znf598 (LOC101064755,LOC105416421,LOC103147408,LOC106595880,LOC104962932)


Basic Information

Item Value
gene id znf598
gene name LOC101064755,LOC105416421,LOC103147408,LOC106595880,LOC104962932
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 6738111 ~ 6748409 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825287.1
ACGTGGACTAGTAGTGATTGTGAAATGACCAAACGTGCGATAGCTCTAAGCAGCACCGTACCGGAAGGTAGATCGTCCATCCTCATACTATACAGATCGGAGGTCCAACATCTAACGTGACGCGGCGGTAGCTCAGACTTTCACAATTACATAAACGCTCCAGCGGCTGTAGCTCTCCCAATAACAAATAGTACTAAATTTAAACTGTGCCTTTTCACCACCATGGCTTCAACAACCACTAAAGAAACAGAGAAGCACTGCGTCCTATGCTGCCAAGAAGTCAATATCTTCGCCTTGGGAAAATGCGACCACCCAGTTTGTTACCGCTGCTCCACCAAAATGAGGGTGCTGTGCGACCAGAAGTACTGCGCCGTCTGCCGGGAGGAGCTCGACAAGGTGGTGTTCGTGAAAAAACTGGAGGCCTTCTCGTCTCTGCCCTACCAGCAGTTCCCCTGTGAGAAGAAGCACAGTATCTATTTCTGTGATGAGAAGATATTTGCCCAGTATAGGCATCTGCTGTTGCCAGAATGCCTCCGCTGTTCAGAGCCGAAGGTCTTCTCCAAGTTTGAGGAGCTTGAGCAGCACATGAGGAAGCAGCATGAGCTCTTCTGTTGCAAGCTCTGCACAAAGCATCTCAAGATCTTCTCCCATGAGCGTAAATGGTACAACCGTAAGGAACTGGCACGTCACAGATTACATGGAGACCCAGACGACACCAGCCACAGAGGACACCCGCTCTGCAAGTTCTGCGATGACCGTTACCTTGATAATGATGAGCTGCTTAAACACTTGCGCAGGGACCACTACTTCTGCCATTTCTGTGATGCAGACGGTTCCCAGGAATACTACAGTGATTACCCGTACCTGAGTGAGCACTTCAGAGAGAGTCACTATCTGTGTGAGGAGGGCCGCTGTGCCACAGAACAGTTCACCCATGCATTCCGCTCTGAGATTGACTACAAGGCCCACAAGGCTGCAGCACACAGCAAGAACCGAGCAGAGGCTCGTCAGAACCGCCACATCGACCTGCAGTTTAACTACGCCCCGAGACAACAGAGGAGAAATGAAGGTACGGTGACAGGTGAGGACTATGAGGAGATGCGTCAGActcgaggaggaagaggaaggccTCATGGGGGACAGAAAAGCTGGAGATACTCCCGAGATGAAGAGGACAGGGAGGTGGCAGCGGCTATGAGGGCATCCATGGCAAAGTAtagacaggaggagagaggagccaTGCAGGAGAGAGGAGCCATGCAGGAGAGAGGAGCCATGCAGGAGAGAGGAGCCATGCAGGAGAGAGGAGCCATGCAGGAGAGAGGAGCCATGCAGGAGAGAGGAGCAATGCAGGAGAGAGGAGCCATGCAGGAGAGGATGGCTCCCAAACactgcagagaggagaggacgGAGAGAACTGAACCAGAAGAGCCCAGACACAGAACCGGACACATCAAACCAATAAGCAAACCTCCAGTAAGAACAATGAAGACCGCTAATCTAGGTGATGAAGAAGATGACTTCCCAGCTTTAGGAGGCAGAGCTGCTCCAGCCATTGTAAAGCCATGTCATGCGACGCAAACAGCAGCCCATGCAGCTCTGAAGGAAGACGACTTCCCTAGCCTCTCAGCTGTATCTGTTGCATCCCCTATGACCCCAGCTTACTCTGCCCAGCCTAAGAAGAATTCCTCTTTCCAGGAGGAGGATTTTCCGGCGCTCGTGTCCAAAATCCGGCCCCTCAAACACGCAGCTGGCACCAAGTCTGCTTGGTCCAACCATACTGCTGTAACTAAACCCAGCTCTCAACCCCCACTGTCCTCtagacctcctcctcctctttcaacTGCATCTTCTGGCCCTCAGCTCCTCTCCTCAAACTCTTCATCTTCACGGAGGAAAAAGAAGGTAGGCGAGAACGGAAAACCAACATCTACCCGGTCTCCTCCTTCATCCGATGATGATAACAACGGAGGAGTGACTCAGCAAGAGTTCCGTTCAGTGCCCACCATGATGGATATCTCCTCTTTGCTCACTGTTAAAGGAGGCAAGAGCAAACCCTCCGCTGTGACCACCAACCCTCCAAATCCAACCCCCAACACTCCCCCTACCTCCAAAGCcagcaagaagaaaaaaacgcaGAAGAACACGTCTGATCCCTCTACATCGGTGTCTTCGATGTCAGGGACGACACAAACTGTAGTTGCAAACTCAGTGGAAACAGCAGCGCAAAAGGAGAACGTCCCTGAGAAAAGTTGGAGCAAACCCCCCTCCAGTGCTGCGACAGCACCACTGATGAGTGGATTGGCTAATGGCCACCCTGAGAAATCACCACCCATTAGTGAGGAGGCAGTTGCAATAACCCTCCATCCCAAGCCAGATCCCCCTCTTGATCAGGAGGAAGAGTTCCCTGCTCTCATGACCAAGAACCCACCACCAGGCTTCAAGTCCTCCTTCCCGCTGAAGGCCTCAGCTTCTGCCCCATCCCCATCCCCAGCTTTGCCCCCACCTCCACCTGGCCTGGGCATCTCAGCCACTAAACCTCCCCCAGGATTCACTGGGATCCCCCTCAACAGCAATGTGGTGGAGCCCGCTCCGTCTGCAGTCAACCCGCCCCCCAAGGTGTCAAGCAGTGGTTACCTGGTGCCAGAGGACTTCCATCAGAGGAACCTGGAGCTAATCCAGTCTATTAGAAAGTACCTCCACAACGATGAGTCAAAGTTCAACCAGTTCAAAAACTTCTCTGCACAGTTCAGACAGAGTGTGATATCAGCAGTCCAGTACCACAGCAGCTGCAAGGACCTGCTCGGAGACGACTTCAACCGCATCTTCAACGAGCTGCTGGTGCTCTTGCCAGACACTGGCAAGCAGCAGGAGCTCCTGACTGCCCAGGCAGACTGTAAGGCGCTGGAGAAGCAGTCAGGCACTGGAGGaggaaagaagaacaagaacaagaagaaCGCCTGGCAGATGCCGACCGCAATGGCTAACGCGGCAGCTGAGCTGGACTGCCAGGTGTGCCCCACTTGCAGACAGGTACTGGCCCCAAAAGACTTCAACTCCCACAGAACGCTGCACACTGGGGAAAATGAGGAGTTCCCTTCCTTGCAGTCGATTAGCCGTATCATCAGCTAGCCCCTCGATTTCCTCTGCTCCGTTTGCCATCGCGGGTCAGGTTTTCAGTTGCCCATGCAGCAGCCAGTGTGGGAAAACAGCAGCCTGTTTGTTGGGGACCATGTCCCAGTGGAGTTTGGGGCTTATAGCTCATAACAAATTGGAATTTAAGATGGTTTATGGTGTTACTACTTTCTAAGGGGATCATGTTGATAGGTTTATGTGAATGGTTTCACAGTTTAAACAGTGTTGCCCCATCTCAGCTCTTATTTCCACTCGCATCCCTCGAGGACGTCTCCAGCTGGCACTGGCACCGGCCACGTCGAACTACAActcttgatttatttaatgaaagaggagagaaaagctAAGGCCTTACTTGAATGCTTTGCTTCCTAATACAAAAATTGTattgatttacattttttaccttGCTTTGTGTTTTCACTTAGACCGAAGatgacaaaatgtattttgttggcATCAAAGTTGATAAAGTATGTATGATTTCGCCAGCGGGGCTgcttggtttaaaaacaaaataaacacatatgtTCGGTTTAA

Function

NR:

description
PREDICTED: zinc finger protein 598-like, partial

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K22381 ZNF598; E3 ubiquitin-protein ligase ZNF598

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825287.1 True 3675 mRNA 0.51 12 6738111 6748409

Neighbor

gene id symbol gene type direction distance location
drg2 drg2,LOC107720047,LOC107674714 coding downstream 19214 6711624 ~ 6718897 (-)
myo15aa myo15a,LOC102214943,LOC103147438 coding downstream 39724 6650829 ~ 6698387 (-)
llgl1 llgl1,LOC102796592 coding downstream 88852 6607284 ~ 6649259 (-)
desi1a LOC102210395,LOC104922913,LOC103361812,LOC102293927,LOC100707393 coding downstream 153086 6576144 ~ 6585025 (-)
ccdc97 NA coding downstream 387847 6345320 ~ 6350264 (-)
slc25a17 slc25a17,LOC104965902,LOC102798647 coding upstream 1857 6750266 ~ 6756280 (-)
rpusd1 rpusd1 coding upstream 9851 6758260 ~ 6766315 (-)
clcn7 clcn7 coding upstream 66267 6814676 ~ 6831673 (-)
LOC120573992 NA coding upstream 84952 6833361 ~ 6836823 (-)
usp7 usp7 coding upstream 112636 6861045 ~ 6891170 (-)
LOC120574035 NA non-coding downstream 26912 6709402 ~ 6711199 (-)
G152560 flii non-coding downstream 139235 6597999 ~ 6598876 (-)
G152559 flii,LOC102796290 non-coding downstream 140268 6597354 ~ 6597843 (-)
G152548 NA non-coding downstream 309875 6427328 ~ 6428236 (-)
G152497 NA non-coding downstream 346513 6387165 ~ 6391598 (-)
G152577 NA non-coding upstream 8382 6756791 ~ 6757085 (-)
G152720 NA non-coding upstream 264838 7013247 ~ 7013685 (-)
G152712 NA non-coding upstream 273060 7021469 ~ 7038559 (-)
G152730 NA non-coding upstream 452278 7200687 ~ 7200912 (-)
G152729 socs1,LOC100174889 non-coding upstream 455905 7204314 ~ 7206094 (-)
G152567 NA other downstream 17468 6719784 ~ 6720643 (-)
G152441 LOC104944083,LOC103371237,LOC107087166,LOC105933549,LOC100701083,LOC101478422 other downstream 509997 6182408 ~ 6228114 (-)
LOC120574101 NA other downstream 742922 5991937 ~ 5995189 (-)
atp5mf atp5j2,LOC102786280 other downstream 1124389 5574680 ~ 5613722 (-)
bud31 bud31,LOC106595689 other downstream 1155247 5580263 ~ 5582864 (-)
arhgdig NA other upstream 24471 6772880 ~ 6801536 (-)
grin2aa grin2a,LOC102780805 other upstream 821309 7569718 ~ 7723914 (-)
LOC120574885 LOC103375378,LOC104925605,LOC104966930 other upstream 1333729 8082138 ~ 8100398 (-)
G152952 NA other upstream 1692770 8441179 ~ 8444381 (-)
G153172 mrps34,LOC102799846 other upstream 1982988 8731397 ~ 8733019 (-)

Expression


Co-expression Network