LOC120573050


Basic Information

Item Value
gene id LOC120573050
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 43358980 ~ 43363711 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005641627.1
cgTCACTCGGGCATGCAGCAGAGGTACAAGGCAGACGGCCGCCACCGCCACGGAGTCAGGTCTTTGCTAGCTACAGGTCAAGGAGAAACATCCTAAAGTGAGCGCCATCACTGCACAGTGATCAACAACATACGTGGCTGAAGATGATTTTCACACTTACATCTGCCTGCAGAAGGAGTCCCTCAGGTGTTTCTTTGAAGTGTGCCATgTGTTGGCAACAGCAGCTGACGTTGAACAAACACTAAAACTTCCTGATTCTTCAAGACTAATTGTCTTAGgtGAATTGCTCACAGCAAGCTTTTGGATGCTGAGCATCGAGGGTCAGGTGGTTTTGCCTCCACATCCCAACTTCTTGGCTGGAGTGGCAGCTTTGTTTTCTAGCTACTACAACTTCAATCTGGTGTACCAGGAGCAAGCATCTTGCAcactggaattcattcaaagATGCTTTTTGGACTGAACCCCTCCAGTGGGACCAAGACAACAAAGATGGTGAGCCAAAAAAGTGGGAAGGTacaggagaagaagagaaaccCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005641627.1 True 539 lncRNA 0.48 5 43358980 43363711

Neighbor

gene id symbol gene type direction distance location
LOC120574026 NA coding upstream 125864 43181040 ~ 43233116 (+)
nlrx1 nlrx1 coding upstream 214802 43064629 ~ 43144178 (+)
kcnj13 kcnj13 coding upstream 384209 42957586 ~ 42974771 (+)
LOC120551871 NA coding upstream 672249 42685949 ~ 42686731 (+)
LOC120553075 NA coding upstream 1060124 42275724 ~ 42298856 (+)
LOC120554170 NA coding downstream 43474 43407185 ~ 43423931 (+)
LOC120551880 NA coding downstream 114895 43478606 ~ 43480326 (+)
LOC120545596 vezf1,LOC103355252 coding downstream 246372 43610083 ~ 43663629 (+)
LOC120572363 NA coding downstream 360430 43724141 ~ 43735537 (+)
nf1a nf1 coding downstream 462858 43826569 ~ 44220557 (+)
G23534 NA non-coding upstream 882 43356742 ~ 43358098 (+)
G23503 NA non-coding upstream 7914 43044348 ~ 43351066 (+)
G23519 NA non-coding upstream 140379 43216232 ~ 43218601 (+)
G23511 NA non-coding upstream 208073 43129540 ~ 43150907 (+)
G23499 efhd1,LOC102197633,LOC104944455,LOC101463816,LOC100691052,LOC102780618,LOC103377704 non-coding upstream 345943 42992787 ~ 43013037 (+)
G23597 NA non-coding downstream 20748 43384459 ~ 43384721 (+)
LOC120554178 NA non-coding downstream 46527 43410238 ~ 43412523 (+)
G23621 NA non-coding downstream 65044 43428755 ~ 43429005 (+)
G23624 NA non-coding downstream 70135 43433846 ~ 43469344 (+)
LOC120572503 NA non-coding downstream 117331 43481042 ~ 43485352 (+)
G23411 NA other upstream 655935 42702541 ~ 42703045 (+)
trpc6b trpc6,LOC103377966 other upstream 1491616 41853614 ~ 41867364 (+)
fndc3a fndc3a other upstream 2136492 41152447 ~ 41222488 (+)
mtus2b mtus2 other upstream 2538334 40776673 ~ 40820646 (+)
LOC120544392 grik1,LOC100705871,LOC102307112,LOC103360904 other upstream 3111956 40203295 ~ 40247024 (+)
G23605 NA other downstream 42182 43405893 ~ 43410410 (+)
G23673 LOC107727923,LOC107666201 other downstream 188496 43552207 ~ 43571014 (+)
LOC120574587 msi2,LOC103377698 other downstream 866661 44230372 ~ 44702449 (+)
G23999 NA other downstream 1979747 45343458 ~ 45349337 (+)
LOC120546960 dhrs13 other downstream 2751676 46115387 ~ 46237439 (+)

Expression


Co-expression Network