RNA id: XM_039795084.1


Basic Information

Item Value
RNA id XM_039795084.1
length 1566
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC120555899
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 12792805 ~ 12796367 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agaactggATTGACTGAAACACTACGGATGTGGCGAGGGCGGAACCGCAAACACTGCTAGCTGCTTGTGCTTATTTTGCGGCCTGCTGCGAGCAAACAGAAACAGCTAGAAGAAGAATGTCGGTTGAATCATCGCCTCCTTAGAGACTTCATGCTGTTTAACCTTACAGGGTTCGTTATTAGAAGAATGTCCTCCGCTCTTCCCCGTCATGTCATTTGGGAGTCCGAGGGGCTGGTGGCCCACCTTAACCCCCGGCCCTGGACCCCGGGCTCTGTTATCCTGGAGCGCAGCACCCCCGGCAGCCTCGGAGGCAGCATCTTCCACCTGGAGAAGCAGGAGTTCTTATCCTGGCTGTTAGGGGCCAGAGCTGTTGCAGAGCTGCTGTGTGACAGGCTGGGGGTTAGGAGGTGTGCGCTGGTCAGCAGACCCCACAGAGACAGACCGGCCCAGATCCGTGTCCTCCCTCTACATGGTCTGGATGCAGAGTGGCGCCCCCACCTGGCAGGAGAAGAAGAGCACAACGCCCACGACCCGGGCTACTGCACCTCGAAGACCGCTGGCCGATGGACTAACTCCAGCCTGACTGAAATCCAGACCAAGATTCGAGCTAAGCTCCCCATCCCTGACGCCCCGCCCGATCTGTCTTTCCTCGGGGACAACCCGGCTCATCCCGGCCTGTTTTCGCGCATCGTTCGCGGGGAGGAGGAACAGTGGCGGGTGTGGGAGGATGAGGGTCACGTGGCCTTCCTCACTCCTTTCCCTAACTCCCCCGGCTTCACCGTGCTGGTCCCACGCCGACCGCTGACCTCTGATATTTTCCGACTAGAAAAAGAGGACTACGAGGGACTGGTGCTGGCAACCTGGGAGGTGTCGAGGCTTGTGCAGGAGGCGCTGGGCGCCTGGGGGATGGGGCTTATTTTTGAGGGCTTCGAGATTGACTACGCTCACGCCAAGTTGATACCACTGCTTCTAGCGTCCTCATCAAGGACGGGAAATGAGACCACTAAACCACCACCTCCCCAGTTTTACCCCACTTATCCTGGATATGTGACCTCAGAAGATGGACCTGAAGCCAGCCTGGAAAGTCTGAAGGAACTGCACGTTAAAATGACTCCGATTTAATGCTGTTACCTATAGTTTGATTCCTACTCACCTGCCTAACCTGTAATAGTTTTAGCTGTGAATGGAATTCCTCTTTGCTTCTGAATTAACAAGAATTGtgtaaaataacacatttaagaatgaaggagatgtgatgtaTTTTGGTGTATGTGAGGTCATTGACATAATTTTTTGTACTGTCACAGTCGTTAATCTACCACAGTCTTGTCTTTGACTAATCATGATTGGACAGGGATGCTGCTTTGCACCAGCAAGCATGATCTGTAGGCATTAGATTAGATATCCAAAATTTGACACATTTATGAAAGATAAAGAAATCAAACATCTAATCATGGTTAAGCTGCATAATTTACAAATTAGACCAGGTCTAAAGtttgtaaatatgaatgtgcTTCTGTCAATTACAAAGGAAGTTGCAAGTGTAATAAACTGACTAAAAGCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5335 lncRNA upstream 63543 12704191 ~ 12729269 (+) False G3887
TU5336 lncRNA upstream 63543 12720910 ~ 12729269 (+) True G3887
TU5328 lncRNA upstream 102363 12688949 ~ 12690449 (+) True G3880
TU5264 lncRNA upstream 196280 12530629 ~ 12596532 (+) False mgat3b
TU5235 lncRNA upstream 365324 12426610 ~ 12427488 (+) True G3806
TU5354 lncRNA downstream 450 12796791 ~ 12797436 (+) True G3903
TU5356 lncRNA downstream 1497 12797838 ~ 12798186 (+) True G3905
TU5358 lncRNA downstream 8213 12804554 ~ 12808598 (+) True G3906
TU5365 lncRNA downstream 35581 12831922 ~ 12832360 (+) True G3913
TU5420 lncRNA downstream 188447 12984788 ~ 13047437 (+) True G3959
XM_039795070.1 mRNA upstream 7915 12779976 ~ 12784897 (+) True atf4a
XM_039795030.1 mRNA upstream 18972 12762314 ~ 12773840 (+) True LOC120555869
XM_039795022.1 mRNA upstream 18972 12763816 ~ 12773840 (+) False LOC120555869
XM_039795040.1 mRNA upstream 18972 12763816 ~ 12773840 (+) False LOC120555869
XM_039795049.1 mRNA upstream 18972 12763816 ~ 12773840 (+) False LOC120555869
XM_039805422.1 mRNA downstream 81444 12877785 ~ 12894214 (+) True si:ch211-79m20.1
XM_039805430.1 mRNA downstream 81444 12877785 ~ 12894214 (+) False si:ch211-79m20.1
XM_039805696.1 mRNA downstream 142913 12939254 ~ 12977544 (+) True pvalb7
XM_039805704.1 mRNA downstream 142938 12939279 ~ 12976901 (+) False pvalb7
XM_039805712.1 mRNA downstream 175260 12971601 ~ 12976901 (+) False pvalb7
unassigned_transcript_52 other upstream 106740 12686000 ~ 12686072 (+) True trnar-ccg
TU5171 other upstream 531321 12196646 ~ 12261491 (+) False LOC120567030
TU4393 other upstream 2401467 10390168 ~ 10391345 (+) True G3115
TU4402 other upstream 2656653 9925671 ~ 10136159 (+) True G3117
unassigned_transcript_57 other downstream 183674 12980015 ~ 12980108 (+) True trnai-uau
TU5477 other downstream 288782 13085123 ~ 13090460 (+) False pla2g6
TU5494 other downstream 310957 13107298 ~ 13117392 (+) True G4009
XR_005639123.1 other downstream 730769 13527110 ~ 13536062 (+) False LOC120558420
XR_005639122.1 other downstream 730769 13527110 ~ 13536062 (+) False LOC120558420

Expression Profile