RNA id: TU5264


Basic Information

Item Value
RNA id TU5264
length 1105
lncRNA type sense_over
GC content 0.56
exon number 2
gene id mgat3b
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 12530629 ~ 12603122 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGGAGCTCTCTTCTCGCGGGGGCTCCTCCTTCCACTGCCTTCACTTGCCCCCAAAAACACACTCGCAtatccaccaccaccaccaccacctcctcctcctcctccttgcaTGTCTGATCGAAAGGGAAGCTGATGAAGAAGTAAACGAGAAtagggcagcagcagcagcaggagggggGGTCTTATTTTCTTATGAGCGGAAAAGGCGTCACACCGGGCGCAGAGCGCAGCAGCGCGGAGGACGTAAGAGAGGGAGACGCATCACGGCGAGGGAGATAGAAAAAGACCGAGGGAGGAGGCGCCAGCGGATCGTAAACACGACAGAAAACGGCGAGTAGGACGGGCAGAAAGCGGCGACCACCCTCTCCACCGCCGACCCCCGTgtccctcctcatctctccatctccatccctTTTCTGCGTCGTTTGGCTCATCCCTTCGCAAAGCAGcgcggattttttttttcttcttgattttaatctctttttttttcttcttttttttattatttttttgtggtcAAATCTCTGCTCGGTCTATCGTAGAATTTTAAAACACCCGAGGCAAGTGAGGAGGCTGTGCCATAGGCTACGACCGACGGGATCCACTGTAGGTCCTGCTCGGGACGATCATCGGCGCAACCAATTCGGTGGATAAAACCGGAGGTGGTGAAGGGGAGGGTATGGGGGGGTAGGTGACTGTCGAGTAACCCGGCTGAAGcacacagagagatagagatagagagagagagagagaccccgGCCCCCCGGTTATCACGGAGACTCCAGCATCATCAGTGCGATGGCATAGCGGCTTCTGCAGCAAAGCTACCAGATCAGCAGGGCTCTCATCCACCATGAACCTCTGAAAGACATCCGACACAGGCACAGATGGGATGAAAATGCGGCGGCACAGGGTGTTCTTGTTCTGCACAGTGGGCCTGTGCGTCATCTCCTTCCTCCACTACTACAAGGCCCTCCACTACGTCTCCCTGCTGCGCGAGCTCTCCGCCCCGTACCCCAACATCAAGTCCTTCATCATGGTCACTGGCTTCTTCTGGAGGGAGAAAGGCGCGGCCACCACCCCGCTAAGCCCCGCCTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5235 lncRNA upstream 103141 12426610 ~ 12427488 (+) True G3806
TU5225 lncRNA upstream 210028 12319827 ~ 12320601 (+) False LOC120565807
TU5174 lncRNA upstream 266666 12208735 ~ 12263963 (+) False LOC120567030
XR_005639870.1 lncRNA upstream 303629 12226074 ~ 12227000 (+) True LOC120562905
TU5173 lncRNA upstream 314593 12208735 ~ 12216036 (+) False LOC120567030
TU5328 lncRNA downstream 92417 12688949 ~ 12690449 (+) True G3880
TU5335 lncRNA downstream 107659 12704191 ~ 12729269 (+) False G3887
TU5336 lncRNA downstream 124378 12720910 ~ 12729269 (+) True G3887
TU5354 lncRNA downstream 200259 12796791 ~ 12797436 (+) True G3903
TU5356 lncRNA downstream 201306 12797838 ~ 12798186 (+) True G3905
XM_039809107.1 mRNA upstream 23474 12491384 ~ 12507155 (+) True tab1
XM_039809129.1 mRNA upstream 41976 12454148 ~ 12488653 (+) False LOC120564266
XM_039809135.1 mRNA upstream 43660 12454147 ~ 12486969 (+) True LOC120564266
XM_039813802.1 mRNA upstream 104280 12349910 ~ 12426349 (+) True LOC120567022
XM_039811854.1 mRNA upstream 208420 12304710 ~ 12322209 (+) False LOC120565807
XM_039810880.1 mRNA downstream 159940 12756472 ~ 12761594 (+) True rps19bp1
XM_039795030.1 mRNA downstream 165782 12762314 ~ 12773840 (+) True LOC120555869
XM_039795022.1 mRNA downstream 167284 12763816 ~ 12773840 (+) False LOC120555869
XM_039795040.1 mRNA downstream 167284 12763816 ~ 12773840 (+) False LOC120555869
XM_039795049.1 mRNA downstream 167284 12763816 ~ 12773840 (+) False LOC120555869
TU5171 other upstream 269138 12196646 ~ 12261491 (+) False LOC120567030
TU4393 other upstream 2139284 10390168 ~ 10391345 (+) True G3115
TU4402 other upstream 2394470 9925671 ~ 10136159 (+) True G3117
TU4497 other upstream 2406511 10123151 ~ 10124118 (+) False LOC120559251
TU4435 other upstream 2757694 9771575 ~ 9772935 (+) True G3148
unassigned_transcript_52 other downstream 89468 12686000 ~ 12686072 (+) True trnar-ccg
TU5353 other downstream 196273 12792805 ~ 12796367 (+) True LOC120555899
unassigned_transcript_57 other downstream 383483 12980015 ~ 12980108 (+) True trnai-uau
TU5477 other downstream 488591 13085123 ~ 13090460 (+) False pla2g6
TU5494 other downstream 510766 13107298 ~ 13117392 (+) True G4009

Expression Profile