pih1d2 (pih1d2)


Basic Information

Item Value
gene id pih1d2
gene name pih1d2
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 35944437 ~ 35948800 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU29835
GCCAGTCAGACCCCAGCTGCCCTTCTGCAGCAGATCTCCTCTCTACATTCAGAGAAACAACACGAGGACCCAGCAGCCCAAATTATCTGCAGAACTGCAGAGAACAAAAAGAAGGATTTGATCCAGGTCATCTCCAGTAAATTTGTGCCGCCTCAGAAGCCAGAGTACCAACTCGAGGTGAAGACTGATAACGAAGGAGTTGCTCGCAGCATGGAGCTGACAGTGGAGCTGCCAAAGGTTTGCTCCATGTCAGAGTGCCAGCTGAGAATCTCCAAGGACGACGTCTTGCTGGAAGTGGAGGATGTCTACTATTTGCTTTTAGAATTCCCCAAAACTGTGATTGAAGACACTGCATCTGCCATTTTTAACAAGAAGAAACGAATGCTTACTTTGAGGGTGGATGTGGATGTTTTCTGACCATTTGACTTCATGGAGAAACAAATGCACACAGTAGTGATCGGTCGTGCTGGGAATGTGCTGAAGAAACTGGGAAGCTAAGAGTGAAATCTGGAACTGAGAATCCTCAAAGTACataaccaaaacaaacaaaataagccTTGTGAACACATTACGCTACGGAGGGACTCATGCTCTGCCTCAAAACTTCAGCTAACAAACAATTAACAGCTCCCCATGTAAACTGATCCGCTCCCAAATCCAAAATGATGTTTTTACTGAAGCAAATATTTCACTGTGTCCCTTTGTGCTGTGTGGGTTGATCTGCAGCAGCAAATGCAATTCTTACCACTccccaaaaaaattaattaactttAATAACAATCTGTGggttttgtttattaatgtgtgGGTGTATGAGTGGAGGTGTATAATGGCTAGGAGCTGGTATACAGTGTCATTACCGTACTCTGGGGGAATAATTcacaataaaatgatccatgCAATAATTCATgtttattaaaacattaaaatggatGCAGAACAACAACATCACTATTTGGCAATCTGGAACGTGTGAAAAATGTcagtaaacatttattttaaggtTTGCATACTATGCACTGATTACAGCTTTTTAGAGCGCAGCTTATTATGTGTTATTTTTTGGAAAATCACATTAACTTGCTTTCATATTTCAGTTTCAAGTATCACAATACTGACCATTAATTGGAAGTCTCacatattaattaatttatgaGCTGCAAACAATGTATAATATCCATTCCTTTAACAAAACATCAAGTCAAATTCTTCATATGAAACATTCACTTTGAAAACATGGTTTTGTATCGAAATGGTGTTATACCCATTGGTCCCAGTGAATTGTATTATAACTTCTCTATTATGGCATCACAAGTATTTTCAGTGAAATCCTGGTCCAGTGGGAACAACTGAGGTTTGCAGTGGTGATATTGGGTCTTTTGAGCTCTACCTCCTCTCTCCGTGGTCCTCCTCCACCCACGCTACAATCTTCCCTTCCCAGCCAGGCACGACTGCTCCATCCTGGAATACCTGAACAGCCAATATCCAGCATTTACATATCTAAGAACCACTCACTTCTATGACGTACAAAGGTCTGgagaaaaagtgaaaatgacTACTCAGTCCTCCTGCAGTGTTTTGAAGTATAGCGCAGCCACAGCTATTATTAGCATATCTTACTCCATAACTGCCATTTTATATTTGCCTGCTGAAGCTGATGTAAAAAGAAATAAGGGCTATAATTTTACTCCCACGCCTACCTCCTCTTTCACTGTGCCAAACTCTGGGTCGAGGGCCTTGAAGTGGTATCTGAAACTGCCTTGTCTGTCCACAGCAGCCTTGAAGTCTCGTAGTGTCACCTCA
>XM_039782413.1
AGCGTTGATTCTTtttacgttagctagctagctattgtTTTAGCTATATTTAGAGCCTCTTTCAATAGCAAAATTAATTTGTAATACTGTAGACAAGCTGGTTTTCTAACGTCAGCGTTTCTAGTTaacctgttttttcttttcagacagctagctagcataaCTAACGTTAGTGGCTAGTTAGCGTTAACTCCAAAATAAGACAGTCACCTTAAGATGGCCTCCATTGGCAGTACAGCGGATGTTTTACATCAAGTCAACCAGTTTTGGTCCATCCTGGATGATCTTTCTCAAAATGACCCCACAGCCTACCGCAAGTTCATTGGGAAACAGATGAAGGAAGGAGCTGAATTCACTGCACCGCCTGAACTCGACTCTTGTTTGTGCACTGAAATAGTGGAGCCCAAGAAAGGGTCACTGTATATCAACATATGCAGCTGGAAACGTGTGCCTGCACCTCAGGATCCCAGCAGGCCTTTACCTGTGTGTGCAGGAAAACTGGAAACAGACACAAATGAAGgtcaagGTTGGTACACTGTGTTGGATGTGGCATTAAACCCTGCAGTGCTACAGGAaagtaagaaaaacaaaacagaagtgTATATGCTGGCCCTGAGCTTTGCCCAGCAGCAGCATGGGATGAGGTTAACTCAGCAGTACACTGTCGTCAGCTGCAGCCCAAAAAGTAGCCCAGATGACTTGCACCGCCGGCTTGGGTTTCGGCAGTGGCCTAACACCTCCGGACAACCAGACACGGCCAGTCAGACCCCAGCTGCCCTTCTGCAGCAGATCTCCTCTCTACATTCAGAGAAACAACACGAGGACCCAGCAGCCCAAATTATCTGCAGAACTGCAGAGAACAAAAAGAAGGATTTGATCCAGGTCATCTCCAGTAAATTTGTGCCGCCTCAGAAGCCAGAGTACCAACTCGAGGTGAAGACTGATAACGAAGGAGTTGCTCGCAGCATGGAGCTGACAGTGGAGCTGCCAAAGGTTTGCTCCATGTCAGAGTGCCAGCTGAGAATCTCCAAGGACGACGTCTTGCTGGAAGTGGAGGATGTCTACTATTTGCTTTTAGAATTCCCCAAAACTGTGATTGAAGACACTGCATCTGCCATTTTTAACAAGAAGAAACGAATGCTTACTTTGAGGGTGGATGTGGATGTTTTCTGACCATTTGACTTCATGGAGAAACAAATGCACACAGTAGTGATCGGTCGTGCTGGGAATGTGCTGAAGAAACTGGGAAGCTAAGAGTGAAATCTGGAACTGAGAATCCTCAAAGTACataaccaaaacaaacaaaataagccTTGTGAACACATTACGCTACGGAGGGACTCATGCTCTGCCTCAAAACTTCAGCTAACAAACAATTAACAGCTCCCCATGTAAACTGATCCGCTCCCAAATCCAAAATGATGTTTTTACTGAAGCAAATATTTCACTGTGTCCCTTTGTGCTGTGTGGGTTGATCTGCAGCAGCAAATGCAATTCTTACCACTccccaaaaaaattaattaactttAATAACAATCTGTGggttttgtttattaatgtgtgGGTGTATGAGTGGAGGTGTATAATGGCTAGGAGCTGGTATACAGTGTCATTACCGTACTCTGGGGGAATAATTcacaataaaatgatccatgCAA

Function

symbol description
pih1d2 Acts upstream of or within axonemal dynein complex assembly. Predicted to be part of R2TP complex and ribonucleoprotein complex. Predicted to be active in cytoplasm. Is expressed in Kupffer's vesicle; floor plate; otic placode; and pronephric duct. Orthologous to human PIH1D2 (PIH1 domain containing 2).

NR:

description
PIH1 domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU29835 True 1803 lncRNA 0.41 2 35946848 35948800
XM_039782413.1 False 1658 mRNA 0.45 5 35944437 35947899

Neighbor

gene id symbol gene type direction distance location
tmprss5 tmprss5,LOC102793298 coding upstream 119 35937906 ~ 35944318 (+)
zbtb16b LOC104923551,LOC102781295 coding upstream 35777 35888002 ~ 35908660 (+)
ncam1b NA coding upstream 62973 35799164 ~ 35881464 (+)
arhgap32a LOC103362430,LOC102308114,LOC101484892,LOC102080300 coding upstream 374481 35537925 ~ 35569956 (+)
thyn1 thyn1,LOC102795112 coding upstream 521293 35420134 ~ 35423144 (+)
nkapd1 LOC104959953 coding downstream 16670 35965470 ~ 35969062 (+)
gmfg gmfg,LOC105934520,LOC107090391 coding downstream 342592 36291392 ~ 36293421 (+)
tsr1 tsr1 coding downstream 379297 36328097 ~ 36338887 (+)
hic1 hic1 coding downstream 402296 36351096 ~ 36364143 (+)
rtn4rl1b rtn4rl1 coding downstream 602624 36551424 ~ 36707150 (+)
G21857 LOC108276647 non-coding upstream 514976 35427007 ~ 35429461 (+)
G21841 NA non-coding upstream 529661 35368050 ~ 35414776 (+)
G21822 NA non-coding upstream 653671 35289298 ~ 35290766 (+)
LOC120545939 NA non-coding upstream 664841 35242747 ~ 35279596 (+)
G21924 NA non-coding downstream 192616 36141416 ~ 36144692 (+)
G22015 NA non-coding downstream 352428 36301228 ~ 36302589 (+)
G22016 NA non-coding downstream 354511 36303311 ~ 36304077 (+)
G22018 NA non-coding downstream 358218 36307018 ~ 36310398 (+)
G22052 NA non-coding downstream 509725 36458525 ~ 36459282 (+)
igsf9ba igsf9b other upstream 409350 35456762 ~ 35535087 (+)
LOC120547286 mbnl1 other upstream 2024492 33843364 ~ 33919945 (+)
trim59 trim59,LOC102781275 other upstream 2670427 33262746 ~ 33274010 (+)
stx1a stx1a,LOC102292079,LOC102198818,LOC102795677,LOC108240947 other upstream 2814463 33041399 ~ 33129974 (+)
LOC120573710 col26a1,LOC102078035 other upstream 3025414 32898357 ~ 32919023 (+)
G22099 wdr81 other downstream 865048 36813848 ~ 36815638 (+)
G22106 wdr81 other downstream 879110 36827910 ~ 36828411 (+)
dynll2a dynll2a,LOC107554284 other downstream 1315010 37263810 ~ 37269299 (+)
G22263 LOC103133141 other downstream 1492072 37440872 ~ 37443828 (+)
robo1 robo1 other downstream 1986136 37934936 ~ 38304790 (+)

Expression


Co-expression Network