LOC120567022 (cacng2,LOC100708132,LOC108230331)


Basic Information

Item Value
gene id LOC120567022
gene name cacng2,LOC100708132,LOC108230331
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 12349910 ~ 12426349 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813802.1
CAAAGTCTGTTTCTGCCCGTCTGTTGGGCCAAACAGACAGCCCCCAAACCTTCACCCtcatcttcatttttttttcacttatttGCTGTTCCACCCCAAAACCAACCATACGATTTCCCCCGAGCTCCCCTAATTCCCCCGCCCCCCCAGCCGCCCCCCGCTACCGTCGTCCTCCCGACACAACCCACCCCCCGTTTTCCGAGCTGGCGTGGCGACGCAAACTCACAAATATTTACTTCCTGTACATCAAGAGGAAAGGGGGCCCCCCTTTCGTGGAATGCGGCAACATGGGTGTGTTTGACCGCGGAGTTCAGATGCTGCTGACCACGGTGGGGGCCTTTGCCGCCTTCAGCCTTATGACCATCGCCGTGGGGACGGACTACTGGCTGTACTCGCGCGGTGTCTGCAAGATCAAGAGCACCAACGAGAATGAGACCAGCAAGAAGAACGAGGAGGTGATGACGCACTCGGGCCTCTGGAGGACCTGCTGCCTGGAAGGTTCTTTTAAAGGCATGTGTAAGCAGATAGATCACTTCCCAGAGGATGCTGATTATGAGGCAGATGCTTCTGAGTACTTCCTACgCGCTGTACGAGCCTCCAGTATCTTCCCCATCCTGAGTGTGATCCTGCTCTTCATGGGGGGGCTGTGCATCGCCGCCAGCGAGTTCTACAAGTCACGCCACAACATCATCCTCAGCGCCGGTATCCTCTTTGTCTCCGCAGGCCTGAGCAACATCATAGGAATCATTGTGTACATATCAGCCAACGCTGGGGACCCTTCCAAGAGTGACTCCAAGAAGAACAGCTACTCCTACGGCTGGTCCTTCTACTTCGGCGCCCTCTCCTTCATCATGGCCGAAATGGTGGGCGTGCTGGCCGTGCACATGTTCATCGACCGCCATCGGGAGTTGCGCGTGGGGGCGCGGGCCGCCGACTACCTCCAAGGTGCTGCCATCACGCGCATCCCCAGCTACCGCTACCGCTATCGACGCCGCTCACGCTCTTCGTCCCGGTCCACGGATCCCTCGCACTCCCGCGAGGCATCGCCGGTGGGCCTGAAGGCCTTCGGGACGCTGCCCTCCACCGAGCTGTCCATGTACACGCTGCCCAAGGGCCAAACGGGCACCCCGACAGCCACCTACAACTCCACGGAGAGGGACCACAACTTCCTGCAGGTCCACAACTGTATCCAGAAGGACCTGAAAGACTCAGGCGGCACCGCCAACCGACGCACCACACCTGTATGAAACTGATGCGAGGGACCTCagacaatgaaaaaaataaaaataaaaatcagaggGAATTTGGGGGGAGGCGGCAAAAGACGGATAATGGTGTAAAGGAGACGGAAGGGGAGAAGGGGGCTTTAATGGCTATATGGAGTGAGGGGGTAATAGCGACATAGGGGAAGTTCTGAGCGCTCCACAGCACCTCAGATGATCACTTAgtttctgttttaaaaaaaaggaaacggaaaaaaaaatgcgtaaaaaaaaaaaaaaaaggaacatgcATGATTTTCCCATCTACCATTGTTTaacaatgttttgaacatgttTGTAAAGATATGAGGGGGAGGATGGGGAAAGAGGAGTT

Function

symbol description
cacng2 Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to act upstream of or within several processes, including membrane depolarization; membrane hyperpolarization; and neuromuscular junction development. Predicted to be located in endocytic vesicle membrane and plasma membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in glutamatergic synapse; hippocampal mossy fiber to CA3 synapse; and postsynaptic density membrane. Predicted to be integral component of postsynaptic density membrane. Implicated in autosomal dominant non-syndromic intellectual disability 10.

NR:

description
voltage-dependent calcium channel gamma-2 subunit

GO: NA

KEGG:

id description
K04867 CACNG2; voltage-dependent calcium channel gamma-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813802.1 True 1596 mRNA 0.55 4 12349910 12426349

Neighbor

gene id symbol gene type direction distance location
LOC120567046 LOC102300655,LOC103479325,LOC102220725,LOC106923894 coding upstream 58368 12290511 ~ 12291542 (+)
fam83fb NA coding upstream 176128 12159302 ~ 12173782 (+)
grap2b NA coding upstream 193530 12147264 ~ 12156380 (+)
LOC120573162 NA coding upstream 213569 12131844 ~ 12136341 (+)
lgals2b LOC108231364 coding upstream 657839 11686978 ~ 11692071 (+)
LOC120564266 syngr1,LOC103356703 coding downstream 27798 12454147 ~ 12488653 (+)
tab1 NA coding downstream 65035 12491384 ~ 12507155 (+)
rps19bp1 rps19bp1 coding downstream 330123 12756472 ~ 12761594 (+)
LOC120555869 NA coding downstream 335965 12762314 ~ 12773840 (+)
atf4a NA coding downstream 353627 12779976 ~ 12784897 (+)
LOC120562905 NA non-coding upstream 122910 12226074 ~ 12227000 (+)
G3748 LOC104951079 non-coding upstream 172295 12175131 ~ 12177615 (+)
G3701 NA non-coding upstream 627700 11721497 ~ 11722210 (+)
G3696 LOC104957816,LOC103371798 non-coding upstream 649505 11697041 ~ 11700405 (+)
G3669 LOC103371799 non-coding upstream 674552 11667554 ~ 11675358 (+)
G3806 NA non-coding downstream 261 12426610 ~ 12427488 (+)
G3880 NA non-coding downstream 262600 12688949 ~ 12690449 (+)
G3887 NA non-coding downstream 277842 12704191 ~ 12729269 (+)
G3903 NA non-coding downstream 370442 12796791 ~ 12797436 (+)
G3905 NA non-coding downstream 371489 12797838 ~ 12798186 (+)
LOC120565807 LOC103356709,LOC104962452,LOC102300655 other upstream 27701 12304710 ~ 12322209 (+)
LOC120567030 rac2,LOC102196216,LOC108231305,LOC107391413 other upstream 85906 12196646 ~ 12264004 (+)
LOC120559244 NA other upstream 1890622 10320573 ~ 10459288 (+)
G3115 NA other upstream 1958565 10390168 ~ 10391345 (+)
LOC120559474 NA other upstream 2086937 10255444 ~ 10262973 (+)
mgat3b mgat3,LOC103374702 other downstream 104280 12530629 ~ 12603122 (+)
trnar-ccg NA other downstream 259651 12686000 ~ 12686072 (+)
LOC120555899 NA other downstream 366456 12792805 ~ 12796367 (+)
pla2g6 pla2g6 other downstream 646475 13072824 ~ 13090481 (+)
G4009 NA other downstream 680949 13107298 ~ 13138816 (+)

Expression


Co-expression Network