LOC120573002


Basic Information

Item Value
gene id LOC120573002
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 32714627 ~ 32723816 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU200747
gctgaccaaatcgctcttCCTGCAACGTGAACAGGGGTAAACACGGGGGATATGAATGGGACTTATGTATCGATACTCGCggcttaaaaataaatactttcttgggggaaaaaatatcaatatatatcgcagaatcgataaaattgctcagccttaatatcagggcgctgcagggcgttacaggatgtagcgtggcccagcagagcatggatggacgtagcaggaagcagcatgacactgcagggcacggcagggagtgcagcaggaccacggcgacagctgcagccaagatcttggtgccaacgtgctccaaggaaatatgctgggtgattcccacaggaagtgacgtgaatgatgacgttttcactcgaaaaaatgtttttccgatgtccatgaacgcagcacaagtagcctacaacCCTTTAAGAACCATGCGCCCGGACACatttttttccgccgtcaaactagcaaaagtggatttggacacgccagCTGTCggcattttaaccatgttttagctaacggtaggctaacgttacctgctgctaagtgttaactagcgtcccgtctggggatgtttcagttccctctaacgtccgttttcggagcatcagagagaagcgcaggcatttaagtggcacctaaatggCACCGATATCCGCGTATTCGGATAACGGTCGTTAAAGCacccggtgccgtattagcaccgccCGGGTCTCTTACACTTACTTTCGGAGGCAGAGAGCTGCAGGAGGAGCAGGAAACACAGGACAGCGCAAAACATGTTGAAACCTGAAAACAGCTGTTGCGGTTTCCAAGAAGGAGGAGGCGGGTATGGCCGCAGCCTGGAGCGTCCCATGGTCAAGCCGTCTCGTCTCATGCCGAGGCATGTCCAACGGTTCAGAGGGTCAAAAATACGAAATCGAATTATTTTCCAGATGGAGATACGGGACTGCAACGGTTACAAGAAGCAGAACACCTGCAACACCTGCTGCCAGTCCACGGTATCGGCCGACAGTAGAGGAGTTTCTATTCTCAGAACCTGAAGATAATAAAACATATGAGTCAGTAGATGTGTGGATAGTGGAGCAGctttcatcctctctgatgttagaaactgcagctacaacctgatactcagaaacactcactgagagagactcaCTCACCTGCTGGCTCTGGAACCTGCAGACggatgattctgattggctccGAGTCAATGATGGCTCTCTTTCTACGTCTTGAACCAGCTGGTGCAACTCGACACTCGTATGTTCCGTTGTCGATGCTGCTCACATTCTTTAGATTTAAAGACACGTCTCCGTCCTTCACatctctgtccaccagctccACCCTGTCCTTAAAGTCTGGATGCTGGTAGGTTGGATCCAGGTGTCCATCTCTGTATAACAGGACGTATTCTGGCTCCTCCAGGTCAGGTCTGGTCCACTCTGCAGCTCTGATGGAGGGATGAGCAGCCTGACATGGCAGAATGACATCATCTCCAGGATGCACTGTTACCTCAATCAGATCCCACCAGGTAGAGGTCTCTCTCTCAGAGGTCAGACACTGGAGTACAGGAGCACCTCAAGGCTGTGGGAGTTCACCTATCCTcttcacacttcacaccagTGAAAGCAGAAGTCAACAGCCAAATAATGATCTAATCAACTTCTCAGATGACACGATCATACTAAGCCTGCTGCAAGGTTCAGTTCAGTGTACCATGATGAAATGATGAAAGGTCTGGTGTGACCATCACCATCTTAGCCTAAACACCACCAAAACCAAAGAAATCCTTTTTTGACCCCAGAAAGGTGAGAGCCCACGCCCAAAGAAAGAATCCATTCAGTCAGAGTAGTAacagactttaaaaaataaaaattaattggAAATAAGTTTGTGTTGCTGTGTACTTAACTTATTTAGGTCATTGATATAAATGGGTTGGACAAAATAATGGAAACACCTGTCAGTGTAACACATTACAGTTCAACATCAGCACACACTACTGCACATCCTCCACAATGACtcaattaacacacacactggtgtctgtgtgtgtgtctctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacatcagtttgtgtgtgtgtgtgtctgtctttgtgtgtgtgtctgtgtgtctgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtctgtgtgtctgagtgagACAACGCACCcttcgttaaaatagggccctaagtgttttgttgttgtaatactCATTTTGGCCAAAACAGTGATTAACATATAAGCATAAAACATACAGAgtgaataaaaaaggaaattcaACAATGATTCAACAACAGATTTAAAGACTTCAGAAACTCATCATGTAATCAACTCTCATGTTTTGAAAGCTTTACTAAAAAGTCCTTTCCAGTAATAATCCTGTAGGACTGCTTTTTTTGCATTATTAAACATGCTAAATGTTTGAAA
>XR_005641577.1
gaaacactcactgagagagactcaCTCACCTGCTGGCTCTGGAACCTGCAGACggatgattctgattggctccGAGTCAATGATGGCTCTCTTTCTACGTCTTGAACCAGCTGGTGCAACTCGACACTCGTCAGGTCTGGTCCACTCTGCAGCTCTGATGGAGGGATGAGCAGCCTGACATGGCAGAATGACATCATCTCCAGGATGCACTGTTACCTCAATCAGATCCCACCAGGTAGAGGTCTCTCTCTCAGAGGTCAGACACTGGAGTACAGGAGCACCTCAAGGCTGTGGGAGTTCACCTATCCTcttcacacttcacaccagTGAAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU200747 True 2531 lncRNA 0.46 3 32714627 32723816
XR_005641577.1 False 334 lncRNA 0.53 3 32715519 32716362

Neighbor

gene id symbol gene type direction distance location
LOC120572810 NA coding downstream 51817 32652305 ~ 32662810 (-)
LOC120572800 NA coding downstream 228274 32476726 ~ 32486353 (-)
LOC120572804 NA coding downstream 266297 32440648 ~ 32448330 (-)
LOC120572803 NA coding downstream 295048 32381753 ~ 32419579 (-)
LOC120572776 NA coding downstream 1163069 31506583 ~ 31551558 (-)
LOC120572789 NA coding upstream 261706 32985522 ~ 32995763 (-)
LOC120572766 NA coding upstream 282764 33006580 ~ 33034300 (-)
LOC120572924 NA coding upstream 325543 33049359 ~ 33055500 (-)
LOC120572785 NA coding upstream 339380 33063196 ~ 33073135 (-)
LOC120572772 LOC103367226,LOC104955725 coding upstream 360522 33084338 ~ 33090657 (-)
LOC120573043 NA non-coding downstream 16191 32696110 ~ 32698436 (-)
G148485 NA non-coding downstream 32560 32681068 ~ 32682067 (-)
LOC120573056 NA non-coding downstream 35341 32678905 ~ 32679286 (-)
LOC120572954 NA non-coding downstream 84152 32624171 ~ 32630475 (-)
G148463 NA non-coding downstream 90523 32623065 ~ 32624104 (-)
G148471 NA non-coding upstream 2017 32725833 ~ 32833283 (-)
G148505 NA non-coding upstream 47506 32771322 ~ 32773714 (-)
G148506 NA non-coding upstream 50036 32773852 ~ 32774829 (-)
LOC120572965 NA non-coding upstream 79776 32803592 ~ 32809157 (-)
G148520 NA non-coding upstream 103908 32827724 ~ 32831071 (-)
G148453 NA other downstream 14222 32652556 ~ 32700405 (-)
LOC120572607 NA other downstream 339078 32132336 ~ 32375549 (-)
G148246 NA other downstream 976945 31428928 ~ 31737682 (-)
LOC120572802 NA other downstream 1041003 31277977 ~ 31673624 (-)
LOC120572919 NA other downstream 1658242 31046646 ~ 31056385 (-)
G148472 NA other upstream 7264 32731080 ~ 32755361 (-)
G148509 NA other upstream 107860 32831676 ~ 32962233 (-)
G148536 NA other upstream 221529 32945345 ~ 32945806 (-)
LOC120572612 NA other upstream 386383 33110199 ~ 33132675 (-)
corin nfxl1,corin,LOC102297304 other upstream 497919 33221735 ~ 33341537 (-)

Expression


Co-expression Network