thyn1 (thyn1,LOC102795112)


Basic Information

Item Value
gene id thyn1
gene name thyn1,LOC102795112
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 35420134 ~ 35423144 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039787212.1
caattaaatcaagtGCACCAATAAGTTTGTTGACGTCAcgtgttgttggtttttttccccccgcgGGTTTAGTTAGATGGCTGACCACTTTGGAGCTCTCCTAATACGTCCATGCTTTGGAGCACTTCTTAGACCGTGAGAGATGCCACCAAAGACGAGGGCCAGAGTGAGTAAAAGAGCAGCAAACTCAGATGATGATGGTGAAAAGGTTGGCAGTAAGAGGAAAGCGGCAGCTTCTGTTGAGTCTGGGAAAAGTGAGGAGAGCTCCGAACCGCCACAGTACTGCCGCTGGCTGATGAAGTCTGAGCCCGAGAGCCGCTTTGAAAATGGGATCGACGTGAAGTTCGGGATCGAGGATCTGAAGGCGTTGCCTGATCAGACTGGCTGCTGGGACGGCGTCCGCAATTATCAGGCGCGCAATTTTATGAGGCAGATGAAAAACGAGCAGTTGGCTTTCTTTTACCACAGCAACTGCAAGGAACCTGGGATAGCCGGAGTCATGAAAaTTGTGAAGGAAGCTTATGTGGATCACACTCAGTTTGACAAGAAAGATGTCCATTTTGATGCAAACAGTAAACCAGACAACCCCAAATGGAGCATGGTAGATGTCCAGTATCAAAGAATGCTGAAGCGTTTTCTTCCTCTGTCTGAGCTGAAAAAGTACCACCTGCAGCACCGAGCCAAAGGAGGGCCTCTGAAGGACATGGCGCTTTTTACAAGAGCCAGGCTCTCCGTGCAACCCCTAACCACCGAGGAGTTTGACTTTGTCCTGAGTTTGGAGGATGAGGAGCCTCTGTGAGGGTTTGGACCAGATGATGCTTTGTGACACAGTGGACGCAGTGGCATCATTCACAGCACTGTAGTGTTTTCTTCTTGTTCATGAATAtgattaaatgtgtttttgtaaaataa

Function

symbol description
thyn1 Predicted to be active in nucleus. Orthologous to human THYN1 (thymocyte nuclear protein 1).

NR:

description
thymocyte nuclear protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039787212.1 True 912 mRNA 0.48 8 35420134 35423144

Neighbor

gene id symbol gene type direction distance location
esamb LOC102310176,LOC101482339,LOC103139652,LOC102795803,LOC102202421 coding upstream 7996 35355165 ~ 35412138 (+)
hspa8b LOC100696748,LOC102796684 coding upstream 177965 35236130 ~ 35242169 (+)
sytl2b LOC102313391,LOC102797281,LOC101479915 coding upstream 198960 35195143 ~ 35221174 (+)
picalmb picalm,LOC103364408,LOC102797574,LOC100697286,LOC104928943 coding upstream 227648 35168079 ~ 35192486 (+)
trnap-agg_1 NA coding upstream 373414 35046649 ~ 35046720 (+)
arhgap32a LOC103362430,LOC102308114,LOC101484892,LOC102080300 coding downstream 114781 35537925 ~ 35569956 (+)
ncam1b NA coding downstream 376020 35799164 ~ 35881464 (+)
zbtb16b LOC104923551,LOC102781295 coding downstream 464858 35888002 ~ 35908660 (+)
tmprss5 tmprss5,LOC102793298 coding downstream 514762 35937906 ~ 35944318 (+)
nkapd1 LOC104959953 coding downstream 542326 35965470 ~ 35969062 (+)
G21841 NA non-coding upstream 5358 35368050 ~ 35414776 (+)
G21822 NA non-coding upstream 129368 35289298 ~ 35290766 (+)
LOC120545939 NA non-coding upstream 140538 35242747 ~ 35279596 (+)
G21808 LOC100696479,LOC102233234,LOC101068011,LOC107083386,LOC104944607,LOC105939711 non-coding upstream 163359 35255192 ~ 35256775 (+)
G21728 NA non-coding upstream 405273 35014627 ~ 35014861 (+)
G21857 LOC108276647 non-coding downstream 3863 35427007 ~ 35429461 (+)
G21924 NA non-coding downstream 718272 36141416 ~ 36144692 (+)
G22015 NA non-coding downstream 878084 36301228 ~ 36302589 (+)
G22016 NA non-coding downstream 880167 36303311 ~ 36304077 (+)
G22018 NA non-coding downstream 883874 36307018 ~ 36310398 (+)
LOC120547286 mbnl1 other upstream 1500189 33843364 ~ 33919945 (+)
trim59 trim59,LOC102781275 other upstream 2146124 33262746 ~ 33274010 (+)
stx1a stx1a,LOC102292079,LOC102198818,LOC102795677,LOC108240947 other upstream 2290160 33041399 ~ 33129974 (+)
LOC120573710 col26a1,LOC102078035 other upstream 2501111 32898357 ~ 32919023 (+)
G21267 NA other upstream 2522571 32896624 ~ 32897563 (+)
igsf9ba igsf9b other downstream 33618 35456762 ~ 35535087 (+)
pih1d2 pih1d2 other downstream 521293 35944437 ~ 35948800 (+)
G22099 wdr81 other downstream 1390704 36813848 ~ 36815638 (+)
G22106 wdr81 other downstream 1404766 36827910 ~ 36828411 (+)
dynll2a dynll2a,LOC107554284 other downstream 1840666 37263810 ~ 37269299 (+)

Expression


Co-expression Network