G127054


Basic Information

Item Value
gene id G127054
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 25825272 ~ 25826290 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU170998
AAAAAGCGGTCAACTACCATTCTAATGGATCGAAGAATAGCCAAAATGGCAAAGGCTCAACCAATGATCAGCTCCTGGAAAATCAAAGACTTAAAGTTACCTGTGAGTACTGTTAGGATCAGAAGAAGGCTATGTGAAGCAAAGCTATCAGATAGAAGCCCCCGCAAAGTCCCATTGCTGAGAAAAAGAGACCTGTACTGAATAGGTTGAAATTTGCCAAAGGACACATTGACTGGCCAAAGGAGAATTCTGGGGACTGATGAGAGCAAAATTGTTCTTTTTGGGTCTAGGGGCGGCAGACAGTTTGTCCGACGACCCCCATGCACTGAATTCAAGCCACGGTACTGTGAAGACAGTAAAGCATGGTGGTGCAAAATCATGTTATGgggatgtttctcatactgtggTGTTTGGCCTATTTATCGCATACCAGGGATCATGGATCAGTTTCAATACATCAAAATACTTGAAGAGGTGATGTTGCCTTATGCTGAAGAGGAAATGCCTTTGAAATGGGTctttcaacaagacaatgacccaaaacaaCACCAGTAAGCGTGCACAGTCTTGGTTCCAGATGAACAAGATTGATGTTATGGAGTGGCCAGCCCAATTCCCAGACCAAAAATGCTGTTTCTGAGGCAAAACCCAGTAATGCAGAGGAATTGTGGAATGTAGTGCAATCGTCCTGGGCTGGAATACCTGTTCATAGGTGCCAGAAGTTGGTTGACTCCATGCAACACAGATGTGAAGcagttctcagaaataatggttATGCAACTAAATATTAGTGCAGTGATTCAAAGTCAAGCAAACCTTTGAGACATTTTTCAGTTgatacagtaaatgtttgagtttgtaaagaaaaatgcaaatactGCTATTTTTTTGAACAGCCTAATATTCCCTTTTCTTCACTTTGTGTAAAGGTATAACACAAACTTGATcaattttggtcatgttttgATTTGGAATTGAATGTGCAGTGTTCCCAATGCATTGATATTATGGAATTAAAA

Function

GO:

id name namespace
GO:0006376 mRNA splice site selection biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0000245 spliceosomal complex assembly biological_process
GO:0008380 RNA splicing biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170998 True 1019 lncRNA 0.41 1 25825272 25826290

Neighbor

gene id symbol gene type direction distance location
lonrf2 lonrf2,LOC100703468,LOC102778803,LOC102208940 coding upstream 2807 25805312 ~ 25822465 (+)
pdcl3 pdcl3,LOC106586481,LOC106582251 coding upstream 43357 25777784 ~ 25781915 (+)
neb neb coding upstream 81519 25677679 ~ 25743753 (+)
arl5a arl5a,LOC100697458,LOC107389652,LOC102234233 coding upstream 149128 25665946 ~ 25676144 (+)
stam2 stam2 coding upstream 196668 25609762 ~ 25628604 (+)
LOC120569244 map4k4,LOC107101754,LOC103370377,LOC100703199,LOC102310984,LOC101483446,LOC103134843,LOC106951384,LOC104918237,LOC106926661,LOC103391611,LOC107389642,LOC102194576,LOC102777943 coding downstream 8369 25834659 ~ 25948472 (+)
LOC120569279 NA coding downstream 126016 25952306 ~ 25961182 (+)
LOC120569280 NA coding downstream 136712 25963002 ~ 25989635 (+)
LOC120569283 NA coding downstream 169294 25995584 ~ 26015815 (+)
il1rl1 NA coding downstream 201538 26027828 ~ 26074339 (+)
G126904 NA non-coding upstream 605596 25216958 ~ 25219676 (+)
LOC120569827 NA non-coding upstream 608762 25213266 ~ 25216510 (+)
G126807 NA non-coding upstream 941964 24882094 ~ 24883308 (+)
G126802 NA non-coding upstream 965910 24844976 ~ 24859362 (+)
LOC120570481 LOC106579430,LOC106609078,LOC107088658 non-coding upstream 972312 24849398 ~ 24852960 (+)
LOC120570231 NA non-coding downstream 255599 26081889 ~ 26084505 (+)
G127095 NA non-coding downstream 271983 26098273 ~ 26098541 (+)
G127203 NA non-coding downstream 441595 26267885 ~ 26268101 (+)
G127204 NA non-coding downstream 466153 26292443 ~ 26292789 (+)
G127209 NA non-coding downstream 526597 26352887 ~ 26356909 (+)
cacnb4a cacnb4 other upstream 160845 25630107 ~ 25664427 (+)
fzd5 LOC104950716,LOC108238837 other upstream 1430287 24372471 ~ 24394985 (+)
sestd1 sestd1 other upstream 1527054 24277157 ~ 24298218 (+)
cwc22 cwc22 other upstream 1625437 24183949 ~ 24199835 (+)
dachd LOC107389725,LOC105927577,LOC103357501,LOC103134744 other upstream 2725189 22978602 ~ 23100083 (+)
G127165 LOC100691947,LOC102776592,LOC101469272,LOC102213137 other downstream 290698 26116988 ~ 26129879 (+)
mphosph8 mphosph8 other downstream 585187 26411477 ~ 26439285 (+)
zmym2 zmym2 other downstream 623153 26449443 ~ 26484088 (+)
LOC120569906 NA other downstream 887060 26713350 ~ 26717397 (+)
prkag3b prkag3,LOC103374929,LOC105937223,LOC107101406 other downstream 2562353 28388643 ~ 28409839 (+)

Expression


Co-expression Network