOC106522476,LOC103368092 coding upstream 679284 11189782 ~ 11495847 (+)
LOC120567046 LOC102300655,LOC103479325,LOC102220725,LOC106923894 coding downstream 112896 12290511 ~ 12291542 (+)
LOC120567022 cacng2,LOC100708132,LOC108230331 coding downstream 172295 12349910 ~ 12426349 (+)
LOC120564266 syngr1,LOC103356703 coding downstream 276532 12454147 ~ 12488653 (+)
tab1 NA coding downstream 313769 12491384 ~ 12507155 (+)
rps19bp1 rps19bp1 coding downstream 578857 12756472 ~ 12761594 (+)
G3701 NA non-coding upstream 452921 11721497 ~ 11722210 (+)
G3696 LOC104957816,LOC103371798 non-coding upstream 474726 11697041 ~ 11700405 (+)
G3669 LOC103371799 non-coding upstream 499773 11667554 ~ 11675358 (+)
G3663 NA non-coding upstream 645685 11529156 ~ 11529446 (+)
G3660 NA non-coding upstream 654514 11519684 ~ 11520617 (+)
LOC120562905 NA non-coding downstream 48459 12226074 ~ 12227000 (+)
G3806 NA non-coding downstream 248995 12426610 ~ 12427488 (+)
G3880 NA non-coding downstream 511334 12688949 ~ 12690449 (+)
G3887 NA non-coding downstream 526576 12704191 ~ 12729269 (+)
G3903 NA non-coding downstream 619176 12796791 ~ 12797436 (+)
LOC120559244 NA other upstream 1715843 10320573 ~ 10459288 (+)
G3115 NA other upstream 1783786 10390168 ~ 10391345 (+)
LOC120559474 NA other upstream 1912158 10255444 ~ 10262973 (+)
LOC120559251 NA other upstream 2007517 10123099 ~ 10167614 (+)
LOC120559494 LOC103359075 other upstream 2042989 10098689 ~ 10132142 (+)
LOC120567030 rac2,LOC102196216,LOC108231305,LOC107391413 other downstream 19031 12196646 ~ 12264004 (+)
LOC120565807 LOC103356709,LOC104962452,LOC102300655 other downstream 127095 12304710 ~ 12322209 (+)
mgat3b mgat3,LOC103374702 other downstream 353014 12530629 ~ 12603122 (+)
trnar-ccg NA other downstream 508385 12686000 ~ 12686072 (+)
LOC120555899 NA other downstream 615190 12792805 ~ 12796367 (+)

Expression


Co-expression Network