cldnk (LOC106925874,LOC103468796,LOC106529779,LOC106946608)


Basic Information

Item Value
gene id cldnk
gene name LOC106925874,LOC103468796,LOC106529779,LOC106946608
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15542947 ~ 15543867 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825665.1
AACACATTTCACCATGGCAACCACGGGCATGCAGTTGCTGGGCCTAATCATGTCCCTtgtggggtgggtgggtggggcgATAGTCTGTGCCATCCCTCTGTGGCGGGTCACTGCCTTCATCGGTAACAACATAGTGACGGCTCAGATCATTTGGGAAGGCCTTTGGATGAATTGCATTGTGCAGAGCACAGGTCAGATCCAGTGTAAGGTGTATGACAGCTTGCTGGCTCTGCCCAGTGACATGCAGGCTGCCCGAGGCCTCACCGTGTTCTCCATTCTGATCTGTGGCCTGGCTCTGTCTCTGGGTGTCCTAGGAGTCAAGTGTACTAAGTGCATCGGTGTAAACAGCGTCAAGGCCCGTATTGCTCGCATCTCGGGCGCCATTTTTGCCATCGCAGGGTTCCTCTACCTTGTGCCCGTCTGCTGGACTGCCCACTCCATCATCAGGGATTTCTATGATCCACATGTGGCAGCCCCACACAAGCGTGAGCTTGGCCCTGCCCTTTACATTGGCTGGGGGGCATCAGCCTTGCTCCTCATTGGGGGATCTCTGCTCTATGCTGGGTCAAGTCCCCCTGGCATGCCAGGCTCTCCCACCTTCAGCAGTGGAGAAAGTAGTCCTCGCAGGGCACCTGCCACACAAGTCAAAGGTTATGTTTAAGTTTCCAAAATTTTGGAATGCCTTCAAGTCCCACAAATACACCCTAAACAATGACAAACCTGACTCCTCTCCTTTTGATTTTGCTACttgtaattattttatatttaatgttattCCAGTTAGCTTTTTTCTCTGAAAAGCTGCAGGAGGCTGTTTGGGAACAACTGAactcattttattatttcatacCTGATATCCTTTAATAACCTTGTTCTCTGTAAgtgttaaatacaataaaagttTTTGTCCTCCAAATCCTC

Function

NR:

description
PREDICTED: claudin-4-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825665.1 True 921 mRNA 0.49 1 15542947 15543867

Neighbor

gene id symbol gene type direction distance location
btr02 LOC104960320,LOC103356290,LOC100690538,LOC106529769 coding upstream 1841 15537621 ~ 15541106 (+)
LOC120575067 NA coding upstream 5107 15535692 ~ 15537840 (+)
znf750 NA coding upstream 43441 15495687 ~ 15499506 (+)
atp5pd atp5h,LOC103361245,LOC101487002 coding upstream 109660 15428818 ~ 15433287 (+)
arhgap44a LOC103361248 coding upstream 152417 15360766 ~ 15390530 (+)
hgs hgs coding downstream 1949 15545816 ~ 15557017 (+)
mrpl12 mrpl12 coding downstream 15451 15559318 ~ 15563403 (+)
LOC120574823 NA coding downstream 23210 15567077 ~ 15570309 (+)
LOC120574430 LOC104960337 coding downstream 116204 15660071 ~ 15661057 (+)
tubb4bl tubb4a,LOC103367161,LOC100712088,LOC103372938,LOC107711200 coding downstream 122519 15666386 ~ 15669387 (+)
G155197 LOC104918611,LOC104960327,LOC102777936,LOC100691075,LOC101487576 non-coding upstream 34628 15507053 ~ 15508319 (+)
G155180 metrnl non-coding upstream 93389 15446884 ~ 15449558 (+)
G155104 NA non-coding upstream 369584 15173092 ~ 15173363 (+)
G155077 NA non-coding upstream 427499 15055351 ~ 15115448 (+)
G155050 NA non-coding upstream 539301 15001008 ~ 15003646 (+)
G155212 NA non-coding downstream 375 15544242 ~ 15544549 (+)
G155257 NA non-coding downstream 117501 15661368 ~ 15731815 (+)
G155346 NA non-coding downstream 347228 15891095 ~ 15892034 (+)
G155342 adgrl1,LOC103392844 non-coding downstream 350007 15893874 ~ 15900522 (+)
G155384 NA non-coding downstream 614784 16158651 ~ 16201112 (+)
rasd2 NA other upstream 14477 15526854 ~ 15528470 (+)
arl16 arl16 other upstream 30137 15510093 ~ 15512810 (+)
ndel1b ndel1,LOC104940291 other upstream 138342 15366920 ~ 15404605 (+)
G155088 NA other upstream 403241 15135791 ~ 15139706 (+)
LOC120575440 LOC102304323 other upstream 550439 14992013 ~ 14992508 (+)
LOC120574525 NA other downstream 343308 15887175 ~ 15891028 (+)
LOC120574544 pet100 other downstream 715817 16259684 ~ 16262058 (+)
camsap3 NA other downstream 771965 16315832 ~ 16387522 (+)
col5a3a col5a3,LOC104952480,LOC102201017,LOC101485068,LOC102299321,LOC100695815,LOC107378343,LOC108243746 other downstream 907366 16451233 ~ 16501704 (+)
olfm2a olfm2,LOC104918560,LOC107378344,LOC100706999 other downstream 977115 16520982 ~ 16563997 (+)

Expression


Co-expression Network