trnaf-gaa_17


Basic Information

Item Value
gene id trnaf-gaa_17
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 6524415 ~ 6524487 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_400
gccgaaatagctcagttgggagagcgttagactgaagatctaaaggtctCTGGTTcaatcccgggtttcggca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_400 True 73 tRNA 0.51 1 6524415 6524487

Neighbor

gene id symbol gene type direction distance location
LOC120566943 NA coding upstream 355883 6156479 ~ 6168532 (+)
cenpu NA coding upstream 400830 6111094 ~ 6123585 (+)
LOC120567168 LOC103373597 coding upstream 415260 6079087 ~ 6109155 (+)
st3gal5 NA coding upstream 446806 6032764 ~ 6077609 (+)
LOC120567500 NA coding upstream 523502 6000777 ~ 6000913 (+)
LOC120567385 LOC107574244 coding downstream 23440 6547927 ~ 6552607 (+)
trnaf-gaa_30 NA coding downstream 24242 6548729 ~ 6548801 (+)
trnaf-gaa_31 NA coding downstream 24760 6549247 ~ 6549319 (+)
trnaf-gaa_32 NA coding downstream 25279 6549766 ~ 6549838 (+)
LOC120567386 NA coding downstream 30365 6554852 ~ 6556324 (+)
trnaf-gaa_16 NA non-coding upstream 2585 6521758 ~ 6521830 (+)
trnaf-gaa_15 NA non-coding upstream 3522 6520821 ~ 6520893 (+)
trnaf-gaa_14 NA non-coding upstream 4978 6519365 ~ 6519437 (+)
trnaf-gaa_13 NA non-coding upstream 5496 6518847 ~ 6518919 (+)
trnaf-gaa_12 NA non-coding upstream 6102 6518241 ~ 6518313 (+)
trnaf-gaa_18 NA non-coding downstream 10239 6534726 ~ 6534798 (+)
trnaf-gaa_19 NA non-coding downstream 10757 6535244 ~ 6535316 (+)
trnaf-gaa_20 NA non-coding downstream 11505 6535992 ~ 6536064 (+)
trnaf-gaa_21 NA non-coding downstream 12116 6536603 ~ 6536675 (+)
trnaf-gaa_22 NA non-coding downstream 13241 6537728 ~ 6537800 (+)
irf2 irf2 other upstream 333851 6177996 ~ 6190564 (+)
G103305 NA other upstream 2454801 4068811 ~ 4069614 (+)
smad5 LOC103363483,LOC104920560,LOC103391130,LOC101064562 other upstream 2651582 3860635 ~ 3872833 (+)
G103034 NA other upstream 3008698 3514023 ~ 3515717 (+)
zgc:110843 cisd1 other upstream 3272784 3247545 ~ 3251631 (+)
trnam-cau_9 NA other downstream 331695 6856182 ~ 6856254 (+)
G103836 NA other downstream 1097151 7621638 ~ 7643183 (+)
LOC120567362 NA other downstream 1814929 8339416 ~ 8346534 (+)
LOC120567404 LOC104951845 other downstream 1950129 8474616 ~ 8476449 (+)
G104301 NA other downstream 3393385 9917872 ~ 9918315 (+)

Expression


Co-expression Network