nudt1 (nudt1)


Basic Information

Item Value
gene id nudt1
gene name nudt1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 18264505 ~ 18268400 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824099.1
TCAGCAAATGATGGTACTCGTGGATCCAGTCTGCCGTTGATCAGACCAATCCCTGCTCCTACACATCAGCACGTCATGTGAGGACGTCTGTAGTGCTGCACGCGGGAGTTATTCAACGTTAAGTCTTGTTTTTATTCAACAACTTCTTTTTTTCGCCTGTCATTTTTTCGGGACAAAGCAATACATTGAGGAGACAGGTGAGATGTTGAGCTCCAAGCTGTTGACCCTGGTGCTGGTGGTCCAGCCGGGCAGAGTGCTGCTCGGCATGAAGAAGAGAGGATTTGGGGCTGGGAAGTGGAATGGTTTTGGGGGAAAAGTTCAACCTGGAGAAACTATTGAAGATGGTGCAAGGAGagaacTGCTAGAAGAAAGTGGCCTTACGGTGGATGCTCTCGAGAAGATCGGAAACATCAAATTTGAATTTGTTGGAGAAACACAGCTGCTTGACGTCCATGTTTTCAGAGCTGACACCTATAATGGAGAACCAACCGAGTCAGAAGAAATGCGGCCTCAGTGGTTCGAATGTGACCAAATTCCTTTCAGTCAAATGTGGGCTGATGACATCCTGTGGTTCCCCCTAATGCTCCAGAAGAAGAAATTTGTCGGATACTTTAAGTTTCAGGGTCACGATGTGATCCTCAGCCATAAACTGGAAGAGGTGGAGGAACTGTGAGACGACCTGCGTTTCTGAGGTCATTTATGactgtgacaaaaaaaagcGTCAGCCTTCCAAAGttcttcttcaaatgctatCCCAGGGTTCAGTGTTTGTTGTTCAGTTTACCTTGTGGGAGGAAACGAACATACTCTGAGGACTTCAACCCTGTTAACTGTACATGGAGAATGTTTACATGTAAAATTACATATTGAgaaataaaaatcaatcaataatcaGCAATA
>XM_039824100.1
TCAGCAAATGATGGTACTCGTGGATCCAGTCTGCCGTTGATCAGACCAATCCCTGCTCCTACACATCAGCACGTCATGTGAGGACGTCTGTAGTGCTGCACGCGGGAGTTATTCAACACAGGTGAGATGTTGAGCTCCAAGCTGTTGACCCTGGTGCTGGTGGTCCAGCCGGGCAGAGTGCTGCTCGGCATGAAGAAGAGAGGATTTGGGGCTGGGAAGTGGAATGGTTTTGGGGGAAAAGTTCAACCTGGAGAAACTATTGAAGATGGTGCAAGGAGagaacTGCTAGAAGAAAGTGGCCTTACGGTGGATGCTCTCGAGAAGATCGGAAACATCAAATTTGAATTTGTTGGAGAAACACAGCTGCTTGACGTCCATGTTTTCAGAGCTGACACCTATAATGGAGAACCAACCGAGTCAGAAGAAATGCGGCCTCAGTGGTTCGAATGTGACCAAATTCCTTTCAGTCAAATGTGGGCTGATGACATCCTGTGGTTCCCCCTAATGCTCCAGAAGAAGAAATTTGTCGGATACTTTAAGTTTCAGGGTCACGATGTGATCCTCAGCCATAAACTGGAAGAGGTGGAGGAACTGTGAGACGACCTGCGTTTCTGAGGTCATTTATGactgtgacaaaaaaaagcGTCAGCCTTCCAAAGttcttcttcaaatgctatCCCAGGGTTCAGTGTTTGTTGTTCAGTTTACCTTGTGGGAGGAAACGAACATACTCTGAGGACTTCAACCCTGTTAACTGTACATGGAGAATGTTTACATGTAAAATTACATATTGAgaaataaaaatcaatcaataatcaGCAATA
>XM_039824101.1
TCAGCAAATGATGGTACTCGTGGATCCAGTCTGCCGTTGATCAGACCAATCCCTGCTCCTACACATCAGCACGTCATGTGAGGACGTCTGTAGTGCTGCACGCGGGAGTTATTCAACGTGAGATGTTGAGCTCCAAGCTGTTGACCCTGGTGCTGGTGGTCCAGCCGGGCAGAGTGCTGCTCGGCATGAAGAAGAGAGGATTTGGGGCTGGGAAGTGGAATGGTTTTGGGGGAAAAGTTCAACCTGGAGAAACTATTGAAGATGGTGCAAGGAGagaacTGCTAGAAGAAAGTGGCCTTACGGTGGATGCTCTCGAGAAGATCGGAAACATCAAATTTGAATTTGTTGGAGAAACACAGCTGCTTGACGTCCATGTTTTCAGAGCTGACACCTATAATGGAGAACCAACCGAGTCAGAAGAAATGCGGCCTCAGTGGTTCGAATGTGACCAAATTCCTTTCAGTCAAATGTGGGCTGATGACATCCTGTGGTTCCCCCTAATGCTCCAGAAGAAGAAATTTGTCGGATACTTTAAGTTTCAGGGTCACGATGTGATCCTCAGCCATAAACTGGAAGAGGTGGAGGAACTGTGAGACGACCTGCGTTTCTGAGGTCATTTATGactgtgacaaaaaaaagcGTCAGCCTTCCAAAGttcttcttcaaatgctatCCCAGGGTTCAGTGTTTGTTGTTCAGTTTACCTTGTGGGAGGAAACGAACATACTCTGAGGACTTCAACCCTGTTAACTGTACATGGAGAATGTTTACATGTAAAATTACATATTGAgaaataaaaatcaatcaataatcaGCAATA

Function

symbol description
nudt1 Enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides. Predicted to act upstream of or within DNA repair. Orthologous to human NUDT1 (nudix hydrolase 1).

NR:

description
7,8-dihydro-8-oxoguanine triphosphatase

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0008413 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity molecular_function

KEGG:

id description
K17816 NUDT1, MTH1; 8-oxo-dGTP diphosphatase / 2-hydroxy-dATP diphosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824099.1 True 900 mRNA 0.45 4 18264505 18268400
XM_039824100.1 False 824 mRNA 0.46 4 18264505 18268400
XM_039824101.1 False 820 mRNA 0.46 4 18264505 18268400

Neighbor

gene id symbol gene type direction distance location
elfn1a elfn1,LOC102796786,LOC102194801 coding upstream 102656 18084822 ~ 18161849 (+)
mafk mafk coding upstream 266458 17986567 ~ 17998047 (+)
uncx uncx,LOC102794453 coding upstream 412971 17848269 ~ 17851534 (+)
ubfd1 ubfd1 coding upstream 548810 17711170 ~ 17715695 (+)
kdm8 kdm8 coding upstream 571779 17685326 ~ 17692726 (+)
trnac-gca_23 NA coding downstream 56929 18325329 ~ 18325400 (+)
trnac-gca_24 NA coding downstream 58574 18326974 ~ 18327045 (+)
trnac-gca_25 NA coding downstream 60093 18328493 ~ 18328564 (+)
pts pts coding downstream 115307 18383707 ~ 18386049 (+)
gpatch8 gpatch8,LOC102799714 coding downstream 119183 18387583 ~ 18417914 (+)
G156053 NA non-coding upstream 84423 18179768 ~ 18180082 (+)
G156016 psmg3 non-coding upstream 242460 18019999 ~ 18022045 (+)
G155987 NA non-coding upstream 316279 17944661 ~ 17948226 (+)
G155919 NA non-coding upstream 495861 17696316 ~ 17768644 (+)
G155917 NA non-coding upstream 567218 17690624 ~ 17697287 (+)
G156113 NA non-coding downstream 57930 18326330 ~ 18326696 (+)
G156114 NA non-coding downstream 64128 18332528 ~ 18332877 (+)
G156126 gosr2 non-coding downstream 151297 18419697 ~ 18420393 (+)
LOC120574045 NA non-coding downstream 153599 18421999 ~ 18423889 (+)
G156128 wnt9b non-coding downstream 162506 18430906 ~ 18434691 (+)
axin1 axin1,LOC104966034,LOC107564695 other upstream 473097 17750877 ~ 17791408 (+)
pla2g10 LOC104918718,LOC100698203,LOC102215607,LOC101486881,LOC102793376,LOC102313624,LOC103360505,LOC105922122 other upstream 523361 17736979 ~ 17741144 (+)
rmi2 rmi2,LOC102793083 other upstream 540276 17716739 ~ 17724229 (+)
hs3st4 hs3st4,LOC100711185 other upstream 760861 17414575 ~ 17503644 (+)
usp31 usp31,LOC103368689,LOC101484509,LOC102212874 other upstream 972239 17272659 ~ 17292266 (+)
ttyh3a ttyh3 other downstream 12390 18280790 ~ 18304091 (+)
LOC120575352 bax other downstream 84011 18352411 ~ 18379788 (+)
mlx mlx,LOC102777479 other downstream 336975 18605375 ~ 18616279 (+)
G156225 LOC104944052 other downstream 454888 18723288 ~ 18724737 (+)
LOC120574764 LOC103367899,LOC104923905,LOC104944057 other downstream 522507 18790907 ~ 18809550 (+)

Expression


Co-expression Network