ntn1b (LOC103359994,LOC102307962,LOC102192413)


Basic Information

Item Value
gene id ntn1b
gene name LOC103359994,LOC102307962,LOC102192413
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 3716564 ~ 3767061 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039826094.1
gagagagagagagaggtgggcaGAGGTGTGACTGAGAGGACaggcagaggcagagggagactCCGAGCCAGCTGGGCTTTTGCCatatcttatttttatttaggaatctcaaagagagagagagagagagagagagagagagagagagagagaaaaaggggagAAAGGCTGAAGTACTATAGCAGTAGTTTTTCGTGCGTAAAGGGGATAGGTTGTTCTCCAAATTCTTAGGAGTTGTGCTTCACTTTCAGACTGAGCAGTTTATTTGCAGGCAGTGTCCTGGGTTTCTTTGCCTCCGCTAGAGTCCCTGCGGTGCACGGATTACAATGCAAAGGATTGTGGAGGTTTGGGTCACCTTGGTGACAGTTTGCGCGCTGACCGAGGGGGTCTTTGGAGGATACGGGCTGAGCATGTTTGCTGCGCAGTCTTCCCCTCCGGACCCGTGCTACGACGAGAACGGGAACCCTCGGCGGTGCATCCCCGACTTCGTCAACTCCGCTTTCGGAAAGGACGTGCGCGTATCCAGCACCTGCGGCAGCCCCGCCGCCAGGTACTGCGTGGTGGCCGAGAAGGGCGAGGAGCGGACGCGGGACTGTCACACGTGCGACGCCGCGGATCCCAAGAAGTCCCGTCCGCCCGCGTATTTAACAGACCTCAACAACCCGCACAACCTCACCTGCTGGCAGTCCGAAAACTACGCGCAGTATCCGCAGAACGTCACGCTCACCTTGTCGCTCGGGAAAAAGTTCGAGGTCACCTACGTGAGCCTGCAGTTCTGCTCACCCAGACCCGAATCCATGGCGATCTACAAGTCCATGGACTACGGCAAGTCGTGGGTGCCGTTCCAGTATTATTCCACTCAGTGCAAGAAAATGTACAGCAGGCAGAACAAGGCGGCGATTACTAAGCAGAACGAACAAGAGGCCATCTGCACGGACTCGCACACGGACATGCACCCTCTGACGGGCGGACTCATCGCCTTCAGCACGCTGGACGGCCGTCCGTCGGCGCACGACTTCGACAACTCCCCGGTGCTGCAGGACTGGGTGACGGCCACCGACATCAAGGTGATCTTCAGCCAGCTGCACACCTTCGGAGACGAGAACGAGGACGACTCGGAGCTGGCCCGCGACTCGTACTTTTACGCCGTGTCGGACCTGCAGGTCGGAGGACGGTGCAAGTGCAACGGGCACGCTTCAAAATGCGTCAAGGACAGGGACGGGAATCTGGTCTGCGAGTGCAAACACAATACGGCGGGACCGGAGTGCGACAGGTGCAAACCGTTCCACTACGACCGACCATGGCAGCGCGCCACGGCCCGGGAAGCCAACGAGTGTGTCGCATGCCACTGTAACCTGCATGCCCGCCGCTGTCGTTTCAACATGGAGCTGTACAAGCTGTCAGGCCGGAGAAGTGGCGGCGTCTGTCTCAACTGTCGACACAACACGGCGGGACGCCATTGCCATTACTGCAAGGAGGGTTACTACAGGGACATGACCAAGTCCATCTCTCACCGGAGGGCTTGCAAAGcgtGTGATTGCCATCCAGTTGGAGCAGCAGGGAAGACGTGTAACCAGACAACAGGCCAATGCCCCTGCAAGGATGGAGTGACGGGAATCACCTGTAACCGCTGTGCCAAGGGCTACCAGCAGAGCCGCTCTCCCATCGCCCCCTGCATCAAGATCCCAGTTGCATCTCCGACAGCAACGTACACCAGCTACGAGGAGCCGTCAGATTGTGAATCTCACTGCAAAGCGTCCAAGGGAAAGATGAAGATCACCATGAAGAAGTACTGTAAAAAAGACTACGCTGTCCAGGCGCACGTTCTGAAAGGAGACAAGGCCGGCGAGTGGTGGAAGTTCACCGTCAACATCATCTCCGTCTACAAACAAGGCGAGCACCGCATCCGCCGCGGCGACCAGCTGCTGTGGGTGCGCGCCAAGGACGTGGCCTGCAAGTGCCCCAAGATCAAGCCCGGGAGGAAGTACCTGCTCCTGGGCACAGACGACGATTCCCCCGGGCAGAGCGGCGTGGTGGCGGACAAGGGAAGCCTGCTCATCCCGTGGAAGGACCTGTGGGGCCGCCGGCTGAGGAAGTTCCAACAGCGTGACAAGAGGGGAAAGTGCTAAGA

Function

NR:

description
PREDICTED: netrin-1-like

GO:

id name namespace
GO:0016358 dendrite development biological_process
GO:0071678 olfactory bulb axon guidance biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K06843 NTN1; netrin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039826094.1 True 2131 mRNA 0.58 7 3716564 3767061

Neighbor

gene id symbol gene type direction distance location
hmox1a hmox1 coding upstream 141841 3566313 ~ 3574723 (+)
foxd7 LOC103364958,LOC101472204,LOC102208133,LOC100712378,LOC102300378 coding upstream 245549 3469465 ~ 3471015 (+)
spc24 NA coding upstream 320871 3385439 ~ 3395693 (+)
kri1 kri1,LOC105353547 coding upstream 331995 3368814 ~ 3384569 (+)
usp43b usp43,LOC103359995,LOC100690273,LOC102787273,LOC102216249 coding downstream 48060 3815121 ~ 3952540 (+)
grb2b grb2,LOC106523871,LOC105013161 coding downstream 207498 3974559 ~ 4017811 (+)
LOC120574218 LOC101468431,LOC102214893,LOC102305576,LOC103359999 coding downstream 269730 4036791 ~ 4074967 (+)
kpna2 LOC104929438,LOC103360000,LOC102305279,LOC101468128,LOC102788352,LOC102214620 coding downstream 308793 4075854 ~ 4081644 (+)
smurf2 LOC102788644,LOC100691078,LOC101469682,LOC103360001 coding downstream 316268 4083329 ~ 4158337 (+)
LOC120573845 NA non-coding upstream 46310 3667892 ~ 3670254 (+)
G151465 tom1 non-coding upstream 89015 3625664 ~ 3627549 (+)
G151430 NA non-coding upstream 178649 3534920 ~ 3537915 (+)
G151414 NA non-coding upstream 282184 3434095 ~ 3434380 (+)
G151411 NA non-coding upstream 285916 3430358 ~ 3430648 (+)
G151498 NA non-coding downstream 181801 3948862 ~ 3949675 (+)
G151480 NA non-coding downstream 185829 3952890 ~ 3953432 (+)
LOC120574263 NA non-coding downstream 186483 3953544 ~ 3955141 (+)
G151650 NA non-coding downstream 401129 4168190 ~ 4168505 (+)
G151662 NA non-coding downstream 445939 4213000 ~ 4214435 (+)
G151471 NA other upstream 53282 3658997 ~ 3663282 (+)
ldlra ldlr other upstream 359369 3331004 ~ 3357195 (+)
LOC120573829 NA other upstream 438960 3243610 ~ 3277604 (+)
G151315 NA other upstream 568587 3146504 ~ 3147977 (+)
junbb LOC103364966,LOC107087652,LOC104932219,LOC100707881,LOC105929935 other upstream 611972 3083898 ~ 3104592 (+)
G151695 wbp11,LOC102783903 other downstream 551112 4318173 ~ 4319498 (+)
LOC120574173 NA other downstream 571020 4338081 ~ 4346405 (+)
pde6hb LOC104937730 other downstream 632969 4400030 ~ 4469278 (+)
fmc1 fmc1,LOC102794917 other downstream 995912 4762973 ~ 4765557 (+)
fam234b fam234b,LOC104962864 other downstream 1039013 4806074 ~ 4822114 (+)

Expression


Co-expression Network