trnaf-gaa_11


Basic Information

Item Value
gene id trnaf-gaa_11
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 6517635 ~ 6517707 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_394
gccgaaatagctcagttgggagagtgttagactgaagatctaaaggtccctggttcgatcccgggtttcggca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_394 True 73 tRNA 0.52 1 6517635 6517707

Neighbor

gene id symbol gene type direction distance location
LOC120566943 NA coding upstream 349103 6156479 ~ 6168532 (+)
cenpu NA coding upstream 394050 6111094 ~ 6123585 (+)
LOC120567168 LOC103373597 coding upstream 408480 6079087 ~ 6109155 (+)
st3gal5 NA coding upstream 440026 6032764 ~ 6077609 (+)
LOC120567500 NA coding upstream 516722 6000777 ~ 6000913 (+)
LOC120567385 LOC107574244 coding downstream 30220 6547927 ~ 6552607 (+)
trnaf-gaa_30 NA coding downstream 31022 6548729 ~ 6548801 (+)
trnaf-gaa_31 NA coding downstream 31540 6549247 ~ 6549319 (+)
trnaf-gaa_32 NA coding downstream 32059 6549766 ~ 6549838 (+)
LOC120567386 NA coding downstream 37145 6554852 ~ 6556324 (+)
trnaf-gaa_10 NA non-coding upstream 6377 6511186 ~ 6511258 (+)
trnaf-gaa_9 NA non-coding upstream 8027 6509536 ~ 6509608 (+)
G103742 NA non-coding upstream 10468 6506866 ~ 6507167 (+)
G103739 NA non-coding upstream 34720 6482596 ~ 6482915 (+)
G103734 NA non-coding upstream 148445 6368865 ~ 6369190 (+)
trnaf-gaa_12 NA non-coding downstream 534 6518241 ~ 6518313 (+)
trnaf-gaa_13 NA non-coding downstream 1140 6518847 ~ 6518919 (+)
trnaf-gaa_14 NA non-coding downstream 1658 6519365 ~ 6519437 (+)
trnaf-gaa_15 NA non-coding downstream 3114 6520821 ~ 6520893 (+)
trnaf-gaa_16 NA non-coding downstream 4051 6521758 ~ 6521830 (+)
irf2 irf2 other upstream 327071 6177996 ~ 6190564 (+)
G103305 NA other upstream 2448021 4068811 ~ 4069614 (+)
smad5 LOC103363483,LOC104920560,LOC103391130,LOC101064562 other upstream 2644802 3860635 ~ 3872833 (+)
G103034 NA other upstream 3001918 3514023 ~ 3515717 (+)
zgc:110843 cisd1 other upstream 3266004 3247545 ~ 3251631 (+)
trnam-cau_9 NA other downstream 338475 6856182 ~ 6856254 (+)
G103836 NA other downstream 1103931 7621638 ~ 7643183 (+)
LOC120567362 NA other downstream 1821709 8339416 ~ 8346534 (+)
LOC120567404 LOC104951845 other downstream 1956909 8474616 ~ 8476449 (+)
G104301 NA other downstream 3400165 9917872 ~ 9918315 (+)

Expression


Co-expression Network