G158781 (snrnp70,LOC106583923)


Basic Information

Item Value
gene id G158781
gene name snrnp70,LOC106583923
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 28568221 ~ 28571366 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU215228
GTTTGATGGGGCCATAGACCTCAAATTCACGTCGAAGCTTGGACTCCGTAGTATCATAGTTCACTCGTGCAACAAACAATGTCTTGAAGGCATCCCCTTGTGCATTGGGGTCATTATGGGGGTCCCAAAGCTTGAGTTCAGTCTCCACCACTGTTTGCCTCCTTTCAATCTTCTCCCGCCTCTTTCTCTCCAGTCGCTCGTCACGGGTCTCTGCCCTTGTTGGTGGAGGGGCATCTCTAGGATCCTCGAAATGCCTGATGAACGGTGCGATACCACTGTAAGGTTGGTTGTGATGCTTCTCATGGGGCAACTTCTCTAGTTGAGGCAGGAAAGGAATAGGGTCCCGCGGTGCAAAGAGGGCCAGCAGATTCGGGGGTAAAAACTGCGTCATCTTTCACTTCTCTCCTCCGATGTCTGGACAAATGTCAGACCATGAACCAGAGGACGAACTGGACGATATATGCAGGTCTCCTGGACCAACTTACTCTTGCGAAAGTCTAAAAACAGTAACTTAGGACGGTCCGCTCAGAGCCCAGGCCGTGCGGCGACAAAGAGCTGAATGCGTGCGAGCATAGAGTGTGCGAGCTGTgttctgaaaaaa

Function

symbol description
snrnp70 Predicted to enable U1 snRNA binding activity and mRNA binding activity. Acts upstream of or within hematopoietic stem cell differentiation. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of U1 snRNP and U2-type prespliceosome. Is expressed in central nervous system; hematopoietic stem cell; and motor neurons. Human ortholog(s) of this gene implicated in disease of mental health and systemic lupus erythematosus. Orthologous to human SNRNP70 (small nuclear ribonucleoprotein U1 subunit 70).

NR:

description
PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215228 True 601 lncRNA 0.51 6 28568221 28571366

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-72e1.9 LOC103365753 coding upstream 250113 28213059 ~ 28318108 (+)
smim22 NA coding upstream 488824 28072589 ~ 28079397 (+)
LOC120574550 NA coding upstream 505426 28057650 ~ 28062795 (+)
rgs9a rgs9,LOC101473220,LOC102302237,LOC101080113 coding upstream 569259 27962022 ~ 27998962 (+)
slc16a6b LOC103363453 coding upstream 639561 27913740 ~ 27928660 (+)
ap2a1 LOC103373570,LOC104937940 coding downstream 114323 28685689 ~ 28727241 (+)
si:ch211-195b15.8 LOC108248462,LOC106526370,LOC105939812,LOC102226595 coding downstream 157801 28729167 ~ 28736585 (+)
prr12b prr12,LOC103373617 coding downstream 210499 28781865 ~ 28822148 (+)
tspan4b LOC103363438,LOC103393501 coding downstream 253418 28824784 ~ 28838251 (+)
LOC120575239 nosip coding downstream 287637 28859003 ~ 28867282 (+)
G158770 NA non-coding upstream 22729 28545228 ~ 28545492 (+)
G158756 LOC103381979 non-coding upstream 32358 28533562 ~ 28535863 (+)
G158763 gps1,LOC104953903 non-coding upstream 46038 28520443 ~ 28522183 (+)
G158757 NA non-coding upstream 74049 28483545 ~ 28494172 (+)
G158738 NA non-coding upstream 156782 28403546 ~ 28411439 (+)
G158806 NA non-coding downstream 77714 28649080 ~ 28655775 (+)
G158807 NA non-coding downstream 79320 28650686 ~ 28675291 (+)
G158811 NA non-coding downstream 196345 28767711 ~ 28767968 (+)
G158810 NA non-coding downstream 196936 28768302 ~ 28769615 (+)
G158818 NA non-coding downstream 203372 28774738 ~ 28774956 (+)
G158767 gps1 other upstream 35591 28526835 ~ 28532630 (+)
G158612 NA other upstream 515772 28048512 ~ 28052449 (+)
smg1 smg1 other upstream 906598 27601793 ~ 27661623 (+)
LOC120575279 NA other upstream 1167253 27399876 ~ 27400968 (+)
G158291 nsf,LOC101477540,LOC102297066,LOC100697603 other upstream 1940185 26575639 ~ 26628036 (+)
rras rras other downstream 168302 28739668 ~ 28767614 (+)
prrg2 NA other downstream 204707 28776073 ~ 28781350 (+)
mettl22 mettl22 other downstream 315552 28886918 ~ 28915929 (+)
LOC120574944 LOC104926834,LOC101476208,LOC100703712,LOC103358663,LOC108247076,LOC106525245 other downstream 388781 28960147 ~ 28985647 (+)
LOC120574189 LOC103364161 other downstream 629214 29200580 ~ 29207687 (+)

Expression


Co-expression Network