bbs2 (bbs2)


Basic Information

Item Value
gene id bbs2
gene name bbs2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 35111264 ~ 35131137 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808014.1
agCAGACAGGAAGTAGTTGTTGGCAGAGAATCCTGTCGTGCcaaccagctagctagctagctcattaGCTGGTTAGCTCAATTTAACCATATTCCAATATTTACAGCTGAGGAGGGCGCCAGaAAACGACGACGGGGAGATTAGCCAGATGAAAAGCTTTAGCTTGCCAGTCTttgttgctaggcaacagcaCTATCTTCTGACTGTCTGAGGGATATACAGTAGGCACCATGTTGGTCCCTATATTCACACTGAAGCTGAACCACAAGATTAACCCTCGCATGGTGACTGTTGGGAAATTTGATGGAGTCCACCCATGCCTTACTGCAGCCACACAGGCTGGAAAGGTTTTTATCCATAACCCTCATGCCCGTGGTCAGAAACCTGTGGCCCACCGACTGAGCCAGAGCACACAAGACTCTGACATCTCACTCCTCAACATCAACCAGGCAGTCACTTGTCTGACGGCAGGAACGCTGGGACCAAACACCACTGGGGACACGCTGTTGGTGGGATCCCAGACCAACCTGCTGGCCTATGATGTCCATGACAACGCTGATATATTCTACAGAGAGGTGACGGATGGGGCCAATGCAATTGTGTTAGGAAAACTCGGGGACATCCCAAATCCTCTCGCCATCATTGGAGGGAACTGCGCCTTACAAGGCTTTGACTTTGAGGGCAATGACCACTTCTGGACAGTAACTGGTGATAATGTCAGATCTCTGGTGCTCTGTGACTTCACCGGAGATGGGAAAAATGAGCTCCTGGTAGGATCGGAGGACTTTGACATCAGGGTATTCAAAGAGGATGAGCTTGTGTCTGAGATGACTGAAAATGAGACGGTAACATCACTGTGCCATATGCATGACAGCAGGTTTGGCTACGCCCTTGCCAATGGCACCGTGGGAGTTTATGACCGCACTGCCCGCTACTGGAGGATTAAGTCTAAGAATCATGCAATGAGCATCCATGCCTTTGACCTGAACGCTGATGGGGTGGTGGAGCTTATCACTGGCTGGTCCAATGGAAAGATTGATGCTCGTAGTGACCGAACAGGCGAGGTCATTTTCAAAGACAACTTCTCCTCTTCTGTGGCCGGAGTGGTGGAAGGAGACTACAGGTTGGATGGACAGAATCAACTTATCTGCACCTCCATAGAGGGAGAGGTCCGAGGTTACCTGCCAGCCAGTAAAGACCTTAAAGGGAATCTGATGGACTCCAGTGCTGAACAGGACCTGATCAGAGAGCTCAGCCAGCGCAGACAGAATCTGCTGCTGGAGCTACGCAACTATGAAGAGAATGCCAAGGGTGTGTCAGAGACAAACAGTGGGATGGGTGTCATACCAGCCAACACTCAGCTCCAGACGGCGCTGTCAGTGAGACCTGCTACGGAGGCTCAGAAGGCTCATGTAGAGCTCAGCATTTCAACACCAAATGAAACCATTATCCGTGCAGTGCTCATCTTCGCAGAGGGGATTTTTGAGGGGGAGAGTCACGTTGTCCACCCCAGTGCCCAGAACCTGTCGGGCTGTGTCCGAGTCCCCATTGTCCCCCCAAAAGATATACCAGTAGATCTGCACATCAAAGCCTTTGTTGGAGGGAAAACTAGCACCCAATTCCACGTGTTTGAAATCACTCGTCAGCTGCCTCGTTTCTCCATGTATGACATCACGGTGGACTCCTCAGCTGCTCCGCCCACCGGAAGGGTCACATTCAGCATCAACGACCGACCACAGCGGGTGGTGATGTGGCTGAATCAGAACTTCCTGCTTCCAGAAGGAGTAGACAGTCCTGACATTACTTTGAATTCACTAAGAGGAGGGGGACTGTTGTCCATCAGTATGGCCAGCAGTGGAcagATCACTCTGAAAACAGATGACATCGACCTGGCAGGAGATCTGGTCCAATCACTGGCCTCCTTCATGGCAATAGAGGACTTGTCAGCAGAAGCAGACTTCCCCGGATACTTCGAGGAGCTACGCACTACACTCACTGAGGTGGATGAGTTCCACTCTGTCCATCAGAAGTTAACTGCAGCCATGGCCGACCACTCCAACTACATCAGGAACATGCTGGTGCAAGCAGAGGATGCTCGCCTTATGGGTGAGATGACAACTATGAAGAAGCGTTACAGAGAGCTGTACGATCTAAACAGGGATCTGGTCAACGAGTATAAAATCCGTTCTAACAACCACAATGCACTGCTGGCCTGCCTCAAGTCTGTCAACCAGGCCATACAGCGGGCTGGTAGACTCCGAGtGGGTAAGCCCAAAAACCAAGTTATATCTGCCTGTCGAGACGCCATCAAGAGCAATAACGTCAACGCACTCTTCAGGATCATGAGAGCTGGCGCTGCGTCCTCCTGAGGctggaaggagggaggggggggatgaCAATGCAGGAACGGACAAATAGATTGAAAGTACAAGCACAATTGATCAGTACTGTAATAATGTGGAACTTCATCTATGTCAAGCATGGCAGCAGCAAGGATGTTTCCCCATGGGACGAGAACTACACGACCCAGGGACCCGCTGTTGCAGCCTTAATCTATCTTTTTCCACGATTTAGGAAGAAGCAACAGCCTGGCAGCAACATTTAGCAACAGCTCCATAATACTTTTACTGTATGTGAAATCTTGACATTCTGCTCGCTCGCAGACATAACATGCTGACCACAGGCTTTAGTGCACTAGTAAAAATGTCATCCATCTCAGTCTAATCTCTGTGGCCGTTGGAAGAGCTTGATTTAGTGCAAACTTGGCTAGATACAAAATTAGTGTAGTGCAGGCAGGAGCGACACAACCGTTTTAGAGAGTTCGGCTGGACCAAAGGAGGGAGTGGAATGCTTCCCCCAAACTGTTTCTCAAAAGCAATGGAACAAAGATAGTCTGAGTACTGTGATGCTTTAGAGAAGttcattttttattcattaatctgattggtttaacgtATTGCTGCGGTCTAAAACTCATGCCAAAGAACAATGAGTCTTTTTTGCTCACATATACTGTCTAAAAGCATCAGTAGTTAAAAGAAAGAGAGTTAAGTCTTATGTCCATAGAATGTACTAGAGTTGTTCCAGGTGACGGTGCACATCTGTCTAAGAAATGTTTAAACTTCAGAAAAGAAACTCCGTCTGTTCCCACTAAAGACTTGAGGGTTTGTAGAAAATGACTATCTGCTGGATGACTGTTTGATCCAGCGGACACAGTGATGTTTAGAGAGAGCACAGCTGGAGCAAGACAGACCCAGGAATCACTGGTGACCCCGATAGTTTGGCGTGACGGCTCGCGTCTCTGCTTCCAGCTGTtgtggtgtgttttgtgtgccgTTTGTAGCCaaagaaaacaattttaaatgagTGGTCACGGGGAGGAGCACTGCTGTGCATTTAACTTGTTAACCTTTTGTAGATTGTACACAGAGAttgtaaatgtcattttttgCTTGTGGCATTTATTAAATTAACTTGtgtttaaaaa

Function

symbol description
bbs2 Acts upstream of or within several processes, including Kupffer's vesicle development; cilium assembly; and establishment of pigment granule localization. Predicted to be located in ciliary membrane; cytoplasm; and cytoskeleton. Predicted to be part of BBSome. Predicted to be active in several cellular components, including ciliary basal body; motile cilium; and neuron projection. Is expressed in retina and retinal photoreceptor layer. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome; Bardet-Biedl syndrome 2; obesity; and retinitis pigmentosa 74. Orthologous to human BBS2 (Bardet-Biedl syndrome 2).

NR:

description
PREDICTED: Bardet-Biedl syndrome 2 protein

GO:

id name namespace
GO:0046907 intracellular transport biological_process
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0051877 pigment granule aggregation in cell center biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K16747 BBS2; Bardet-Biedl syndrome 2 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808014.1 True 3487 mRNA 0.48 19 35111264 35131137

Neighbor

gene id symbol gene type direction distance location
b3gnt9 b3gnt9 coding downstream 6367 35096988 ~ 35104897 (-)
LOC120563671 LOC102308624,LOC101464672,LOC100707722 coding downstream 362289 34730082 ~ 34748975 (-)
LOC120563673 NA coding downstream 437010 34639308 ~ 34674254 (-)
LOC120563674 LOC102308624,LOC101464672,LOC100707722,LOC105926568 coding downstream 477455 34618302 ~ 34633809 (-)
LOC120563681 LOC108415768,LOC100698998 coding downstream 681449 34428759 ~ 34429815 (-)
LOC120564297 NA coding upstream 23602 35154739 ~ 35155316 (-)
LOC120563683 NA coding upstream 24176 35155313 ~ 35155827 (-)
LOC120564298 LOC104959125 coding upstream 24914 35156051 ~ 35159186 (-)
LOC120564302 NA coding upstream 51363 35182500 ~ 35185858 (-)
LOC120564426 NA coding upstream 84030 35215167 ~ 35217522 (-)
G90039 NA non-coding downstream 51158 35002953 ~ 35060106 (-)
G90038 NA non-coding downstream 53627 35055265 ~ 35057637 (-)
G90030 NA non-coding downstream 56042 34951944 ~ 35055222 (-)
G90028 NA non-coding downstream 89057 34975333 ~ 35022207 (-)
G89925 NA non-coding downstream 372491 34737735 ~ 34738773 (-)
G90058 LOC103376141,LOC104955241 non-coding upstream 17014 35148151 ~ 35253332 (-)
G90059 NA non-coding upstream 20909 35152046 ~ 35178398 (-)
LOC120564427 NA non-coding upstream 80782 35211919 ~ 35213649 (-)
G90097 NA non-coding upstream 163590 35294727 ~ 35295515 (-)
LOC120564191 NA non-coding upstream 238777 35369914 ~ 35371961 (-)
G89928 NA other downstream 433163 34676243 ~ 34678101 (-)
psme3ip1 fam192a other downstream 499102 34595209 ~ 34612162 (-)
LOC120563661 LOC102294989,LOC101481490 other downstream 665128 34380061 ~ 34446136 (-)
G89870 LOC105899468,LOC106564289,LOC105009107,LOC106597831,LOC106591119,LOC103392864,LOC106597772 other downstream 779268 34290803 ~ 34331996 (-)
G90055 LOC105899468,LOC106591119,LOC106564289,LOC106564211,LOC106594866,LOC106597831 other upstream 13252 35144389 ~ 35171683 (-)
G90150 NA other upstream 735876 35867013 ~ 35867311 (-)
G90380 anapc13 other upstream 1381825 36512962 ~ 36517927 (-)
LOC120564801 LOC100696185,LOC103368973 other upstream 1387103 36518240 ~ 36521963 (-)
tigara NA other upstream 1712416 36843553 ~ 36852641 (-)

Expression


Co-expression Network