LOC120575167 (LOC101482156,LOC104918850,LOC102192500,LOC100691827,LOC108239183,LOC101072104)


Basic Information

Item Value
gene id LOC120575167
gene name LOC101482156,LOC104918850,LOC102192500,LOC100691827,LOC108239183,LOC101072104
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 11446935 ~ 11469561 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825817.1
gataaaggggggggggggaacagaAGACTGAAGTGGTGAGGAGGTTTGAAGTGTTCTGAATTGGTATGTTGCGGTCGTGCTGAACCTGCGCGCTTCCAACCTGTGTGGAGCCTCTGGAGTGGGCACAACTGGTGTCCTCTCATATTCACAGCTGCATCCAGTTGGTGTTGAGCATCAGGTGAGCGTTCGAGCTtcttctttcactttttttgggcttgacttttttttagccgaggagcagagagagtggacacacataaacatatgaCCAGGATCCGCGCCCTGACGCGCTCCGGTGAGCGCATGTTGGACCGGTGAGAGTGTGGAATAGTATGAAGCGCCATGGCTTGGTGTGACCGCAGGGTTCAAACGCTGCTGGCCACTTTGGGGGCTTTTGCTGCTTTTAGCCTGATGACCATCGCCATCGGCACGGACTATTGGCTCTATTCACGGGCGTACATTTGCAACTCCACCAATGCCACCACAGACGAGACCCAGTCACAGCCCAAAACCAAGAGAGGCGATCTCACCCACTCCGGGCTGTGGAGAATCTGTTGTATTGAAGGAATCAATCAAGGCAGCTGTTACAGAATCAACCATTTCCCCGACGATAATGACTACGACACAGACAGCTCTGAATACCTGCTTCGTATAGTCCGTGCCtccagtgtgttccccatcctCAGCACCATCCTGTTGATGCTCGGCGGGCTGTGTGTCGGGGTGGGCCGAGTCTACAACAAGACCAGCAACGTCCTCCTCAGCGCAGGCATTCTCTTTGTAGCTGCAGGTCTGAGCAACATAATTGGCATCATCGTCTACATCTCCAGCAATGCAGGAGACCCCAGTGATAAACGGGACGACGACAAGAagtacacttattcttacgGTTGGTCGTTCTACTTTGGCGCCCTCTCCTTCATAGTGGCGGAAACTGTGGCTGTCCTCGCCATCAACATCTACATTGAGAGAAACAAGGAAGTTCGTTGGAAGGCGCGACGCGAGTTCATCCGTtcgctctcttcctcttccccgTACTCGAGGATACCAAGCTTCCGCTACCGCCGGCGGACATCACGCGCCAGCTCTCATTCAACAGAGGCATCGCGAGAGAACTCGCCTGTGGTCGGTCTGAAGGGGAGGCCATCTTCCAGTGGGGCCCTGGACGAGCTGTCTATGTACGCCCTGGCGAGGGACAGTGTGACGGAGAACACATACAGCCCCGAACATGAGGCGTCTGCTGAGTTCCTCCAGGTCCATAACTGTTTCCCCAATGATATAAAGGACGGGGTGAATCGCAGGACCACACCGGTGTGATGGGCATGTTACTGGGCTGGAGGTTCACCTCGAAGTGGAAGGAATAGTAAATGATGAAAAATCTGTTGGCTAATTTGTTGGAGCCTGAGTGCTTTTGATAGCCTGCCACCAGACGCACAGTATTCAGAGAGACTGTCCTGTTTGAAAGGACCTGAGGAGAAAAGAGGACAGTCAGCTGGACGGAAGATGAGCCAGTTAACCAAACCTTCATTTATCTGCCTGTAGAGATCATCAAAGCAGAATAAATGTACATAATCTGTGCTGTAGCTGATTCGAAATTGGCGTTATCTTTCAACTGTCAAAATGCTTCATTCAGCAGTGTGTGGATCACAACCCTTGTCTGTGTAATGGTCACTAAACATTGTGGGTGTGAGACGTGCCAATCAGCAGTATTCTACCTGTAAATTATTCAACAAGGTGCTAAATGAAATATACTCTTCAACTTGAAAGTGTtccttttgtgtgtgcagtttctATAAAGTGTCGACCCTTCTCCAAAGTTTGTATTGTGTCCTCATAACCAGTTTGGTCTTGCCTTATGCTCTAATCATGTTTGATAGAGACAACAGCACAGTCCTTTAGAATAATGCATGgccttttaaacaaacaaacaaatatttttacGGTAGTATGGTTTGGGAGTCAGTGTCTTCACAAATGATTGACTTGCTGagttgtaatgtattgaatgTTAAGTATTTTAGCTGATTGTACAAGTCAACCATCCAATCCTCCAAATATGAAAAGTATGAAATATGAAAGGTTTTGTCTCCCTCGCTGTCTCGTCCTTAATCTTATTGACATTTGTTAGTTGAACAAAATGTCCATGTTGTCAGTAGAGCACCTATGTTCAATGGCCCCTTTTCATTCACTTCCATATCAGTCCaggccatccatccatcaacaCCTCCCGATGGATGTGACATTGTGTATGTGCCTGTCACAAGAGAAGAGCAGCTGACAAAAAGATGGGCCCTAGAACTGTGAAAACGGCACAGGTCAGGACTTCCCTTTGGTCTGAATGAAAACAGAGAGTTTAATGGATAAGGATCACGCCAGGCGGAGaatgcttgtctgtctgtcacatcACCTGTGAGTCCATCTGGCTGCCTTTTCTCCCCTCCCATGTCGAACACAGGACCAAGAAAGAGGCAGATTGAGCTGTCTGCTCTGCGTCTCTGAAGGCTTCAATAaccagacgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtactgtggtTCTGCACGTCCATGATTCTTTtagtggaatggaatggaattaATGGACCAGGGATAAAGATAAACCTGGTAAAAATGATttgaggtgaaaaaaaaaaacgccataCTGTATTTATTAAGTGCTGTGACTGTGCTGTGAGCTTGAGCTTTCTCCAAGAACCAgctggtgtttgtttttttattttagtcttAGGGCTATTCAGTTGGTTCTGGCTTGGCAAGTGAGCTCACCCAACCACAGAATCGTATTtgattgtattttgtgtgtttgataTACCGTTAGAGATAACACTTCATGTACCAGGCTTAGCTCATAGAATAAAAGAAAGCCATCAGTATGATCTATTCTGAGTGTACTCTTTTATATTACGGTTTTGGGGGTAAAATccaaatgtatttgtttgtaaTGTAAAGCTGTATAGAAaagtacaataaaaaaaagcattgaatgTTCAA
>XM_039825818.1
cccaaaaaaagtcatataaccattccaatgactccgatgctgttcagttaaggtaaattaaaactgcatagttccccttttaaATGTTCTCAAGTCACTGAATAAGTGGCATTTACTGTAGTGTACCTCTTTGTCCAACAGGTGGCAGGATTCTTCATCTGTAAATTAAAGATAATATTTATATTGATTAACTTAATTTGCCTGCTGATCCTATCCAGAGACACAGCTGCACCTCATCCAATGATACAAGAAGTGGAAGGTAGGGAAACACTTGAAATGTGGTTCTTCCATGACGAACACAAGAAATCCCATCTTAGGAAGATCTCTACTCCTCGTGGCTCCCATGTCCCTGGAGCTTGGGATGACTGCAGCCAACACAGTAAAGGACGAATCAATCAAGGCAGCTGTTACAGAATCAACCATTTCCCCGACGATAATGACTACGACACAGACAGCTCTGAATACCTGCTTCGTATAGTCCGTGCCtccagtgtgttccccatcctCAGCACCATCCTGTTGATGCTCGGCGGGCTGTGTGTCGGGGTGGGCCGAGTCTACAACAAGACCAGCAACGTCCTCCTCAGCGCAGGCATTCTCTTTGTAGCTGCAGGTCTGAGCAACATAATTGGCATCATCGTCTACATCTCCAGCAATGCAGGAGACCCCAGTGATAAACGGGACGACGACAAGAagtacacttattcttacgGTTGGTCGTTCTACTTTGGCGCCCTCTCCTTCATAGTGGCGGAAACTGTGGCTGTCCTCGCCATCAACATCTACATTGAGAGAAACAAGGAAGTTCGTTGGAAGGCGCGACGCGAGTTCATCCGTtcgctctcttcctcttccccgTACTCGAGGATACCAAGCTTCCGCTACCGCCGGCGGACATCACGCGCCAGCTCTCATTCAACAGAGGCATCGCGAGAGAACTCGCCTGTGGTCGGTCTGAAGGGGAGGCCATCTTCCAGTGGGGCCCTGGACGAGCTGTCTATGTACGCCCTGGCGAGGGACAGTGTGACGGAGAACACATACAGCCCCGAACATGAGGCGTCTGCTGAGTTCCTCCAGGTCCATAACTGTTTCCCCAATGATATAAAGGACGGGGTGAATCGCAGGACCACACCGGTGTGATGGGCATGTTACTGGGCTGGAGGTTCACCTCGAAGTGGAAGGAATAGTAAATGATGAAAAATCTGTTGGCTAATTTGTTGGAGCCTGAGTGCTTTTGATAGCCTGCCACCAGACGCACAGTATTCAGAGAGACTGTCCTGTTTGAAAGGACCTGAGGAGAAAAGAGGACAGTCAGCTGGACGGAAGATGAGCCAGTTAACCAAACCTTCATTTATCTGCCTGTAGAGATCATCAAAGCAGAATAAATGTACATAATCTGTGCTGTAGCTGATTCGAAATTGGCGTTATCTTTCAACTGTCAAAATGCTTCATTCAGCAGTGTGTGGATCACAACCCTTGTCTGTGTAATGGTCACTAAACATTGTGGGTGTGAGACGTGCCAATCAGCAGTATTCTACCTGTAAATTATTCAACAAGGTGCTAAATGAAATATACTCTTCAACTTGAAAGTGTtccttttgtgtgtgcagtttctATAAAGTGTCGACCCTTCTCCAAAGTTTGTATTGTGTCCTCATAACCAGTTTGGTCTTGCCTTATGCTCTAATCATGTTTGATAGAGACAACAGCACAGTCCTTTAGAATAATGCATGgccttttaaacaaacaaacaaatatttttacGGTAGTATGGTTTGGGAGTCAGTGTCTTCACAAATGATTGACTTGCTGagttgtaatgtattgaatgTTAAGTATTTTAGCTGATTGTACAAGTCAACCATCCAATCCTCCAAATATGAAAAGTATGAAATATGAAAGGTTTTGTCTCCCTCGCTGTCTCGTCCTTAATCTTATTGACATTTGTTAGTTGAACAAAATGTCCATGTTGTCAGTAGAGCACCTATGTTCAATGGCCCCTTTTCATTCACTTCCATATCAGTCCaggccatccatccatcaacaCCTCCCGATGGATGTGACATTGTGTATGTGCCTGTCACAAGAGAAGAGCAGCTGACAAAAAGATGGGCCCTAGAACTGTGAAAACGGCACAGGTCAGGACTTCCCTTTGGTCTGAATGAAAACAGAGAGTTTAATGGATAAGGATCACGCCAGGCGGAGaatgcttgtctgtctgtcacatcACCTGTGAGTCCATCTGGCTGCCTTTTCTCCCCTCCCATGTCGAACACAGGACCAAGAAAGAGGCAGATTGAGCTGTCTGCTCTGCGTCTCTGAAGGCTTCAATAaccagacgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtactgtggtTCTGCACGTCCATGATTCTTTtagtggaatggaatggaattaATGGACCAGGGATAAAGATAAACCTGGTAAAAATGATttgaggtgaaaaaaaaaaacgccataCTGTATTTATTAAGTGCTGTGACTGTGCTGTGAGCTTGAGCTTTCTCCAAGAACCAgctggtgtttgtttttttattttagtcttAGGGCTATTCAGTTGGTTCTGGCTTGGCAAGTGAGCTCACCCAACCACAGAATCGTATTtgattgtattttgtgtgtttgataTACCGTTAGAGATAACACTTCATGTACCAGGCTTAGCTCATAGAATAAAAGAAAGCCATCAGTATGATCTATTCTGAGTGTACTCTTTTATATTACGGTTTTGGGGGTAAAATccaaatgtatttgtttgtaaTGTAAAGCTGTATAGAAaagtacaataaaaaaaagcattgaatgTTCAA
>XM_039825819.1
catataaccattccaatgactccgatgctgttcagttaagGTGGCAGGATTCTTCATCTGTAAATTAAAGATAATATTTATATTGATTAACTTAATTTGCCTGCTGATCCTATCCAGAGACACAGCTGCACCTCATCCAATGATACAAGAAGTGGAAGGTAGGGAAACACTTGAAATGTGGTTCTTCCATGACGAACACAAGAAATCCCATCTTAGGAAGATCTCTACTCCTCGTGGCTCCCATGTCCCTGGAGCTTGGGATGACTGCAGCCAACACAGTAAAGGACGAATCAATCAAGGCAGCTGTTACAGAATCAACCATTTCCCCGACGATAATGACTACGACACAGACAGCTCTGAATACCTGCTTCGTATAGTCCGTGCCtccagtgtgttccccatcctCAGCACCATCCTGTTGATGCTCGGCGGGCTGTGTGTCGGGGTGGGCCGAGTCTACAACAAGACCAGCAACGTCCTCCTCAGCGCAGGCATTCTCTTTGTAGCTGCAGGTCTGAGCAACATAATTGGCATCATCGTCTACATCTCCAGCAATGCAGGAGACCCCAGTGATAAACGGGACGACGACAAGAagtacacttattcttacgGTTGGTCGTTCTACTTTGGCGCCCTCTCCTTCATAGTGGCGGAAACTGTGGCTGTCCTCGCCATCAACATCTACATTGAGAGAAACAAGGAAGTTCGTTGGAAGGCGCGACGCGAGTTCATCCGTtcgctctcttcctcttccccgTACTCGAGGATACCAAGCTTCCGCTACCGCCGGCGGACATCACGCGCCAGCTCTCATTCAACAGAGGCATCGCGAGAGAACTCGCCTGTGGTCGGTCTGAAGGGGAGGCCATCTTCCAGTGGGGCCCTGGACGAGCTGTCTATGTACGCCCTGGCGAGGGACAGTGTGACGGAGAACACATACAGCCCCGAACATGAGGCGTCTGCTGAGTTCCTCCAGGTCCATAACTGTTTCCCCAATGATATAAAGGACGGGGTGAATCGCAGGACCACACCGGTGTGATGGGCATGTTACTGGGCTGGAGGTTCACCTCGAAGTGGAAGGAATAGTAAATGATGAAAAATCTGTTGGCTAATTTGTTGGAGCCTGAGTGCTTTTGATAGCCTGCCACCAGACGCACAGTATTCAGAGAGACTGTCCTGTTTGAAAGGACCTGAGGAGAAAAGAGGACAGTCAGCTGGACGGAAGATGAGCCAGTTAACCAAACCTTCATTTATCTGCCTGTAGAGATCATCAAAGCAGAATAAATGTACATAATCTGTGCTGTAGCTGATTCGAAATTGGCGTTATCTTTCAACTGTCAAAATGCTTCATTCAGCAGTGTGTGGATCACAACCCTTGTCTGTGTAATGGTCACTAAACATTGTGGGTGTGAGACGTGCCAATCAGCAGTATTCTACCTGTAAATTATTCAACAAGGTGCTAAATGAAATATACTCTTCAACTTGAAAGTGTtccttttgtgtgtgcagtttctATAAAGTGTCGACCCTTCTCCAAAGTTTGTATTGTGTCCTCATAACCAGTTTGGTCTTGCCTTATGCTCTAATCATGTTTGATAGAGACAACAGCACAGTCCTTTAGAATAATGCATGgccttttaaacaaacaaacaaatatttttacGGTAGTATGGTTTGGGAGTCAGTGTCTTCACAAATGATTGACTTGCTGagttgtaatgtattgaatgTTAAGTATTTTAGCTGATTGTACAAGTCAACCATCCAATCCTCCAAATATGAAAAGTATGAAATATGAAAGGTTTTGTCTCCCTCGCTGTCTCGTCCTTAATCTTATTGACATTTGTTAGTTGAACAAAATGTCCATGTTGTCAGTAGAGCACCTATGTTCAATGGCCCCTTTTCATTCACTTCCATATCAGTCCaggccatccatccatcaacaCCTCCCGATGGATGTGACATTGTGTATGTGCCTGTCACAAGAGAAGAGCAGCTGACAAAAAGATGGGCCCTAGAACTGTGAAAACGGCACAGGTCAGGACTTCCCTTTGGTCTGAATGAAAACAGAGAGTTTAATGGATAAGGATCACGCCAGGCGGAGaatgcttgtctgtctgtcacatcACCTGTGAGTCCATCTGGCTGCCTTTTCTCCCCTCCCATGTCGAACACAGGACCAAGAAAGAGGCAGATTGAGCTGTCTGCTCTGCGTCTCTGAAGGCTTCAATAaccagacgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtactgtggtTCTGCACGTCCATGATTCTTTtagtggaatggaatggaattaATGGACCAGGGATAAAGATAAACCTGGTAAAAATGATttgaggtgaaaaaaaaaaacgccataCTGTATTTATTAAGTGCTGTGACTGTGCTGTGAGCTTGAGCTTTCTCCAAGAACCAgctggtgtttgtttttttattttagtcttAGGGCTATTCAGTTGGTTCTGGCTTGGCAAGTGAGCTCACCCAACCACAGAATCGTATTtgattgtattttgtgtgtttgataTACCGTTAGAGATAACACTTCATGTACCAGGCTTAGCTCATAGAATAAAAGAAAGCCATCAGTATGATCTATTCTGAGTGTACTCTTTTATATTACGGTTTTGGGGGTAAAATccaaatgtatttgtttgtaaTGTAAAGCTGTATAGAAaagtacaataaaaaaaagcattgaatgTTCAA

Function

NR:

description
voltage-dependent calcium channel gamma-4 subunit-like

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG:

id description
K04869 CACNG4; voltage-dependent calcium channel gamma-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825817.1 True 3036 mRNA 0.47 4 11446935 11459873
XM_039825818.1 False 2859 mRNA 0.44 4 11446935 11469561
XM_039825819.1 False 2758 mRNA 0.45 5 11446935 11469549

Neighbor

gene id symbol gene type direction distance location
cacng1b LOC102192213,LOC100704449,LOC103361845,LOC101079816,LOC108239284 coding downstream 4135 11432470 ~ 11442800 (-)
LOC120574850 LOC104918874,LOC100703643,LOC101483703,LOC106903613 coding downstream 36440 11361879 ~ 11410495 (-)
LOC120574852 NA coding downstream 52282 11392446 ~ 11394653 (-)
LOC120574851 NA coding downstream 55693 11388064 ~ 11391242 (-)
mif4gdb mif4gd coding downstream 99075 11341257 ~ 11347860 (-)
aimp2 aimp2,LOC102781367 coding upstream 458 11470019 ~ 11475810 (-)
pvalb8 LOC103469263,LOC103141687,LOC103361838,LOC103141679,LOC104946075,LOC102232223 coding upstream 12487 11482048 ~ 11485659 (-)
trnaq-cug_14 NA coding upstream 17293 11486854 ~ 11486925 (-)
LOC120575117 NA coding upstream 20344 11489905 ~ 11491799 (-)
LOC120575118 LOC106943715,LOC104918845,LOC103141685 coding upstream 23823 11493384 ~ 11496059 (-)
G154088 NA non-coding downstream 94370 11352203 ~ 11352565 (-)
G154036 NA non-coding downstream 174087 11271819 ~ 11272848 (-)
G153987 NA non-coding downstream 373159 11069043 ~ 11073776 (-)
G153943 LOC104934589,LOC102791985 non-coding downstream 411419 11033206 ~ 11035516 (-)
G153950 NA non-coding downstream 487414 10950571 ~ 10959521 (-)
G154163 bri3,LOC104946088,LOC103141671 non-coding upstream 60135 11529696 ~ 11557733 (-)
G154173 NA non-coding upstream 170467 11640028 ~ 11641512 (-)
G154175 NA non-coding upstream 173556 11643117 ~ 11649924 (-)
G154187 NA non-coding upstream 360383 11829944 ~ 11830183 (-)
G154231 NA non-coding upstream 499844 11969405 ~ 12012480 (-)
G154033 NA other downstream 221389 11203450 ~ 11225546 (-)
tnrc6c1 LOC103361861 other downstream 309407 11098316 ~ 11137528 (-)
LOC120574486 NA other downstream 366328 11078545 ~ 11080607 (-)
LOC120574455 NA other downstream 655370 10784112 ~ 10791565 (-)
gtpbp1 gtpbp1,LOC104924447,LOC102799794 other downstream 1056759 10352158 ~ 10390176 (-)
LOC120574419 NA other upstream 616424 12085985 ~ 12090981 (-)
cep112 NA other upstream 957943 12427504 ~ 12565471 (-)
LOC120575506 LOC100697827 other upstream 1265883 12735444 ~ 12737483 (-)
iqck NA other upstream 1485413 12954974 ~ 12972829 (-)
sun1 sun1,LOC104947709,LOC102193096,LOC103360714 other upstream 1503699 12973260 ~ 13012781 (-)

Expression


Co-expression Network