hspd1 (hspd1)


Basic Information

Item Value
gene id hspd1
gene name hspd1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 29615962 ~ 29626071 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817591.1
GCCGGTAAATCACCCGGATGTGATAGGCCATGTGCAGTCCCGTCTCAGGAGCTCTCCACACGGCTTGTCCTTTTACCTCCAGTATCATTCCGTCTCGCAGACGTGCATCTTGTATCAGCTACAAGCCTCTTACCTCACAAAGATGTTTCGTTTACCAACCATCATGAAGCAGGTGAGGCCTGTGTGCCGGGCGCTGGCGCCTCACCTCACACGAGCCTACGCTAAGGATGTGAAGTTTGGAGTGGATGCTCGTGCCCTAATGCTGCAGGGAGTGGACCTGCTGGCTGACGCTGTGGCTGTCACCATGGGCCCAAAGGGTCGCAATGTCATCATCGAGCAGAGCTGGGGCAGCCCCAAGGTCACCAAGGACGGCGTGACGGTGGCCAAGAGCATCGACCTGAAGGACAAGTACAAGAACATCGGTGCCAAGCTGGTGCAGGACGTGGCCAACAACACCAACGAGGAGGCCGGAGACGGCACCACCACCGCCACAGTGCTGGCTCGGGCCATCGCCAAGGAGGGCTTCGACACCATCAGCAAAGGCGCCAACCCCGTGGAGATCCGCCGGGGGGTCATGATGGCCGTAGAAACCGTCATCAAAGAGCTGAAAAATCTCTCCAAGCCAGTCACGACCCCCGAGGAGATCGCACAGGTTGCTACAATCTCAGCCAATGGAGACGTGGAGATTGGTACCCTAATTTCCAACGCCATGAAGAAAGTCGGCCGCAAGGGAGTCATCACCGTCAAGGATGGGAAGACCCTGCACGATGAGCTGGAGATCATTGAGGGCATGAAGTTTGACCGTGGTTACATCTCCCCTTACTTCATCAACACTGCCAAAGGTCAGAAGGTTGAGTTCCAGGACGCCTACCTGCTGCTGAGCGAGAAGAAGATCTCCAGCGTCCAGAGCATCGTGCCGGCCCTGGAGATCGCCAACCAGCACCGTAAACCGCTGGTTATTGTGGCTGAGGATGTGGACGGAGAGGCCCTCAGCACCTTGGTTCTCAACAGGCTCAAGGTGGGGCTCCAGGTGGTGGCTGTTAAAGCTCCAGGATTCGGAGACAACAGGAAGAACCAGCTAAGGGACATGGCCGTCGCCACCGGGGGCACTGTGTTTGGAGATGATGCAGTAGGTCTGGCTCTTGAGGACATCCAGGCTCACGACTTTGGTAAGATCGGTGAGGTGCAGATTACCAAAGACGACACCTTGCTGCTGAGGGGAGGCGGCAGCCCCGCGGAGGTCGAGAAGCGTGCGGCAGAGATCGTCGAGATGCTGGAGAGCACCACCAGTGACTACGAGAAGGAGAAGCTCAACGAGAGGCTGGCCAAGCTGTCCGACGGCGTGGCGGTACTCAAGATCGGAGGAACGAGTGACGTGGAGGTGAACGAGAAGAAGGACCGCGTGACGGACGCTCTGAACGCCACACGGGCAGCGGTGGAGGAGGGCATCGTGCCAGGCGGGGGCTGCGCCCTGCTGCGCTGCATCCCAAGCCTCGACACCGTCAAAACTGTCAATGCTGACCAGAAGATAGGTGTGGAGATCATCAGACGGGCGCTCCGTATCCCCGCCATGACCATCGCTAAAAATGCGGGCGTGGAGGGTTCGCTAGTGGTGGAGACGATCCTGCGGGGCTCAGCTGAGCTCGGCTACGACGCCATGCTGGGGGAGTACGTCAACATGGTGGAGAAGGGCATCATCGACCCCACCAAGGTGGTAAGGACGGCCCTGATGGACGCCGCAGGAGTCGCCTCCCTGCTCTCCACTGCCGAGTGCGTCGTCACGGAGTTACccaaggaggagaaggagatgcCAGCGGGCGGCATGGGCGGCATGGGAGGCATGGGCGGCATGGGAGGCATGGGTTTCTAAGCCAATCCTCCTGACTTCCTGTACAGACTTATATAGGCAGAGTGGTGCTGGGGGCGGTGTCTGAGGGAAAAAATCCTACAAGAAAACTGCACCCACCTCCACCAAGCTTTGCCCAAACTGACTGGCCATGATGAGTATGTTGGAGCTGCCCTCGCCCTCCCACGACTTCACATACCTCCCATCTCTTCGTCCAGGGTTTCTGGAGGAGTCGGCCTCGCCCGACgcaaagaaaataatcagcgAATGAGAGCCCATCAAACCCATTTACTACACCTCTGCTCTGCTCTACTCTAACGGCTGAAACACTCGACAGAAAGAAAGATGCTTATCCAGATTTCCATACAGTTGTCATCTCTGTAAAGTGATTATTAAAGTGGTCTAAGAACATAGTAAACCTATTGTTGATGCTCTGCATTACTGTAAGCACCAGAGAAGATGCCTAGCCAGGATCATGTCAGTGTCCTTTCACTTTTGTCATAGTATTTTGttaattcttgttttttttatatatatatatatattaatctgtttttgtttccccccccccacccagctAACATTATGTAAGTTAAAATCTGTCATTTGATTTAATTAAACCGATTTTTCTTACAGAGCTTTTGAGGATTTTCTGTCTCTGAAGTGACGTTACATTGCATGTCCTTGTACGTGACCACAATTGGGTGAAGAGTGCCTAAATTACCAGAGTTGGAGTATCACCAGGGGCctgtttaaaatttttttacaaTAATGTTTACGGAGATGTCTGTGGTCATCGTTTTCATGCATGCAGcattgtgagtttttttttctttcagatcATCAGCCTTTACGTTGTCGATGATCTCCATGGGGTCAGCTGATTGAATGTGAGAGGTGGGGCTCAGCTTACAAAGCAGTTTTTGGACCATTCAAGGTCTTGGCTACGAAGTCTAAATGTGAAAACGTGTGCTGTTAAACATTGACCTTCATTTCTCCCCTCGTAACGCTCTGCTTTAACTACGAAACCAGAAAACTACAGTAACTAGATATTTTACTGACCGAACACAGGATATTAGTCCTTTGCAAAACGGCAAATAGCGGTGATCATTCGACTTCTGTTTTGTACAATGTAGACAATGATTGAtggtgattttcttttctttttttatttaataaattcaATTGTTCAGA

Function

symbol description
hspd1 Predicted to enable chaperone binding activity. Acts upstream of or within fin regeneration; regulation of cell population proliferation; and regulation of neutrophil chemotaxis. Located in mitochondrial matrix. Is expressed in several structures, including anterior neural keel; digestive system; mesoderm; musculature system; and nervous system. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); autistic disorder; glucose intolerance; hereditary spastic paraplegia (multiple); and hypomyelinating leukodystrophy 4. Orthologous to human HSPD1 (heat shock protein family D (Hsp60) member 1).

NR:

description
PREDICTED: 60 kDa heat shock protein, mitochondrial isoform X1

GO: NA

KEGG:

id description
K04077 groEL, HSPD1; chaperonin GroEL

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817591.1 True 3040 mRNA 0.52 11 29615962 29626071

Neighbor

gene id symbol gene type direction distance location
sf3b1 sf3b1,LOC100380860 coding downstream 13225 29584942 ~ 29602737 (-)
ankrd44 ankrd44,LOC102781020 coding downstream 35748 29539342 ~ 29580214 (-)
si:dkey-57a22.11 NA coding downstream 123284 29483771 ~ 29492678 (-)
LOC120570579 LOC104932533,LOC104960785,LOC102289927 coding downstream 132289 29479412 ~ 29483673 (-)
LOC120569289 LOC100695514,LOC102778272,LOC103367768,LOC104960783 coding downstream 137026 29476121 ~ 29478936 (-)
rftn2 rftn2 coding upstream 17593 29643664 ~ 29678166 (-)
satb2 satb2,LOC103367524 coding upstream 274184 29900255 ~ 29964320 (-)
dnajb11 dnajb11 coding upstream 368956 29995027 ~ 30005938 (-)
lcmt2 lcmt2 coding upstream 402594 30028665 ~ 30045755 (-)
dbr1 LOC107551939,LOC101160048 coding upstream 433096 30059167 ~ 30070582 (-)
G127995 NA non-coding downstream 939 29612222 ~ 29615023 (-)
G128006 pikfyve,LOC107595854 non-coding downstream 84938 29530486 ~ 29531024 (-)
G127902 LOC103367763,LOC102293787,LOC101466508 non-coding downstream 164357 29450747 ~ 29451605 (-)
LOC120569974 NA non-coding downstream 180149 29435022 ~ 29435813 (-)
G127900 NA non-coding downstream 182312 29432837 ~ 29433650 (-)
G128027 plcl1,LOC107374039 non-coding upstream 166539 29792610 ~ 29795310 (-)
G128028 NA non-coding upstream 171028 29797099 ~ 29797521 (-)
G128031 NA non-coding upstream 182175 29808246 ~ 29820796 (-)
G128030 NA non-coding upstream 186418 29812489 ~ 29814765 (-)
G128032 NA non-coding upstream 230998 29857069 ~ 29857326 (-)
G127923 LOC103391627,LOC101464856 other downstream 222819 29387976 ~ 29393143 (-)
G127924 LOC103391627,LOC101464856 other downstream 227390 29388070 ~ 29388572 (-)
G127903 LOC101464856 other downstream 269073 29346079 ~ 29346889 (-)
LOC120569310 NA other downstream 321283 29287715 ~ 29294679 (-)
etv5a etv5 other downstream 523034 29078197 ~ 29092928 (-)
G128025 plcl1 other upstream 150969 29777040 ~ 29777433 (-)
G128026 LOC103372056,LOC102784025 other upstream 155883 29781954 ~ 29783205 (-)
kcnh3 LOC102215587,LOC101479217,LOC102787819,LOC100702937,LOC102305604 other upstream 474435 30100506 ~ 30279530 (-)
G128435 NA other upstream 1862951 31489022 ~ 31491705 (-)
LOC120569384 rps24,LOC102780737 other upstream 2256658 31882729 ~ 31936558 (-)

Expression


Co-expression Network