LOC120575118 (LOC106943715,LOC104918845,LOC103141685)


Basic Information

Item Value
gene id LOC120575118
gene name LOC106943715,LOC104918845,LOC103141685
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 11493384 ~ 11496059 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825750.1
TAAATGGTGTTGCTCAAGGATATataagagagagggaaagtTGCTAGTGGCATTCACCCTCGTCCGCCTTGGTTTTCACTCTCCTCAACGCAACTCAAAGACTAAAACATGGCCTGTGCTGGTGTTGTTGATGCTGCTGCACTCAAAGCAGCTCTGGACGGCTGCGCAGCTGCTGAGTCTTTCAACCACAAGACGTTCTTCAAGGCATGCGGCATGTCCAGCAAGTCTGCCGAAGAGGTAAAGAAGGCCTTCCTAATCATTGACCAAGACAACAGCGGCTTCattgaggaggaggagctgaCACTGTTCCTGCAGAACTTCTCTGCTAGTGCCAGAGCACTCACTGACAAGGAAACCAAGGCTTTCCTCGCCGCTGGTGACAGTGATGGTGATGGCAAGATCGGTATTGAAGAGTTTGCCATGCTTGTAAAAGGATAAATATCCGTTGACCAAGATCCAATTCTTTTCATGGAACAGCAAACGCCTTGCAAGATCAGTGATCATCAGCTgaaagaatatttttttataccTTATGTACATGAAACACATATTTTACTGTGAATGTTACTCAGATGTGTCAAATGTTCTGAAGCATGACTTGTGGAAACTGTACAACACCATCTGCACTTTTGAGGAAGAGTGAAAAACTAGGAATAAATACACTTTTGGTGTAAAATCA

Function

NR:

description
PREDICTED: parvalbumin beta-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825750.1 True 679 mRNA 0.44 5 11493384 11496059

Neighbor

gene id symbol gene type direction distance location
LOC120575117 NA coding downstream 1585 11489905 ~ 11491799 (-)
trnaq-cug_14 NA coding downstream 6459 11486854 ~ 11486925 (-)
pvalb8 LOC103469263,LOC103141687,LOC103361838,LOC103141679,LOC104946075,LOC102232223 coding downstream 7725 11482048 ~ 11485659 (-)
aimp2 aimp2,LOC102781367 coding downstream 17574 11470019 ~ 11475810 (-)
LOC120575167 LOC101482156,LOC104918850,LOC102192500,LOC100691827,LOC108239183,LOC101072104 coding downstream 23823 11446935 ~ 11469561 (-)
pvalb5 LOC104918844,LOC108239293,LOC100693182,LOC101480216,LOC102194634,LOC104946078 coding upstream 2257 11498316 ~ 11501224 (-)
tecpr1b LOC102779071,LOC100705253,LOC102296174 coding upstream 38971 11535030 ~ 11549060 (-)
baiap2l1b baiap2l1,LOC103367811 coding upstream 61802 11557861 ~ 11588233 (-)
nptx2a nptx2,LOC102777833,LOC101477389,LOC100706047 coding upstream 105274 11601333 ~ 11613286 (-)
srebf1 srebf1 coding upstream 474985 11971044 ~ 11983370 (-)
G154115 NA non-coding downstream 26272 11466908 ~ 11467112 (-)
G154088 NA non-coding downstream 140819 11352203 ~ 11352565 (-)
G154036 NA non-coding downstream 220536 11271819 ~ 11272848 (-)
G153987 NA non-coding downstream 419608 11069043 ~ 11073776 (-)
G153943 LOC104934589,LOC102791985 non-coding downstream 457868 11033206 ~ 11035516 (-)
G154163 bri3,LOC104946088,LOC103141671 non-coding upstream 33637 11529696 ~ 11557733 (-)
G154173 NA non-coding upstream 143969 11640028 ~ 11641512 (-)
G154175 NA non-coding upstream 147058 11643117 ~ 11649924 (-)
G154187 NA non-coding upstream 333885 11829944 ~ 11830183 (-)
G154231 NA non-coding upstream 473346 11969405 ~ 12012480 (-)
G154033 NA other downstream 267838 11203450 ~ 11225546 (-)
tnrc6c1 LOC103361861 other downstream 355856 11098316 ~ 11137528 (-)
LOC120574486 NA other downstream 412777 11078545 ~ 11080607 (-)
LOC120574455 NA other downstream 701819 10784112 ~ 10791565 (-)
gtpbp1 gtpbp1,LOC104924447,LOC102799794 other downstream 1103208 10352158 ~ 10390176 (-)
LOC120574419 NA other upstream 589926 12085985 ~ 12090981 (-)
cep112 NA other upstream 931445 12427504 ~ 12565471 (-)
LOC120575506 LOC100697827 other upstream 1239385 12735444 ~ 12737483 (-)
iqck NA other upstream 1458915 12954974 ~ 12972829 (-)
sun1 sun1,LOC104947709,LOC102193096,LOC103360714 other upstream 1477201 12973260 ~ 13012781 (-)

Expression


Co-expression Network