LOC120564412 (spon1,LOC107094903)


Basic Information

Item Value
gene id LOC120564412
gene name spon1,LOC107094903
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 31737723 ~ 32220761 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809345.1
GTTTGGACCTTCCCTCGCCTCAAGTCAAGGAGACATCCGCGTGCACCCGCGCTCGGTTATTTTACGGCCCCCGCTGCTTCCATGCTCTCTCTCAACCCCACACACTGATCCGCGAACAGCAACAGcagctcctctctcttctgttccaGCTCAGCACCGCTTAAACGTGGTGCGCCTCTGACGCGCTCTCTCCAGTTCAGGATGGAATCGTCTCCTTCTCTTCACCTTTACCACTGACTCTGACGCTGCTGTAGTTTGGTGGGAGTTCCTGGGGAAGTGCCTGGAACTGGTCCTCTGTCTGCTGTTTCGCCTTTCCACTGGGCGTAGGCTACTTTGACTCATAACTACAATTGTACACTTATCTCCGGGCTCCGAAATGGGACTGTATTTACATGCGCTGTTTTTGCAGTACTATTTCGTCTCGAGTTTCGTGTGCAACGCTGTCGCTGTCGCTTTCGTTGAGGAGCCCTCCGGAGGCAAGTCGGACGGGTACTGCGGGCGGATCATCCGGGCGCAGACCCAGGGGACTCGGAGGGATGGGCACCATGAGTTCAGACTCAGAGTGGAGGGGGACCCGGAAACCTATCAGCCGGGCAGCACCTACAGAGTGATCCTCCTGGCAATCAGCCCTGCTTATTTCAGAGGTTTCACTCTTATCGCACTGAAGGAGGGCAGAGAGGGCACCACAGACGACGACTACACCGGCCAGTTCCAGAACATTGATGAGGAGGACACACAGTTCATGACCAACTGTGCCCCTGCAGTGACAGAGAGCACACCTCGAAGACGCACCAGGATACAGGTCTTCTGGACGGCGCCGCCTACTGGGTCTGGCTGTGTAATACTTAAgGCCAGTATTGTCCAGAAGAGAATAATTTATTTCCAGGATGAAGGCTCTCTCACTATTCGACTGTGTGAGAAAGAGCGTGTGTTTGGTGAAGCCACAGAAGCTCCCGCTATGGAGTGCTGCGCCTGCGGAACAGCCAAGTACAGACTCACCTTCTATGGCAACTGGTCAGAGAAAGTACATCCCAAAGACTACCCAAGACGAGCGAACCACTGGTCGGCTCTGATTGGTGCGTCTCACACCAGAAGTTATGTGCTATGGGAGTACGGGGGCTACGCCAGCGAGGGAGTCCGTCAGGTTGCTGAGTTCGGCTCCCCTATCAAGATGGAAGAAGAGATTCGACAGAAGGGAGATGAAGTACTGACTGTTATTAAAACTAAGGCTCAGTGGCCGGCATGGCAGCCGCTCAACCTGCGAGCTGCTCCATCAGCAGAGTTTTCTGTGGATCGGACCCGTCACCTGATGTCCTTTCTCACCATGCTTGGGCCCAGCCCAGACTGGAATGTGGGGCTGTCAGGAGAGGACCTTTGCACTAAGGAGTGTGGCTGGGTCCAGAGGCTGGAGACAGACCTCATTCCCTGGGATGCAGGCACTGACAATGGTGTCACATATGAGTCACCGAACAAGCCCACCTTTCCTCAAGAGAAGATCCGACCCTTGACCAGTTTGGACCACCCCCAGAGCCCATTCTATGACCCAGAGGGAGGGGCAATTACCCCTGTAGCCAAGCTGGTGGTGGAACGCATCGCTAGAAAGGGAGAGCAGTGTAATATGATCCCAGACACCATAAATGACATTGTAGCTGATATTGGacaggaggagaaggaagaagATGACACACCAGAGACATGTATCTACTCAGGCTGGTCTCCCTGGTCAGCCTGTAGCAGCGCTACGTGTGAAAAAGGCCGCAGGATGAGGCAGAGGATGTTGAAGGCCCAGTTGGATCTCAGCGTGCTGTGTCCCCACACTCAAGATTTTCAGCCCTGCATGGGACCGGGATGCAGTATGGAGGAGCCCTCAACGTGTATGATGTCGGAGTGGATCAGCTGGTCTGCCTGCAGTGTGTCCTGTGGGATGGGGACGAGGTCTAGAGAGCGATATGTCAAACAGTATCCTGAGGATGGCTTGCTCTGCCAGCTCCAAACTGAGGAGATAGAGAAGTGTGTTGTCAACGATGAATGCTCACCAAGCACCTGTGTGGTGACTGAGTGGGCTGAGTGGGATCCCTGCAGCATCACCTGTGGCTTAGGTATGAGAAGACGTGAACGCATGGTTAAGATGCCTCCTACAGATGGATCAATGTGTAAGACCGAGGTGTCCGAGGTGGAGAAATGCATGATGCCAGAATGTCataCCACTCTCTGCATGCTGTCTCCCTGGTCTGACTGGAGTGAGTGTAGTATGACGTGTGGGCAGGGCGTGCAAACACGTCAGAGAATGCTGAAGTCTGATCCTGCAGGGTGCACTGAGGAGCTGAAGCAGACAGAGAAGTGCATGCTGCCAGAGTGCCCCATTCACTGCATGGTCTCGGAGTGGTCCGAGTGGTCGCAGTGCAACAAGTCCTGTGGTAAAGGACACACCATTCGAACCCGTATGGTTAAACTGGAGCCGCAGTTTGGGGGCAGTGCTTGTCCCGAGACCATTCAGAGGAAGAAATGCAAGATCAGGAAGTGCAGGGCAAAAATAAAGGAGGACAGAGGAGGTGCAGTTgctggaggaggaaagagaagtAGACGGGGTAAACAGGGAAGAGATGCAGCGGCAGAGGATCAGCCAGGTTGCAGGATGCAGCCGTGGTCCAGCTGGACGGACTGTACCAAAATATGCGGAGGGGGGATCCAGGAACGTTTCATGATGGTGAAGAAAAGAGCTAAAGGCACTCTGATGGCCAGCTGTGAGAACCGGAAGGAGATCCGTGCCTGTAACATTCATCCCTGCTAGGGGGTACTACTGAGTTATAGTGGAGGGGAGGGAAGTAGCAGGTAAAACACAAGTTGTGAAAATATGGGTTTATTTGATAAGATGATAATGGGGAACTTTTTGTTTACAGGGAGGTAAGGTTAAGGGAGGGTGAGATTATGGGCTAGTCTGACCCTTCAGAAACAGGATATGGGTTTTGGTAAGTAGAGGGGAAGGGAGGAGAAAATAGGAAAAAAACGAGAAGATGGCTGTTTAGTGAAGCCAGTGTAGACATTTAGTTAACAGGGATGACATTTACTTTTGACCACAATAGAAGTATGAGAGTAATGTCTGTGTCCTGCAAAAAAATCAAGAAACAACTACAATAGCCTACAATAGTAGTTTGCCTTTAATGCACACATTTTTGTGTAGTTCCAGTAGTTTTGGTCTCTGGAGTATGAAAATTCCCTGAGAATTCATGCCAAAATCTGTTTCTATTTTCTAAGGAAAAAAACCACATGAACCTGGGATTTTTGGCACGTGTCTGCTTTGTAATGTATTTACTGACACAAAGATGCCTTTTCCAACCATCATTAATGATACCATTGTAGTGTCATAGCTATAGTTCGCCCTTGAAATGACAGTATTGCACCTATACAACTGGATCAACTTTCTTCTGATTCTTTTTCATCTTAAAATGGCAAGCTGCTGTTGTTTATAATGAGTGTGAAAAATGCAAAGTAatctttaaatgaaaacaagggAGACGGTTCAACTTAATAAGATGTGTCGGCTGGCATCTCCTAGAGGTATAGTGGTGTGTTTACGCATATATAAATAACCATCACTGTGCAGGAGGAACTACCATATACCTACCTAAAGATATGTACAACTTGTAGAGGGAGACTGCAGGCAATCATGTTACAATCTCTAACATCATCTGTGGTGTTTCTGTTACACAAGAAACTTTTGTTCCCTAACttacaaaacaataataattgaaGTACCCCCTTAAAAGAGAACCAAGCCTGGGGAGGAACACTACCCTAAGGACAAACTTAAACAGAGAACAGAAATCCCATCCCCTATTAGAAcataattcattttaaaatcatgGACCAACTTTCAACCCTAGTATGGAATTTTGTAAGTTTTCAACTGACagaaattgataaaaaagcaaaaaacagacTAAAATAAAGGATTTCTTTTCAATTTTTTGCAAGACATAGATACAGGAATGTTCTAAAGACTTATGGATGTACTGTATAACTACTATCTAACCAACCCTTAAACCCTTATAAATACACTACTATCTAAGTACTAAAAAACACGTTCCCTAATTAACAGATGCATTTAAATGGAGATATTTTATACTGTTACAATTAGTCTTTATAAACTGTATGGCTGTTTATCTGTTGTTTCAGCATTAAACCTCTTATTTTAGCATGTG

Function

symbol description
spon1 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in cell adhesion. Predicted to act upstream of or within positive regulation of protein binding activity; positive regulation of protein processing; and regulation of amyloid precursor protein catabolic process. Located in extracellular space. Colocalizes with collagen-containing extracellular matrix.

NR:

description
PREDICTED: spondin-1

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG:

id description
K24427 SPON1; spondin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809345.1 True 4202 mRNA 0.48 16 31737723 32220761

Neighbor

gene id symbol gene type direction distance location
LOC120563984 syt9,LOC108243479,LOC103466244,LOC105929741,LOC107389215,LOC106536968 coding upstream 237829 31190066 ~ 31499894 (+)
LOC120563983 NA coding upstream 352138 31382311 ~ 31385585 (+)
LOC120563346 LOC106024097,LOC105418589 coding upstream 799521 30932443 ~ 30938202 (+)
LOC120564223 parva,LOC103379681 coding upstream 1020568 30683862 ~ 30717155 (+)
LOC120563894 NA coding upstream 1153493 30481941 ~ 30584230 (+)
LOC120563341 NA coding downstream 341406 32562167 ~ 32565265 (+)
LOC120563342 LOC106532362 coding downstream 344498 32565259 ~ 32566745 (+)
LOC120564016 LOC100694473,LOC102308285,LOC101472020,LOC103379534,LOC102194645 coding downstream 448517 32669278 ~ 32694390 (+)
LOC120564017 NA coding downstream 484973 32705734 ~ 32717437 (+)
LOC120564018 NA coding downstream 498744 32719505 ~ 32736806 (+)
G89235 NA non-coding upstream 202890 31534203 ~ 31534833 (+)
LOC120563988 NA non-coding upstream 283201 31449506 ~ 31454522 (+)
G89222 NA non-coding upstream 340142 31394671 ~ 31397581 (+)
G89214 NA non-coding upstream 466595 31270068 ~ 31271128 (+)
G89207 NA non-coding upstream 489399 31243199 ~ 31248324 (+)
G89505 NA non-coding downstream 565959 32786720 ~ 32789113 (+)
G89506 fa2h non-coding downstream 569087 32789848 ~ 32790103 (+)
G89507 NA non-coding downstream 569776 32790537 ~ 32791233 (+)
G89525 NA non-coding downstream 663162 32883923 ~ 32884234 (+)
G89526 NA non-coding downstream 663694 32884455 ~ 32884709 (+)
LOC120564288 LOC106676433,LOC101470282,LOC102193107,LOC103142492,LOC103466241,LOC102310553 other upstream 55564 31540981 ~ 31682159 (+)
G89164 NA other upstream 655843 31081015 ~ 31081880 (+)
LOC120564323 LOC100693668,LOC101468938,LOC102215274,LOC108243483 other upstream 848026 30752581 ~ 30889697 (+)
LOC120563900 NA other upstream 1113740 30609213 ~ 30623983 (+)
LOC120563901 LOC107562792 other upstream 1256688 30436920 ~ 30481035 (+)
G89409 NA other downstream 269382 32490143 ~ 32496562 (+)
LOC120564557 ccdc73 other downstream 372823 32593584 ~ 32627674 (+)
G89540 znf319,LOC104967809,LOC102797175 other downstream 685175 32905936 ~ 32911727 (+)
klhdc4 klhdc4,LOC104957904,LOC104953735 other downstream 865095 33085856 ~ 33115541 (+)
jph3b jph3,LOC103360672 other downstream 897440 33118201 ~ 33230110 (+)

Expression


Co-expression Network