LOC120574263


Basic Information

Item Value
gene id LOC120574263
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 3953544 ~ 3955141 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU205247
actgttgttcccatcagtcacttagacacaaagacataggatgaaaaaaggttgaaaaaaaacgttagttaccctttaatgtgTGAAAATCCCTTGAAATGACTTCTTCCTGTGGTTTTTCTTCGGAGTTTGTTCTGTGGATGGATGAAGGCTTTTGGCTATGTCATAAAACAGCAGGTGTGGGATTGTTCAGACTCAAAAGGAAACACACCTATTAACCACCTCAGAAGCTGGCAGAGCAGTGAAAGAGGAATTTTTGTGTTTCCACCTTGCTGAGCGAGAATGTGAATTTCTGTCTCCTTCACTGAAGTCCAATTTgaattatttcaaaaaataaaataaaatcaaacattAACAGGGCCAGGTTCAAATACAAAGCTCAGTTTTTCTCATTTGGGATGAAAGAACGCATTCACACTTTGTGCACACGCAGTTATTCTTTTTCTCCGCAGACACACAGGGATGTAATgagcccttagGGTCATCATGCTTTGTCACGTTAACATGAAGTGTAATAAAGTAGCCACCGCAGCAGCTCATGCTCCTGTATATTTAGTTCACAGTCATAATCACATTTGTCACTGGGGATTATTGAGGAATGTAAAAGGGAGAGTCCAGAAAGTTGTTTCACTGTAACTGTCTTCACGTTCTCATGTCGTGTGGTTTAACATCACTGTTTAACAAACCAAAATGAAACGCTAGTAAATGAAGGAGGTTTCTCAGACATTATTTGGGAAATGTGGCTAGaatatattttgttattaacTTTTTTAAAAGTCTACATTTTTGTACCTGATGTGTAATTATGTAATTTAAGGACCAGATTCAAACTTGTATGTTTCAGGTTACTGTATACGGTCAGATTAATTAACAGACATACTGTAAGCAGGGTTGAATTGGACACAAGACACAGACTTGTACTCGTACTGGACTGTCTATAATATCTGCTCAATGTACTGCAAAGTTTATGGATTGCAAATTAAACACAGCTTTT
>XR_005641849.1
CGatgtcaaagactgttgttcccatcagtcacttagacacaaagacataggatgaaaaaaggttgaaaaaaaacgttagttaccctttaatgtgTGAAAATCCCTTGAAATGACTTCTTCCTGTGGTTTTTCTTCGGAGTTTGTTCTGTGGATGGATGAAGGCTTTTGGCTATGTCATAAAACAGCAGGTGTGGGATTGTTCAGACTCAAAAGGAAACACACCTATTAACCACCTCAGAAGCTGGCAGAGCAGTGAAAGAGGAATTTTTGTGTTTCCACCTTGCTGAGCGAGAATGTGAATTTCTGTCTCCTTCACTGAAGTCCAATTTgaattatttcaaaaaataaaataaaatcaaacattAACAGGGCCAGGTTCAAATACAAAGCTCAGTTTTTCTCATTTGGGATGAAAGAACGCATTCACACTTTGTGCACACGCAGTTATTCTTTTTCTCCGCAGACACACAGGGATGTAATgagcccttagGGTCATCATGCTTTGTCACGTTAACATGAAGTGTAATAAAGTAGCCACCGCAGCAGCTCATGCTCCTGTATATTTAGTTCACAGTCATAATCACATTTGTCACTGGGGATTATTGAGGAATGTAAAAGGGAGAGTCCAGAAAGTTGTTTCACTGTAACTGTCTTCACGTTCTCATGTCGTGTGGTTTAACATCACTGTTTAACAAACCAAAATGAAACGCTAGTAAATGAAGGAGGTTTCTCAGACATTATTTGGGAAATGTGGCTAGaatatattttgttattaacTTTTTTAAAAGTCTACATTTTTGTACCTGATGTGTAATTATGTAATTTAAGGACCAGATTCAAACTTGTATGTTTCAGGTTACTGTATACGGTCAGATTAATTAACAGACATACTGTAAGCAGGGTTGAATTGGACACAAGACACAGACTTGTACTCGTACTGGACTGTCTATAATATCTGCTCAATGTACTGCAAAGTTTATGGATTGCAAATTAAACACAGCTTTTCTCACAAATGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU205247 False 994 lncRNA 0.37 2 3953555 3955129
XR_005641849.1 True 1017 lncRNA 0.37 2 3953544 3955141

Neighbor

gene id symbol gene type direction distance location
usp43b usp43,LOC103359995,LOC100690273,LOC102787273,LOC102216249 coding upstream 1004 3815121 ~ 3952540 (+)
ntn1b LOC103359994,LOC102307962,LOC102192413 coding upstream 186483 3716564 ~ 3767061 (+)
hmox1a hmox1 coding upstream 378821 3566313 ~ 3574723 (+)
foxd7 LOC103364958,LOC101472204,LOC102208133,LOC100712378,LOC102300378 coding upstream 482529 3469465 ~ 3471015 (+)
spc24 NA coding upstream 557851 3385439 ~ 3395693 (+)
grb2b grb2,LOC106523871,LOC105013161 coding downstream 19418 3974559 ~ 4017811 (+)
LOC120574218 LOC101468431,LOC102214893,LOC102305576,LOC103359999 coding downstream 81650 4036791 ~ 4074967 (+)
kpna2 LOC104929438,LOC103360000,LOC102305279,LOC101468128,LOC102788352,LOC102214620 coding downstream 120713 4075854 ~ 4081644 (+)
smurf2 LOC102788644,LOC100691078,LOC101469682,LOC103360001 coding downstream 128188 4083329 ~ 4158337 (+)
ddx5 LOC103360002,LOC100712452,LOC102214151 coding downstream 204460 4159601 ~ 4165471 (+)
G151480 NA non-coding upstream 112 3952890 ~ 3953432 (+)
G151498 NA non-coding upstream 3869 3948862 ~ 3949675 (+)
LOC120573845 NA non-coding upstream 283290 3667892 ~ 3670254 (+)
G151465 tom1 non-coding upstream 325995 3625664 ~ 3627549 (+)
G151430 NA non-coding upstream 415629 3534920 ~ 3537915 (+)
G151650 NA non-coding downstream 213049 4168190 ~ 4168505 (+)
G151662 NA non-coding downstream 257859 4213000 ~ 4214435 (+)
G151665 NA non-coding downstream 259906 4215047 ~ 4215303 (+)
G151666 NA non-coding downstream 260252 4215393 ~ 4215658 (+)
G151673 LOC107376256 non-coding downstream 275379 4230520 ~ 4235687 (+)
G151471 NA other upstream 290262 3658997 ~ 3663282 (+)
ldlra ldlr other upstream 596349 3331004 ~ 3357195 (+)
LOC120573829 NA other upstream 675940 3243610 ~ 3277604 (+)
G151315 NA other upstream 805567 3146504 ~ 3147977 (+)
junbb LOC103364966,LOC107087652,LOC104932219,LOC100707881,LOC105929935 other upstream 848952 3083898 ~ 3104592 (+)
G151695 wbp11,LOC102783903 other downstream 363032 4318173 ~ 4319498 (+)
LOC120574173 NA other downstream 382940 4338081 ~ 4346405 (+)
pde6hb LOC104937730 other downstream 444889 4400030 ~ 4469278 (+)
fmc1 fmc1,LOC102794917 other downstream 807832 4762973 ~ 4765557 (+)
fam234b fam234b,LOC104962864 other downstream 850933 4806074 ~ 4822114 (+)

Expression


Co-expression Network