bud23 (wbscr22)


Basic Information

Item Value
gene id bud23
gene name wbscr22
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 33033911 ~ 33040994 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039786899.1
GAAATACTTACGTCGCTTGCAAGTGACGTCAGTGTTCTTCACGTGTGGACCGTCGGCTATCGCAATGCTTTTAGCTTGTTTATGAACTGATATTACAAAATAACCCTTCACCTTCAGATAccggcacacaaacacaaggacAACCAACCATGACCTCCAGCTGTCGGCGGCCGGAACACTCAGCTCCTCCAGATGTGTTCTACAATGAAGCCGAAGCAAAGAAATACTCTCAAAACTCTCGAATGATTGAGATCCAGACCCAGATGTCCGAGAGAGCTGTAGAGCTTTTAAACCTGCCAGAGGGACAGCCATGCTTCCTGCTAGATGTGGGGTGCGGCTCTGGTCTCAGTGGAGACTTCCTGTCAGAGGAGGGACACTACTGGGTTGGAGTTGACATCAGCACCGCAATGCTGGATGTTGCACTGGACAGAGAAGTAGAGGGAGACCTTTTAGTGGGGGACATGGGCCAGGGGATGCCTTTCCGACCCGGCACCTTCGATGGCTGCATCAGTATTTCTGCTCTGCAGTGGCTCTGTAATGCCGACAAGAGGACACATAGTCCTCCTAAGAGACTCTACACCTTCTTTAGTACTCTCTACTCTTCTCTGTCAAGAGGTGCACGTGCGGTTTTCCAGCTTTATCCAGAGAACTCAGAACAGCTTGAGCTGATTACGACGCAGGCCATGAGGGCAGGTTTCGGTGGAGGCATGGTGGTGGATTACCCCAACAGCAGCAAGGCTAAAAAGTTCTTCCTGTGTCTGTTTGCTGGAGTAACAGGAGCCCTTCCCAAAGGATTGGGAACAGAAACGTCAGACAGAGCTGTTTCAAACCAGGTCCAGTATTCAGGACAGAGATGTCGGTTCAAAAACATGAAGGGGAAATCGGCGAAGAAGGGGCGAGATTGGATCtttgagaagaaagagaggaggagaaggcagGGACGGGAGGTTCGAGCCGACACAAAATACACTGGACGTCAGAGAAGACCTAATTTCTAACTGACTCATGCAGCTGAGCCTTCATTAGCTCTTGTCAGTACCACCCCACACACATTCAGCCCTCGAACTGAAGAGGGTTTGGACTTCTAACTCTTAAATTCAAGTGGATGAGATGAAAGAGTAAAATGCTATAATGGCCAATCATTTCCTTTTGGttgagtgtttttgtttttcttctgacaAATGGTAGTAAGATTGCACTTTCCATGTTCATGTTGGCTGGAAGATACGAAgtacacatagacagacatttGTACttttcatgaataaatgatacATGCAGATTTATGTGTTGTCCCCGGACAAACTTATTGTTCATGGCGTTTCAGAAGGTTAAAGAAACGGGAGTCATAATGGGAAAATGTAACTAAATGAACTTTAAAATGgaataaaatgacaaattgcAGCTGCAA

Function

NR:

description
probable 18S rRNA (guanine-N(7))-methyltransferase

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K19306 BUD23; 18S rRNA (guanine1575-N7)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039786899.1 True 1411 mRNA 0.47 12 33033911 33040994

Neighbor

gene id symbol gene type direction distance location
LOC120548751 sh2b2 coding upstream 3592 33001604 ~ 33030319 (+)
cux1b cux1 coding upstream 36324 32933523 ~ 32997587 (+)
wdr53 wdr53 coding upstream 139550 32891050 ~ 32894361 (+)
gfm1 gfm1,LOC102793859 coding upstream 149361 32869985 ~ 32884550 (+)
c2h19orf54 clg14h19orf54,LOC102791611,LOC102297608,LOC102205645,LOC101483057,LOC104956263 coding upstream 185851 32842421 ~ 32848060 (+)
rabgef1l LOC103357827 coding downstream 111967 33152961 ~ 33160862 (+)
LOC120549888 NA coding downstream 120850 33161844 ~ 33164509 (+)
ppm1lb ppm1l,LOC104924737,LOC103369726 coding downstream 157220 33198214 ~ 33244387 (+)
LOC120574977 arl14 coding downstream 204590 33245584 ~ 33248861 (+)
kpna4 kpna4 coding downstream 208883 33249877 ~ 33262636 (+)
G21257 NA non-coding upstream 148943 32880399 ~ 32884968 (+)
G21253 NA non-coding upstream 182044 32849324 ~ 32851867 (+)
G21228 NA non-coding upstream 212665 32754573 ~ 32821246 (+)
G21400 NA non-coding downstream 177028 33218022 ~ 33231483 (+)
G21417 NA non-coding downstream 239413 33280407 ~ 33280664 (+)
G21418 NA non-coding downstream 239962 33280956 ~ 33281661 (+)
G21419 smc4 non-coding downstream 241127 33282121 ~ 33282936 (+)
G21427 NA non-coding downstream 291282 33332276 ~ 33344101 (+)
LOC120573710 col26a1,LOC102078035 other upstream 114888 32898357 ~ 32919023 (+)
G21267 NA other upstream 136348 32896624 ~ 32897563 (+)
G20956 NA other upstream 1311425 31719505 ~ 31722486 (+)
G20954 strn4 other upstream 1320032 31706623 ~ 31713879 (+)
si:dkey-202l22.3 LOC104943829,LOC104918037,LOC103136259,LOC106934030,LOC106953837 other upstream 1402271 31620993 ~ 31631640 (+)
stx1a stx1a,LOC102292079,LOC102198818,LOC102795677,LOC108240947 other downstream 405 33041399 ~ 33129974 (+)
trim59 trim59,LOC102781275 other downstream 221752 33262746 ~ 33274010 (+)
LOC120547286 mbnl1 other downstream 802370 33843364 ~ 33919945 (+)
igsf9ba igsf9b other downstream 2415768 35456762 ~ 35535087 (+)
pih1d2 pih1d2 other downstream 2903443 35944437 ~ 35948800 (+)

Expression


Co-expression Network