LOC120575093 (LOC104932054,LOC103370794,LOC101074219,LOC100695912,LOC101476535)


Basic Information

Item Value
gene id LOC120575093
gene name LOC104932054,LOC103370794,LOC101074219,LOC100695912,LOC101476535
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5350169 ~ 5358831 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825700.1
CATTGGAATCTCCGCCAGCTGCGCAGACTCAGCAGCCCTCGCGTCGTCACGCCAGGGTTTTCCGTCGGACTGCACGGATTTGGTCgacttatttatttaataagtCGTTATATAATACTCGCCGAGTTAAGGCACACTCTCGCACACGCTGATCATCCTCAACCTACTAGCGCACCCAATGCGGTCTAAAGCCACATGACAGCTCTCTGATCGTCCTCCATCCTCTCCCTGTGGTCTGTCTCCTCACAGCCCGTTCTCCTGACAGACTTGAAGCGACAACGCTGACCTGGATAACCGCTGAGCTTGTGTCCCACACTAAGGGCAGGCCTTCCCAAGCAGACAGACTCCTACATACACCAGTGGACAGACAACAGTGTCAGCAGCCCATTAGCAGCCTGTGGCTCGAGgagcagcagcaccagcagcagcGTCCAACACTGCATCCACACCATcctccctcatcctcctcgTCCTTGTCGCTTCTGACATGGCAGACCCCAGCCTCACATCACCCTCTAGGATCCCGCTGCGCTCCCCCAACAcctctctcaccctctcctTCCCCTTCCTGAGGGAGGGCAGCCGGGTATGGGAGGAAGGGAAAGAGCAGCCGCTGCCTCGGGATTTGCCAAGCCCGTTGCCAACCAAACGCACCCGCACCTACTCGGCTACGGTACGGGCTCACTCAGGTCCGGTGTTTAAGGGCGTGTGTAAGAACTTCTCCAGGTCACAAGGCCACGGCTTCCTCCGACCCTCCCACGGTGGCGAAGACATCTTTGTTCACATCTCCGACATCGACGGGGAGTACGTCCCAGTAGAGGGGGACGAGGTCACGTACAAAGTGAGCCGGGTCCCGCCCAAGAACCTCAAGGTGCAGGCCGTGGAGGTGAAGATCATTCATCTCAACCCGGGGACGAAACACGAGACCTGGTCCGGCCAGATCATCAGCTCGTAGGCCTGAACTCCCGGGCCTGGTGGGTGGGTCATGCTGGGCAGGGGCTGGGTGGGGGAGGGTGGACCCATTGTGGGACTGATGACTTACATTCTGAGCTCATAAACATGTTTCACCTACACAGCAAAGCGCCCAGAGATGATAATAATTCAGGTGGAGCCGTTGTCCACTCACAGAGCTGATTCGCTTTCTTCACAGCTGTCTACACTGGTGGATTTGCTGTGTATGTAAAACTGACCATTTATTCCCACacatgtttaatttatttatatattttctcaTGACAGCAGTAATAAAAGTCAGATTTGAGATGGGAGGGTAAAGTAACAGGGTGGAGTATCAAAGTTGTAAATGGGAAAGAGCTTGTGGGGCCACATATTTCACGGAGATCAGTTGTGTGAATTAAGAAACGCTGGgaaaacatatgtaaacataaCTGTGGTGTAGATCTGCAAACTGAGGCATGACAGCTGAGTTTCACTTCCCTTCTCTCAGGCTGTTGTGCACTTGTTTACTTCGCCAGAGTTTTCAGGATCACATGTTGGATGCAAGTGTGGGTCAGATCACTTGTTTTCACAACCTACACAGTGCAGACGTTGGAAAGATGAGAAGAAACGAAATGGACGTAAAAGCAAGTAGTTTAGGGAATTTAAGTGAAGAGATTGGATAGTTGAGGGAGAGAAAGTAGAAATGGCAGGTTGACCATCCTTGACAGGATGTCTTATGATCTTATTATTTCAGGTCACCAGTTTCATGACCTTTTTACAGGACAAAAAAGTGGAAGATTCATTTTCAAATGGAGATAGGAATGTACTGAAGTGAGAGCAAGTTCAGAGTTAGGAATTCAGTTTGTCTCAGAGAGGAAAAGCATGACGAGAGACCAGGACTTAAGCAGGCAGATGACATTAAACCAAGCAtggatatttcaaaaaatattaaagAATTACACATTTTACTGTTAAAAGGAAAGCGATTGCAAGTATATTGCTGAAAATTGCAGATTCTCAGTTGTATTGTCTTGTTTGTGGTTATTtatttgaattatttatttCCTGGTGTGTTCAgatgtgtgtgtcctcagaTTGCAAGCTCTATACTTTGGGTAATACAGTCAAACGTTACACTTAAACAATTTTAACTTCCACTATGAAAACTGCCAGAAAATCGGCTCCAGATATCACTGTCAGCTTTTTCTCAATTTGTTGTTCTGTTTGAAAATGTCTGTTGCGAATGCGTCTGGAGCCACCAATTTCTCATGAACAAAACGATTTGTAAATCTGTTTTTTCAAaacatgtatctgtgtgtgattTATTAAGCGTAGTCAGTGTGATGGTGAACTACATGACTTCCTAGTTGGTGCCAAACGACATCACATAAACGTTTGTAGTTATTCAGGTTTTGCGCAGTACTGTACTGGATGTCATTTTCTATTCTATCTGTCCCAGAGAGTCTCTATGCATCTCGTCTATCTGTCAGTGTCACTGCCTGGGTTTGTTCagcattacatttatttctgtCATATCAAAGGGCACTTTCTTTTGTGGACGAGCCACAGACTGTGGTGGTGATCCCCATGATTTCTTCTACTGAGCCTTGAAAGAACATTAAAGCATTTTATGAATTACA
>XM_039825701.1
CATTGGAATCTCCGCCAGCTGCGCAGACTCAGCAGCCCTCGCGTCGTCACGCCAGGGTTTTCCGTCGGACTGCACGGATTTGGTCgacttatttatttaataagtCGTTATATAATACTCGCCGAGTTAAGGCACACTCTCGCACACGCTGATCATCCTCAACCTACTAGCGCACCCAATGCGCCCGTTCTCCTGACAGACTTGAAGCGACAACGCTGACCTGGATAACCGCTGAGCTTGTGTCCCACACTAAGGGCAGGCCTTCCCAAGCAGACAGACTCCTACATACACCAGTGGACAGACAACAGTGTCAGCAGCCCATTAGCAGCCTGTGGCTCGAGgagcagcagcaccagcagcagcGTCCAACACTGCATCCACACCATcctccctcatcctcctcgTCCTTGTCGCTTCTGACATGGCAGACCCCAGCCTCACATCACCCTCTAGGATCCCGCTGCGCTCCCCCAACAcctctctcaccctctcctTCCCCTTCCTGAGGGAGGGCAGCCGGGTATGGGAGGAAGGGAAAGAGCAGCCGCTGCCTCGGGATTTGCCAAGCCCGTTGCCAACCAAACGCACCCGCACCTACTCGGCTACGGTACGGGCTCACTCAGGTCCGGTGTTTAAGGGCGTGTGTAAGAACTTCTCCAGGTCACAAGGCCACGGCTTCCTCCGACCCTCCCACGGTGGCGAAGACATCTTTGTTCACATCTCCGACATCGACGGGGAGTACGTCCCAGTAGAGGGGGACGAGGTCACGTACAAAGTGAGCCGGGTCCCGCCCAAGAACCTCAAGGTGCAGGCCGTGGAGGTGAAGATCATTCATCTCAACCCGGGGACGAAACACGAGACCTGGTCCGGCCAGATCATCAGCTCGTAGGCCTGAACTCCCGGGCCTGGTGGGTGGGTCATGCTGGGCAGGGGCTGGGTGGGGGAGGGTGGACCCATTGTGGGACTGATGACTTACATTCTGAGCTCATAAACATGTTTCACCTACACAGCAAAGCGCCCAGAGATGATAATAATTCAGGTGGAGCCGTTGTCCACTCACAGAGCTGATTCGCTTTCTTCACAGCTGTCTACACTGGTGGATTTGCTGTGTATGTAAAACTGACCATTTATTCCCACacatgtttaatttatttatatattttctcaTGACAGCAGTAATAAAAGTCAGATTTGAGATGGGAGGGTAAAGTAACAGGGTGGAGTATCAAAGTTGTAAATGGGAAAGAGCTTGTGGGGCCACATATTTCACGGAGATCAGTTGTGTGAATTAAGAAACGCTGGgaaaacatatgtaaacataaCTGTGGTGTAGATCTGCAAACTGAGGCATGACAGCTGAGTTTCACTTCCCTTCTCTCAGGCTGTTGTGCACTTGTTTACTTCGCCAGAGTTTTCAGGATCACATGTTGGATGCAAGTGTGGGTCAGATCACTTGTTTTCACAACCTACACAGTGCAGACGTTGGAAAGATGAGAAGAAACGAAATGGACGTAAAAGCAAGTAGTTTAGGGAATTTAAGTGAAGAGATTGGATAGTTGAGGGAGAGAAAGTAGAAATGGCAGGTTGACCATCCTTGACAGGATGTCTTATGATCTTATTATTTCAGGTCACCAGTTTCATGACCTTTTTACAGGACAAAAAAGTGGAAGATTCATTTTCAAATGGAGATAGGAATGTACTGAAGTGAGAGCAAGTTCAGAGTTAGGAATTCAGTTTGTCTCAGAGAGGAAAAGCATGACGAGAGACCAGGACTTAAGCAGGCAGATGACATTAAACCAAGCAtggatatttcaaaaaatattaaagAATTACACATTTTACTGTTAAAAGGAAAGCGATTGCAAGTATATTGCTGAAAATTGCAGATTCTCAGTTGTATTGTCTTGTTTGTGGTTATTtatttgaattatttatttCCTGGTGTGTTCAgatgtgtgtgtcctcagaTTGCAAGCTCTATACTTTGGGTAATACAGTCAAACGTTACACTTAAACAATTTTAACTTCCACTATGAAAACTGCCAGAAAATCGGCTCCAGATATCACTGTCAGCTTTTTCTCAATTTGTTGTTCTGTTTGAAAATGTCTGTTGCGAATGCGTCTGGAGCCACCAATTTCTCATGAACAAAACGATTTGTAAATCTGTTTTTTCAAaacatgtatctgtgtgtgattTATTAAGCGTAGTCAGTGTGATGGTGAACTACATGACTTCCTAGTTGGTGCCAAACGACATCACATAAACGTTTGTAGTTATTCAGGTTTTGCGCAGTACTGTACTGGATGTCATTTTCTATTCTATCTGTCCCAGAGAGTCTCTATGCATCTCGTCTATCTGTCAGTGTCACTGCCTGGGTTTGTTCagcattacatttatttctgtCATATCAAAGGGCACTTTCTTTTGTGGACGAGCCACAGACTGTGGTGGTGATCCCCATGATTTCTTCTACTGAGCCTTGAAAGAACATTAAAGCATTTTATGAATTACA

Function

NR:

description
PREDICTED: cold shock domain-containing protein C2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825700.1 True 2579 mRNA 0.47 4 5350169 5358831
XM_039825701.1 False 2513 mRNA 0.47 4 5350169 5358831

Neighbor

gene id symbol gene type direction distance location
gucy2ca gucy2c coding downstream 23499 5309600 ~ 5326670 (-)
LOC120575084 LOC105918010 coding downstream 68528 5276207 ~ 5281641 (-)
zmp:0000000896 card10 coding downstream 188232 5143111 ~ 5161937 (-)
LOC120575075 LOC103368117 coding downstream 209056 5124962 ~ 5141113 (-)
LOC120575081 csnk1e,LOC101067908 coding downstream 226660 5111472 ~ 5123509 (-)
polr3h polr3h coding upstream 1626 5360457 ~ 5366750 (-)
LOC120574211 aco2,LOC103370792,LOC105918004 coding upstream 8234 5367065 ~ 5384844 (-)
tefb LOC106601241,LOC106607162,LOC107091051 coding upstream 40192 5399023 ~ 5413979 (-)
LOC120575348 NA coding upstream 57306 5416137 ~ 5437363 (-)
st13 st13 coding upstream 107420 5466251 ~ 5478667 (-)
G152081 NA non-coding downstream 59808 5287858 ~ 5290361 (-)
G152052 NA non-coding downstream 179517 5170304 ~ 5170652 (-)
G151951 NA non-coding downstream 326077 5013517 ~ 5024092 (-)
G151924 NA non-coding downstream 456851 4869887 ~ 4893318 (-)
G151799 NA non-coding downstream 766009 4583204 ~ 4584160 (-)
G152104 tob2 non-coding upstream 31674 5390505 ~ 5395115 (-)
G152107 NA non-coding upstream 87672 5446503 ~ 5448057 (-)
G152233 ep300 non-coding upstream 149886 5508717 ~ 5509392 (-)
G152249 pdap1,LOC102785718 non-coding upstream 224548 5583379 ~ 5587735 (-)
G152256 NA non-coding upstream 242482 5601313 ~ 5606088 (-)
G152043 cdc42ep1,LOC102301584,LOC102206375,LOC102078793 other downstream 122928 5178316 ~ 5227241 (-)
LOC120574081 grin2b,fmc1,LOC102794452,LOC102794917 other downstream 584676 4585173 ~ 4765493 (-)
LOC120575466 LOC102292836,LOC101471904,LOC100692969,LOC103393382,LOC103468414,LOC102212070,LOC103143659,LOC102784177 other downstream 885178 4416177 ~ 4464991 (-)
LOC120575464 NA other downstream 982826 4361848 ~ 4367343 (-)
G151344 smarca4 other downstream 2033254 3311727 ~ 3316915 (-)
G152114 rbx1 other upstream 103015 5461846 ~ 5464418 (-)
top3a top3a,LOC102783137 other upstream 190460 5549291 ~ 5567539 (-)
atp5mf atp5j2,LOC102786280 other upstream 215849 5574680 ~ 5613722 (-)
bud31 bud31,LOC106595689 other upstream 221432 5580263 ~ 5582864 (-)
LOC120574101 NA other upstream 633106 5991937 ~ 5995189 (-)

Expression


Co-expression Network