LOC120563984 (syt9,LOC108243479,LOC103466244,LOC105929741,LOC107389215,LOC106536968)


Basic Information

Item Value
gene id LOC120563984
gene name syt9,LOC108243479,LOC103466244,LOC105929741,LOC107389215,LOC106536968
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 31190066 ~ 31499894 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808553.1
agagagagaaagagagagagagagaggtggtgaAGGATCAGCCGAAGTGGCAGACCAGTTAGAAGGATGCTGGAGGGCAATGCCTGCAGAAAGAGAGGATGAAATTTGTCGAAAGGCGCTGGAACTGCTCTCCGAAATGTGCTCTAAGGGAGAGGTGCAAGACGAGCACTGCCTGGATTTCATTTACTACTTCAGGGACCTGGCCAGACCGCGTTACACAGACTCAGATGTATCGGTGAGCCTTTTGTCCCTGCTGGTCACCACCTGTGGTTTGGCTCTATTCAGCGTCTCCCTCTTTGTCTCATGGAAGTTATGCTGGGTGCCACTGAGTGGCCGTTTCCTCCCAGATGTCTTCAAGGGGGCACACTGCTTGGGTGGAGACCAACAGCCCGTCCTCACAGAGGTGGAGGGGGAGGAAAGGGAGTACAGCGAGGACGGCTGTGTGAAGGAGCCTTCAGGACCCCCCTCGGCTGTGGCTGTCCCAGAGTCAGGACTAAAGATAAGCCACACGTCACCGGACATCCCCCTGGAGACCCAGGCCAAACTGGAGAAAAACCAGGTCCACACCCTGGCCAGGGACAGGGTCCAGAGACAGATTACTGAGCCTACCTCATCTGTACGGCACAACTCCATCCGTCGTCAGATGAACTTGTCCAATCCAGATTTCAACCCTGCTCAGTTCCAGCGTCAAGAGTCACTGTCTGGTTTGGGCCGAATCAAACCAGAACTCTACAAACAGCGATCAGTCGATGCAGAAGATGGACGTTGCACAGACAGCTGTGGGCGTCTCCTCTTCGTTCTGAAGTTTGACTTTGACCTAGAGCAGCTGATCGTGAAGATCCACAAGGCTCAGGATCTTCCGGCAAAGGACTTCTCAGGGACCTCCGACCCTTATGTCAAGATCTACCTGCTGCCTGACCGCAAAACCAAGCACCAGACCAAGGTGCACCGCAAGACACTCAACCCAGTGTTCGATGAGGTGTTTCTCTTTCCTGTGGCGTACGCCGAGCTGTCAAGCCGTAAACTGCACTTCAGCATCTACGACTTTGACAGGTTCTCTCGCCATGACTTGATTGGCCAAGTGGTTGTGGACAACTTCCTGGATCTTGCCGACTTTCCCCGGGAGACAAAGCTGTGCCGGGACATACATTATGTAACCTCGcACAATGTGGACCTAGGAGAGCTGATGTTCTCGTTGTGCTATCTCCCCACGGCTGGCAGACTCACCATCACCATGATCAAGGCCAGAAATCTCAAAGCCATGGACATCACTGGAGCTTCAGATCCATATGTGAAAGTGTCCTTGATGTGTGAAGGCCGGAGGCTAAAGAAGAGGAAGACGTCAACCATGCGTAACACTCTAAACCCATTGTACAATGAAGCCATTGTGTTTGATGTTCCTCCTGAGAATATCAACCAGATCAGCCTGCTCATAGCTGTCATGGACTATGATCGGGTCGGACATAATGAAGTGATCGGGGTATGCAGGGTGGGCAATGAGGCTGAGAGCCTGGGGCGAGACCACTGGAATGAGATGCTGACATACCCACGGAAACCCATTGCACACTGGCACCCGCTAATGGAGTGGGTCGGACAGGGAGCGACGGTGAGTGGAAGCCAAGGAGGATCCACCAATTCCCTGAAGCTACCACCATCAccatgaccacacacacacacacacacacacacaaggtgtgACTAACAAGCAAATACAGTAGCAGGATCAGCTAAAAACCATTACTTAAGCTGTTATATCTATTAGACTGAACAATGTTTTGTGTGCTAAAACTGCTGCAAAAGTTAATATCCACTTCTTACCTCCTAATTTGTCTTCACAACCAAAAATCACTTAACAACATTCCAACTGACTTACTAGTACTTTGATGTGTCACTTTAAGTTGTTACTGACAGTATCAAAAGGTTGAGATTATCTAACTATCTAGGTCAAGCtattttttaacaaattttTGTGGACCAAAATCATTATGTTATAGGTATAATCTGTAGCTTGTGATTTGTGTATGTGATCAGGTATCATAGATGCAGGAAGAGATAAGGCCCAAACACATTGAAAGCATCTGACTCATGTGTTTTTAAGTACAAAAAGTACCTTTTGTTTTAAGTGGCATAATACACACCAAAAGCATTATGAGGTGACGTGCCTACTCCGAccttttttccattttggagCTTCTAATGAGGTCCCAGCAACcaaatctgtttttttctgcagtACCTGTTTGGTGAGagctaaaagaaataaaaaagtaagGATTTTTTCCCAGAGGACAATACTTTATTAAATACCTGCTGCTGTCCCTAGAGTCTGGCAAGCTAAATGTAGGCTGGTGGATATTATGAGTTTCTTCAAAAAAGCTGGAGCTGGGTTGTCTGGGGAGAGTCACGGAGCAGGATGTATTAGTTTGGGCCAGGCTGATGCAGAGAATAACCCCAGCACCATAGCatctccctcccttccctctCTCGCCGTGTGAACGACAGGCAGTGAGTGACTGAGTTACTGTGGTTACAACCATCTGTGTCATCAGGTAATTTTGTCATGgggtacctgtagtaggctatataaaaatgttgcttAAATAGCGTCCTTTTCCTAAAATACTGCTGGTTCTGTGTGTTGGCATTTCATATCTGATGCCGGGAGTGCGACAGAGGAGTATTAATTGAAGCTCGTCAAATGAGGACTGTCAATTATGCTTTCAGTGTATTTGCCCCTTTAGACAGGTTAGGTTACAGAATTATAAATGACAGAGAGGGCATTCCTGAAAGTTTATTGCTCTTGGACATTTTATTGGCTAATGtgttaaacatttaaatttcTAATGCATTGGTAAAGTGCTGCTTAAACTCAACAAAGGAGAGTTTCTAAGGGGCACACAGAGAAGCTTTTTGATGCAAACGCACATGTCTTGCAttgtttgggccgaccgtccaaacCAGTGGTCTCAACCTTTTTGGTGCCAGTGCCCCCCTATCGCCCCGatcaaaaaaatctaatcattgaatgacaaacaacacatgtattagtt
>XM_039808554.1
agagagagaaagagagagagagagaggtggtgaAGGATCAGCCGAAGTGGCAGACCAGTTAGAAGGATGCTGGAGGGCAATGCCTGCAGAAAGAGAGGATGAAATTTGTCGAAAGGCGCTGGAACTGCTCTCCGAAATGTGCTCTAAGGGAGAGGTGCAAGACGAGCACTGCCTGGATTTCATTTACTACTTCAGGGACCTGGCCAGACCGCGTTACACAGACTCAGGTGGAGGGGGAGGAAAGGGAGTACAGCGAGGACGGCTGTGTGAAGGAGCCTTCAGGACCCCCCTCGGCTGTGGCTGTCCCAGAGTCAGGACTAAAGATAAGCCACACGTCACCGGACATCCCCCTGGAGACCCAGGCCAAACTGGAGAAAAACCAGGTCCACACCCTGGCCAGGGACAGGGTCCAGAGACAGATTACTGAGCCTACCTCATCTGTACGGCACAACTCCATCCGTCGTCAGATGAACTTGTCCAATCCAGATTTCAACCCTGCTCAGTTCCAGCGTCAAGAGTCACTGTCTGGTTTGGGCCGAATCAAACCAGAACTCTACAAACAGCGATCAGTCGATGCAGAAGATGGACGTTGCACAGACAGCTGTGGGCGTCTCCTCTTCGTTCTGAAGTTTGACTTTGACCTAGAGCAGCTGATCGTGAAGATCCACAAGGCTCAGGATCTTCCGGCAAAGGACTTCTCAGGGACCTCCGACCCTTATGTCAAGATCTACCTGCTGCCTGACCGCAAAACCAAGCACCAGACCAAGGTGCACCGCAAGACACTCAACCCAGTGTTCGATGAGGTGTTTCTCTTTCCTGTGGCGTACGCCGAGCTGTCAAGCCGTAAACTGCACTTCAGCATCTACGACTTTGACAGGTTCTCTCGCCATGACTTGATTGGCCAAGTGGTTGTGGACAACTTCCTGGATCTTGCCGACTTTCCCCGGGAGACAAAGCTGTGCCGGGACATACATTATGTAACCTCGcACAATGTGGACCTAGGAGAGCTGATGTTCTCGTTGTGCTATCTCCCCACGGCTGGCAGACTCACCATCACCATGATCAAGGCCAGAAATCTCAAAGCCATGGACATCACTGGAGCTTCAGATCCATATGTGAAAGTGTCCTTGATGTGTGAAGGCCGGAGGCTAAAGAAGAGGAAGACGTCAACCATGCGTAACACTCTAAACCCATTGTACAATGAAGCCATTGTGTTTGATGTTCCTCCTGAGAATATCAACCAGATCAGCCTGCTCATAGCTGTCATGGACTATGATCGGGTCGGACATAATGAAGTGATCGGGGTATGCAGGGTGGGCAATGAGGCTGAGAGCCTGGGGCGAGACCACTGGAATGAGATGCTGACATACCCACGGAAACCCATTGCACACTGGCACCCGCTAATGGAGTGGGTCGGACAGGGAGCGACGGTGAGTGGAAGCCAAGGAGGATCCACCAATTCCCTGAAGCTACCACCATCAccatgaccacacacacacacacacacacacacaaggtgtgACTAACAAGCAAATACAGTAGCAGGATCAGCTAAAAACCATTACTTAAGCTGTTATATCTATTAGACTGAACAATGTTTTGTGTGCTAAAACTGCTGCAAAAGTTAATATCCACTTCTTACCTCCTAATTTGTCTTCACAACCAAAAATCACTTAACAACATTCCAACTGACTTACTAGTACTTTGATGTGTCACTTTAAGTTGTTACTGACAGTATCAAAAGGTTGAGATTATCTAACTATCTAGGTCAAGCtattttttaacaaattttTGTGGACCAAAATCATTATGTTATAGGTATAATCTGTAGCTTGTGATTTGTGTATGTGATCAGGTATCATAGATGCAGGAAGAGATAAGGCCCAAACACATTGAAAGCATCTGACTCATGTGTTTTTAAGTACAAAAAGTACCTTTTGTTTTAAGTGGCATAATACACACCAAAAGCATTATGAGGTGACGTGCCTACTCCGAccttttttccattttggagCTTCTAATGAGGTCCCAGCAACcaaatctgtttttttctgcagtACCTGTTTGGTGAGagctaaaagaaataaaaaagtaagGATTTTTTCCCAGAGGACAATACTTTATTAAATACCTGCTGCTGTCCCTAGAGTCTGGCAAGCTAAATGTAGGCTGGTGGATATTATGAGTTTCTTCAAAAAAGCTGGAGCTGGGTTGTCTGGGGAGAGTCACGGAGCAGGATGTATTAGTTTGGGCCAGGCTGATGCAGAGAATAACCCCAGCACCATAGCatctccctcccttccctctCTCGCCGTGTGAACGACAGGCAGTGAGTGACTGAGTTACTGTGGTTACAACCATCTGTGTCATCAGGTAATTTTGTCATGgggtacctgtagtaggctatataaaaatgttgcttAAATAGCGTCCTTTTCCTAAAATACTGCTGGTTCTGTGTGTTGGCATTTCATATCTGATGCCGGGAGTGCGACAGAGGAGTATTAATTGAAGCTCGTCAAATGAGGACTGTCAATTATGCTTTCAGTGTATTTGCCCCTTTAGACAGGTTAGGTTACAGAATTATAAATGACAGAGAGGGCATTCCTGAAAGTTTATTGCTCTTGGACATTTTATTGGCTAATGtgttaaacatttaaatttcTAATGCATTGGTAAAGTGCTGCTTAAACTCAACAAAGGAGAGTTTCTAAGGGGCACACAGAGAAGCTTTTTGATGCAAACGCACATGTCTTGCAttgtttgggccgaccgtccaaacCAGTGGTCTCAACCTTTTTGGTGCCAGTGCCCCCCTATCGCCCCGatcaaaaaaatctaatcattgaatgacaaacaacacatgtattagtt

Function

symbol description
syt9 Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to be located in clathrin-coated endocytic vesicle membrane. Predicted to be active in hippocampal mossy fiber to CA3 synapse; plasma membrane; and secretory vesicle. Predicted to be integral component of synaptic vesicle membrane.

NR:

description
PREDICTED: synaptotagmin-9

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K19909 SYT9; synaptotagmin-9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808553.1 True 3050 mRNA 0.47 8 31190066 31499894
XM_039808554.1 False 2874 mRNA 0.47 7 31190066 31499894

Neighbor

gene id symbol gene type direction distance location
LOC120563346 LOC106024097,LOC105418589 coding upstream 251864 30932443 ~ 30938202 (+)
LOC120564223 parva,LOC103379681 coding upstream 472911 30683862 ~ 30717155 (+)
LOC120563894 NA coding upstream 605836 30481941 ~ 30584230 (+)
LOC120563903 NA coding upstream 763359 30426495 ~ 30426707 (+)
LOC120563902 NA coding upstream 984665 30202226 ~ 30205401 (+)
LOC120564412 spon1,LOC107094903 coding downstream 237829 31737723 ~ 32220761 (+)
LOC120563341 NA coding downstream 1062273 32562167 ~ 32565265 (+)
LOC120563342 LOC106532362 coding downstream 1065365 32565259 ~ 32566745 (+)
LOC120564016 LOC100694473,LOC102308285,LOC101472020,LOC103379534,LOC102194645 coding downstream 1169384 32669278 ~ 32694390 (+)
LOC120564017 NA coding downstream 1205840 32705734 ~ 32717437 (+)
G89200 NA non-coding upstream 33246 31156372 ~ 31156820 (+)
G89156 NA non-coding upstream 121303 31022907 ~ 31068763 (+)
LOC120564479 NA non-coding upstream 138063 31041011 ~ 31052003 (+)
LOC120563430 NA non-coding upstream 149126 31040533 ~ 31040940 (+)
G89152 NA non-coding upstream 182971 31005610 ~ 31007095 (+)
G89235 NA non-coding downstream 34309 31534203 ~ 31534833 (+)
LOC120564416 NA non-coding downstream 289200 31789094 ~ 31791458 (+)
G89505 NA non-coding downstream 1286826 32786720 ~ 32789113 (+)
G89506 fa2h non-coding downstream 1289954 32789848 ~ 32790103 (+)
G89507 NA non-coding downstream 1290643 32790537 ~ 32791233 (+)
G89164 NA other upstream 108186 31081015 ~ 31081880 (+)
LOC120564323 LOC100693668,LOC101468938,LOC102215274,LOC108243483 other upstream 300369 30752581 ~ 30889697 (+)
LOC120563900 NA other upstream 566083 30609213 ~ 30623983 (+)
LOC120563901 LOC107562792 other upstream 709031 30436920 ~ 30481035 (+)
G88950 NA other upstream 1073815 30113189 ~ 30116251 (+)
LOC120564288 LOC106676433,LOC101470282,LOC102193107,LOC103142492,LOC103466241,LOC102310553 other downstream 41087 31540981 ~ 31682159 (+)
LOC120564413 NA other downstream 464519 31964413 ~ 31969489 (+)
G89409 NA other downstream 990249 32490143 ~ 32496562 (+)
LOC120564557 ccdc73 other downstream 1093690 32593584 ~ 32627674 (+)
G89540 znf319,LOC104967809,LOC102797175 other downstream 1406042 32905936 ~ 32911727 (+)

Expression


Co-expression Network