pvalb5 (LOC104918844,LOC108239293,LOC100693182,LOC101480216,LOC102194634,LOC104946078)


Basic Information

Item Value
gene id pvalb5
gene name LOC104918844,LOC108239293,LOC100693182,LOC101480216,LOC102194634,LOC104946078
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 11498316 ~ 11501224 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825751.1
GAACTCTCCCTGGATTTGAGGACAGATACGTCAGGTTGCCTCTTGCACTCCGGATCACAAAGCTACAAGAGAGCGTTGGTGGCTTATAAGGACAAAACAGGAGAAGCAGAGATCTGCGCATCATAGGCTCAGAGTGCAAACCTCACCCGAAGAACGGCAGCTACAGAGGACCATGGCATTTGCAGGGATGCTGAGCGCCGAGGACATCCAGGCTGCGGTCCAGGCTTGTCAAGCTCCAGGCACATTCAACTTCAAGTCGTTCTTTGCACAAGTGGGACTGACTGGCTCATCTGAGGAAGATGGGAAAAAAGTCTTTACAATCCTGGACCAAGACAGGAGTGGATACATTGAGGAGGAGGAGCTCAAACTGTTCCTTCAGAATTTCTCTCAGGGAGCAAGGGAGCTGACTGTAGCTGAGACCAAGACTCTGATGGCTGCAGGCGATAAGGATGGTGATGGCAAGATTGGGATGGAAGagtTCTGTGATATCCTGAAATAAAGAGAATAAACATCTTTGACCACGGCTCACTTTCCCTTTTATAAGATAAAAGGGTTTTTCCAGATTGTTTGATGCAAAGACAAAAACCTCAGATATTCTCCTGCTTGCTGCTCTCCCTGTTGATGTGATACAATAATGCATAAGATATTTGGCAGATGGCTAAATCTGATATTAGTTGCATGTGTTTAATCAATTAAGTACCTGTAATtggttaataaatatatttaagatGTGA

Function

NR:

description
PREDICTED: parvalbumin beta-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825751.1 True 734 mRNA 0.45 5 11498316 11501224

Neighbor

gene id symbol gene type direction distance location
LOC120575118 LOC106943715,LOC104918845,LOC103141685 coding downstream 2257 11493384 ~ 11496059 (-)
LOC120575117 NA coding downstream 6517 11489905 ~ 11491799 (-)
trnaq-cug_14 NA coding downstream 11391 11486854 ~ 11486925 (-)
pvalb8 LOC103469263,LOC103141687,LOC103361838,LOC103141679,LOC104946075,LOC102232223 coding downstream 12657 11482048 ~ 11485659 (-)
aimp2 aimp2,LOC102781367 coding downstream 22506 11470019 ~ 11475810 (-)
tecpr1b LOC102779071,LOC100705253,LOC102296174 coding upstream 33806 11535030 ~ 11549060 (-)
baiap2l1b baiap2l1,LOC103367811 coding upstream 56637 11557861 ~ 11588233 (-)
nptx2a nptx2,LOC102777833,LOC101477389,LOC100706047 coding upstream 100109 11601333 ~ 11613286 (-)
srebf1 srebf1 coding upstream 469820 11971044 ~ 11983370 (-)
LOC120574261 tom1l2,LOC104918838,LOC103361751,LOC100706850,LOC102776585 coding upstream 483495 11984719 ~ 12008536 (-)
G154115 NA non-coding downstream 31204 11466908 ~ 11467112 (-)
G154088 NA non-coding downstream 145751 11352203 ~ 11352565 (-)
G154036 NA non-coding downstream 225468 11271819 ~ 11272848 (-)
G153987 NA non-coding downstream 424540 11069043 ~ 11073776 (-)
G153943 LOC104934589,LOC102791985 non-coding downstream 462800 11033206 ~ 11035516 (-)
G154163 bri3,LOC104946088,LOC103141671 non-coding upstream 28472 11529696 ~ 11557733 (-)
G154173 NA non-coding upstream 138804 11640028 ~ 11641512 (-)
G154175 NA non-coding upstream 141893 11643117 ~ 11649924 (-)
G154187 NA non-coding upstream 328720 11829944 ~ 11830183 (-)
G154231 NA non-coding upstream 468181 11969405 ~ 12012480 (-)
G154033 NA other downstream 272770 11203450 ~ 11225546 (-)
tnrc6c1 LOC103361861 other downstream 360788 11098316 ~ 11137528 (-)
LOC120574486 NA other downstream 417709 11078545 ~ 11080607 (-)
LOC120574455 NA other downstream 706751 10784112 ~ 10791565 (-)
gtpbp1 gtpbp1,LOC104924447,LOC102799794 other downstream 1108140 10352158 ~ 10390176 (-)
LOC120574419 NA other upstream 584761 12085985 ~ 12090981 (-)
cep112 NA other upstream 926280 12427504 ~ 12565471 (-)
LOC120575506 LOC100697827 other upstream 1234220 12735444 ~ 12737483 (-)
iqck NA other upstream 1453750 12954974 ~ 12972829 (-)
sun1 sun1,LOC104947709,LOC102193096,LOC103360714 other upstream 1472036 12973260 ~ 13012781 (-)

Expression


Co-expression Network