nlrx1 (nlrx1)


Basic Information

Item Value
gene id nlrx1
gene name nlrx1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 43064629 ~ 43144178 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039787188.1
TcctacaagaagaagaagaagaagccacTGTAACGAACACCGCTTCGAGCGCTGCACCAGCTGTCTTTATACACCCACCTTCACAGTATTCGTTTAGTCGCTGCGAAACGTTTTTGGATATCGTGGGAAATTAACGTCAATGTCCTGATACAGAGACCGATGGGAGACAAGGGTGCAGGACGATGAGACATTGAACGGTCCTTGACATCAAGACGCAAAGGAACAGAAGGATGAGCTCACTGCACAGACAGCTGAGTCAGCTCTGCGGGtcgtggaggtggaggtggagtaGGGTGGCGGTTTCTCTGTACCCAGCCACTGGCTTCCACTGCAGGACCTTCTGCTCCACTACCTCAGGACCAGCTGAATCCATAGAGATTCACAAGAGGAAGCTCTTCCTGTGGTTCAGCCACCTTCCTCGGGAGGAAAAACAGTTTGGCGGGTGCTTCAGCCCCGAGACCATGCATGTGGATCCACTGATACTGGAAAGAAAAACTGAAGAGAAGGCAGGACTACTCAGTTCCGTGCTCCAAACCCAGCCCCCCTCCTGCCCCTCTGTGACTGTGCAACAGCTGTTTGATCCCACTGATGCCTGGAGGGAAGGTCGGGGGCTCAATGTGCTGCTGTACGGGGCTGTGGGAACAGGCAAAAGTACAGTGGTCCGAAAGCTGGTCCTGGATTGGTGCACAGGGACCACCCTGTCCCACTTCAAGCTGCTGGTTCCTTTCTCTTGTGAGGACCTTGGCCAACTGTCAAAAGTGGCTTCCTTAAGGGACCTGGTGAGCAGGAAGTACCTCCACCTGAGAAAACACCCCCTGCTGAGTGGGGAGGGAAACCAGGCCAAGGATGTGCTCTTTGTCTTTAATGGGATGGAGAAGATGAAACTGGACTTCCGAATTGGAGCCACAGAGCTTTGCAGTGATCCTAATGAGGCGCTTCCTGCAGATGTGGTGGTGGTGAACTTGCTGAGGAAATATCTCCTGCCCGAGgccAGCATCTTGGTTACCACCAGACTGTCTGCCCTGGACCGTATCCCACAGAAGTATGTGAGTCGCTATGCACAGATTTGTGGCTTCACTGACCCGGAGCGCCAGCGGGCCTACTTCACCAGCCGCCTGCTGCAGCAGAGTGGAAAGACTGCATGTAACCATGAGGCCCAGTCCGTCATAGAGCTGCTTTACCTCAACCTTCAGAGACAAAGCCAGCTGGCTACAGCCTGCTTTCTCCCGTCCTACTGCTGGCTCACATGTGCTACCTTACACTTCCTCCATTTCACTGATTCCAAGGAACCCATCCGCACACTGACTGGCATATACACCAGCTTCCTTAGGCTCAACTTTGGAGGTGAGATGCTGGGCACAGGGACAGGGACAAATGTGCCTATACAGGAGCACCAGAGTTCTCTGATGTTGTATGTAGTTCGTACAGTTGGGAAACTTGCTTTTGACGGTGTGACATACAAACGCATGTCATTCTCAGAAAAGGAACTGGAGCAGTGGATAGGAGGGAAGACCAAGACGGATGAGGAGCTACATCAGCTGGCCATGTTCCGGACTGATGTGCTAGACTTCTTTTTGGCTCCCAGTGTAGAAAGTGTTAAGCATTTACCAGAAGATCCCAGTGAGAGTGATCAGAGGCGGTATGTATTTGCGGTCCCAGCCATGCAGGAGTACCTAGCAGCTCTCTACGTGGTTCTCGGAGAGAACAAGTCGGCTCTGGAGAAGCTGACCAGTCAGGTGTCTGTGGTCATTGGTCAGACAAGTGAGGATGTCAATGCCCTGTTTAACATCCTTTCGAAGTTTATCCCCCTCCGAATATTTGCTGTATTCAACCTCCTTAAGCTTTTTCCGAAGCTCTTTGAGAAGATCAGCAGTCTGAACAAAGGCAGCATTGCTAAAACCATGGCAGCTGAGATGTTCCGCACAGAGGATAGCTACAATGAGGATGTCCTGGATCAGGTGGAGAAAAGCCTCCTGGGAGTCCATGGCCCCCAGCCACAGCAGTACAGTAAAGGCCAGCCTTTTGAGCTCTACCCTATCTTCATGGGTGGactgttgcattatgggaaccGTGTCCTTCTCCAGCAACTTGGGTGCAGCATTCAGAGCACCACTGTGGCCCAGATCACACATGTCCTTAGGAAGTACCTTGTCAGAGAGCTCAGCAAGCCACAGCCACCGGAGGAGCTGATGGATCTACTAGTCCTTCTGTATGAGTTTCAGAACCCCAGACTGACTGCAGAGGTTCTGGCCTCAATCAGAACCATCCGCCTCAACAACATTCGTATGACGCCACTCAAATGCTTTGTACTGAGTTCTGTGCTCTCATGTACCCCTGCAAGTTATCACCTTGAAGAGCTGGACCTGTCCTCCTGTCTCCTGACTCATGAAATGCTTCAGATGCTATGGCCGGccttcagacacacacaaaacctcaATCTGCAGTTTAACAGCCTGGGTCCTGAGTCCTGCTTCCTCCTGAGAGATCTGCTACTAGACCCCAAGAGCTCTATTAAATCTCTAAAACTGTGTGACAACCCTCTGCTGGAGTCTGGAGCCTGCATCCTGCTGGAGGTTTTGCCAGAGAGCCAGTCCCTAACACACCTGTCCCTGATGCACACTGGGTTGGGGGACCAGGGGGCCTTGAAGCTGGCTGAGAGGCTTCAGCAGCACACGGGGCTCCAGGAGCTCAACGTGGCCTACAACAACATCGGAGACAACGCTGCTCTGACTCTAGTGGACGCCTGCAGGGAACACCCCAGCATTCACACTGTGCAcTTGTATCTGAACCCTCTCAGTGATGTGGGGAAACAGGCCCTGTACGTTAGAGGTGTTCCCAAGAGCCAGAGCGGTCTGAGGGTCAAGGTCCTGGCTTCAGTCACTGAGGGCTCAGACATCTCTGAGAACTGGCACCCCATTCTCAATGTGATACGAGAGAATGCCTCGTCCTGGGACCGCCAGCGTGTCAAGCAGCAGCTTCAGGTTTTCCTCCGGGATCTGGAGTGGGGCCGTCGGCAGCAGCAGAGCTTCTGGAAAAGGCTGCACTTCCGCAGGGTGGAGAAGGGTGTCCAACAGACTCTACACATGCTGGAGAAGGACACTCTACCTCCATCCACATGAAACCGCAAATAACCAATAAACACCAAGAGTTGAAAGGGCAGTATATGTTTTCAGCAGCATATCAGGTTTAAATCTGTGAGAAACATCTGCAGCTGGTCTAAACTGGAGGTCCAGGAGATACATTTTCATTATTGTAACAGAGAAGACGTCATTCAACATTTACAAAGTAGCTTAAAAACATCCCTGACTTTGTTTTAGGACTTCCTCAACTCAGAGATTTCAAAACCTCTTCAGAGAGATAAAACATAGTACATACATAATGTAACCCTGATTCAGTCAGGACACTTGCATCAAGGTTTTAACCAGTTAttgcatatatatattagggctgtcaatcgattcaaatatttaattgcaattaatcgcatgattgtTAACTCGCGATTATTAGCAAATCATTCGCCCATTTtttatctgttcaaaatgtactttaa

Function

symbol description
nlrx1 Predicted to be involved in intracellular signal transduction and negative regulation of I-kappaB kinase/NF-kappaB signaling. Predicted to be active in mitochondrion. Orthologous to human NLRX1 (NLR family member X1).

NR:

description
PREDICTED: NLR family member X1 isoform X2

GO: NA

KEGG:

id description
K12653 NLRX1; NLR family member X1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039787188.1 True 3553 mRNA 0.51 12 43064629 43144178

Neighbor

gene id symbol gene type direction distance location
kcnj13 kcnj13 coding upstream 89858 42957586 ~ 42974771 (+)
LOC120551871 NA coding upstream 377898 42685949 ~ 42686731 (+)
LOC120553075 NA coding upstream 765773 42275724 ~ 42298856 (+)
LOC120553062 NA coding upstream 798275 42262028 ~ 42266354 (+)
pgr pgr coding upstream 1181858 41873584 ~ 41882771 (+)
LOC120574026 NA coding downstream 36862 43181040 ~ 43233116 (+)
LOC120554170 NA coding downstream 263007 43407185 ~ 43423931 (+)
LOC120551880 NA coding downstream 334428 43478606 ~ 43480326 (+)
LOC120545596 vezf1,LOC103355252 coding downstream 465905 43610083 ~ 43663629 (+)
LOC120572363 NA coding downstream 579963 43724141 ~ 43735537 (+)
G23499 efhd1,LOC102197633,LOC104944455,LOC101463816,LOC100691052,LOC102780618,LOC103377704 non-coding upstream 51592 42992787 ~ 43013037 (+)
G23491 NA non-coding upstream 81337 42982764 ~ 42983292 (+)
G23487 NA non-coding upstream 83367 42980649 ~ 42981262 (+)
G23485 NA non-coding upstream 84479 42979538 ~ 42980150 (+)
G23472 NA non-coding upstream 129838 42934310 ~ 42934791 (+)
G23519 NA non-coding downstream 72054 43216232 ~ 43218601 (+)
G23534 NA non-coding downstream 212564 43356742 ~ 43358098 (+)
LOC120573050 NA non-coding downstream 214802 43358980 ~ 43363711 (+)
G23597 NA non-coding downstream 240281 43384459 ~ 43384721 (+)
LOC120554178 NA non-coding downstream 266060 43410238 ~ 43412523 (+)
G23411 NA other upstream 361584 42702541 ~ 42703045 (+)
trpc6b trpc6,LOC103377966 other upstream 1197265 41853614 ~ 41867364 (+)
fndc3a fndc3a other upstream 1842141 41152447 ~ 41222488 (+)
mtus2b mtus2 other upstream 2243983 40776673 ~ 40820646 (+)
LOC120544392 grik1,LOC100705871,LOC102307112,LOC103360904 other upstream 2817605 40203295 ~ 40247024 (+)
G23605 NA other downstream 261715 43405893 ~ 43410410 (+)
G23673 LOC107727923,LOC107666201 other downstream 408029 43552207 ~ 43571014 (+)
LOC120574587 msi2,LOC103377698 other downstream 1086194 44230372 ~ 44702449 (+)
G23999 NA other downstream 2199280 45343458 ~ 45349337 (+)
LOC120546960 dhrs13 other downstream 2971209 46115387 ~ 46237439 (+)

Expression


Co-expression Network