foxd7 (LOC103364958,LOC101472204,LOC102208133,LOC100712378,LOC102300378)


Basic Information

Item Value
gene id foxd7
gene name LOC103364958,LOC101472204,LOC102208133,LOC100712378,LOC102300378
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 3469465 ~ 3471015 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823870.1
AGATATTACAGATGATGCTGGACACCTCAGAGGACGCGCACACTTTTTTACGCTTTTACGCACAATCACTCAACGCTGCAGGCTGAACGTTCTTTTGCGCGTTTATGCACCAAATTAAAGGATATCAGCGCGCGTGGTCTTGAGAGTTTGCTTGTGGGGAAAGTAGGATTGGGCATTGTGTTTGGATGttcacttttttgtgtgtgaatggagACGAGTCgtgcgtaaaaaaaaaataaaaaaaaaaaactcgctTTGAAGAGAAGAAGCTGTCGCTCTCCCACCTGTTGGCAGGTGGTGTTGGCTTTACCCGCGGACATCTACTATGACATTGGGTTTGGACATCATGGAGGATATTGTTATCGACGTAGTAGGGGAAGGAGTCAAAGACAGCGGAGAGGAGCAGCTCTTACCTGCGGATGAGTCGCAGAGCGGCACCGAGacttccagcagcagcagcctgcagAGCAAAGAGCGGGACAGCTACAGCCCTGACCCGGAGTCTCCTTCCCTTTCTCCTGCTAAAAGCAAAGGTCCCGCGGCGGTGAAGCCTCCGTACTCTTACATCGCTCTGATAACGATGGCCATCCTGCAGAGTCCAAAGAAACGGCTCACCCTCAGCGAGATCTGTGACTTTATCAGCCAGCGCTTCATGTACTACCGGGAGAAATTCCCCGCCTGGCAGAACTCTATCAGACACAATCTGTCGCTCAATGACTGCTTTATAAAGATGCCCAGGGAGCCGGGGAACCCCGGGAAAGGCAACTACTGGACGCTGGATCCTAACTCCTCGGACATGTTTGAGAACGGGAGTTTTTTGCGGCGGAGGAAGCGCTTCAAGCGGCAGCATTTCCGCTTCGATCCGCTCAAGGAGCAGCACCTGGAGCCGAGCGGGCTGCGCGGCTTTGCGCACGGCTCCTACGGGTTCGGAGCGGCGGCTCTGCAGCTGCCGGGTCTGGAGATTTACCCTTACATCCATCACCACGCGCACTCGCACTCGCCGTGCGGCCCCGGCACCGTCCCACCTGTCAGCAGCATCCTGCCGGCTCTCTCCAGCTTCTTCTCCCGCAGCAGCGCGCTCACAGCCAAGGCTTTCCTCCAGCAGGCGCAGCCCGGAATCGAAGCCTTCTCCCCGGCCCAGTACGCCTCTCCTCTGACTTCTAACGCCGCTTACGCGTCCCCTGCGCTCTTCCACCCCGCTGCGTCTCCGCACTTTCTCACTTTACATCCGGAGTTTCAGAAACTACAGCGTGGCACCGTGGACCTGGCCAAAACACAGCGCTAACAatgaataacacacacacacacacacacatatcggACTTCCAACTCGTGTTTTCTCAGGTAACAGAGACATTTTACGCAGAATTTCTCCTCCGTTAAGTGGGATGAATCTGCTTTCGAAGAATGTTgtagatactgtatgtttaaaaaaaaaagaactctccctctttctcacttttatggcaaaaaaataaataaaaaaacttttagCAGACCCCCTTTTTTCTGAACATAAAATAgcctcttttcttttgtttaaatatttaa

Function

NR:

description
PREDICTED: forkhead box protein D2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823870.1 True 1551 mRNA 0.52 1 3469465 3471015

Neighbor

gene id symbol gene type direction distance location
spc24 NA coding upstream 73772 3385439 ~ 3395693 (+)
kri1 kri1,LOC105353547 coding upstream 84896 3368814 ~ 3384569 (+)
LOC120575510 NA coding upstream 86852 3382514 ~ 3382613 (+)
LOC120575509 NA coding upstream 88079 3381287 ~ 3381386 (+)
smarca4a smarca4 coding upstream 148079 3283608 ~ 3321386 (+)
hmox1a hmox1 coding downstream 95298 3566313 ~ 3574723 (+)
ntn1b LOC103359994,LOC102307962,LOC102192413 coding downstream 245549 3716564 ~ 3767061 (+)
usp43b usp43,LOC103359995,LOC100690273,LOC102787273,LOC102216249 coding downstream 344106 3815121 ~ 3952540 (+)
grb2b grb2,LOC106523871,LOC105013161 coding downstream 503544 3974559 ~ 4017811 (+)
LOC120574218 LOC101468431,LOC102214893,LOC102305576,LOC103359999 coding downstream 565776 4036791 ~ 4074967 (+)
G151414 NA non-coding upstream 35085 3434095 ~ 3434380 (+)
G151411 NA non-coding upstream 38817 3430358 ~ 3430648 (+)
G151336 NA non-coding upstream 54928 3414201 ~ 3414537 (+)
G151330 NA non-coding upstream 147065 3322195 ~ 3322400 (+)
G151318 NA non-coding upstream 207967 3214900 ~ 3261498 (+)
G151430 NA non-coding downstream 63905 3534920 ~ 3537915 (+)
G151465 tom1 non-coding downstream 154649 3625664 ~ 3627549 (+)
LOC120573845 NA non-coding downstream 196877 3667892 ~ 3670254 (+)
G151498 NA non-coding downstream 477847 3948862 ~ 3949675 (+)
G151480 NA non-coding downstream 481875 3952890 ~ 3953432 (+)
ldlra ldlr other upstream 112270 3331004 ~ 3357195 (+)
LOC120573829 NA other upstream 191861 3243610 ~ 3277604 (+)
G151315 NA other upstream 321488 3146504 ~ 3147977 (+)
junbb LOC103364966,LOC107087652,LOC104932219,LOC100707881,LOC105929935 other upstream 364873 3083898 ~ 3104592 (+)
G151240 NA other upstream 466101 3001899 ~ 3003364 (+)
G151471 NA other downstream 187982 3658997 ~ 3663282 (+)
G151695 wbp11,LOC102783903 other downstream 847158 4318173 ~ 4319498 (+)
LOC120574173 NA other downstream 867066 4338081 ~ 4346405 (+)
pde6hb LOC104937730 other downstream 929015 4400030 ~ 4469278 (+)
fmc1 fmc1,LOC102794917 other downstream 1291958 4762973 ~ 4765557 (+)

Expression


Co-expression Network