s1pr2 (s1pr2,LOC103392577)


Basic Information

Item Value
gene id s1pr2
gene name s1pr2,LOC103392577
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 16657915 ~ 16676439 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825886.1
TTCACGCTGGGATCTGCTAGGAGAGAGGAAGTGAGGAGGTGGAACATCTGGACTTCATTTGTGTGCTCCAGACTGGAGAAAAGGTCCAGAAATAGGCTTAATAAATATTTGCCATATTAATTGCGGTCCACAAACCCGCTTCATCGTTATATTTCTAACCTGAGACTCGCGACTCTTTATGGGCATATTACGTTTTCCaaacactctgtctctctctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcctctctgACGCTCCACAGCCCCGTGGAGCTGTTGTTcccagagaggaggagggcaaTCAGACGGACTGTTGGATTAGAGCAACAAAAGAGAAAgtgctgtttaaaaaaagtattatttgACTTTCATCGctcatcttttttctttctttctttctttcttttttttaaatagtcacgCTTTCGGGTGTTTTTTTCTGGTACGGTTTCCGTGGTGGCGCACAGACCCGGTATGGATTTACCAAAGACTAGACGAGACACACCGCCTAGTCCTCCACCAAAGTTTTGATTGTCATCGCTGCCTCTCGACCCCGGAGCAGAGGAAAGCGCCGAACTTTGAAGCAGCATTTCTGGAAAGTGGTGACCACATGTGAGGACATTTGGAGACATATTTTTGTCGGAGCGTCTTTTCGCTGCTCTCTAGGCTACTATATCTCTCATGGGgtgaCCCACATAGAGCTCCTTAGACGTGACCGTGGGACAGGCAGACTCCCTCCCAGCCTGAACCCTCTTCCTGTCCTTTCCTTAAAGGCAATGATTATTGGCTTAGACCTTCTGCACAACTCCACTGTGTGAATGAATCTTTGCCGTAAAGCCGCTGTGCTCTGCCACCCTGTCACCATGAAGAGCAAGTATTCCCAATACTATGATCAGAGTCTGATCCCCTCCTACTATGCCTTTGTAAAGAACATGACCTTACAGGAGCTAGAAAAACGTAATGAGAATAAAAAGCAGCTCACCACACTCAACATTGTCATTGTGGTCCTCTGCACCACCATCATCCTGGAGAATCTGCTTGTCCTCATTGCAGTCTGCCGCAACAAGAAGTTCCACACTGCCATGTTTTTCTTCATTGGCAACCTGGCATTCTCTGACCTGCTGGCAGGCTCGGCCTACATAGCCAATATTTTCCTATCAGGACCAAGGACCTTTGACCTGATGCCTGTGCAGTGGTTCATCCGGGAGGGAACAGCGTTTATTGCTCTGGCAGCTTCAGTCTTCAGCTTGCTGGCGATAGCTACAGAGCGCTATATTGCTATCACCAAGGTTAAGGTGTACGGCTCCACCAAAACGTGCCGCATGTTCCTCCTGATAGGAGCTTGTTGGGTCACCTCCATCCTGCTTGGAGGACTTCCCATTATCGGCTGGAACTGCATCAATGACCTCCCTGAATGCTCAACGGTATTGCCACTCTACTCTAAGAAATACATCCTCTTTGTGGTCACCATTTTCAGCCTCATACTACTCTCCATTGTCATCCTCTATGTGAGGATCTATTTGATTGTTCGCTCCAGCCACCAGGAAGCGACAAACTCACCGGCCTATGCCCTTTTGAAAACTGTCACTATAGTGCTGGGTGTCTTCATCATGTGCTGGCTGCCTGCTTTTACCATCCTCCTTCTAGATTCATCCTGCAGGATACAATTTTGCCCTATCCTCTCGAAAGCAGAGATCTTTTTTGGCTTTGCCACTCTGAACTCGGCACTTAACCCATTGATCTACACACTGCGCAGCAAGGACATGAGAAAGGAGTTTCTGCGTGTGTTGTGCTGCTGGGGGGTGCTGCAAAGCGGGCGGCCAGCTGACCGTTGTCTGGTCCCTCTAAAGAGCTCCAGCTCTCTGGAACACTGCAGCCACAAACACGAACACCAGACCACACCAATCATGCAAGATTGCACCACCTGTGTCTGATATGGTGCAAAGACATCAGAGTACTtgagtatgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgcgtgcgtgcatgcgtgtgcatgagggaaaccatgtgtgtgtacatgagaTCAAGAAGAGAGGCTGTGATGTGCTGGACAGAAAAATAAGCACACCGTGGACTGAGATGCCTGGCAAGGCAACAATGCAGACTTTTTCTTATTACAATCACAATTGTGTGAATTCACAATCAGCATTCACTTCATTGCAGCAGGTGTAGAAACCCAATGTTCAAAGAGGGAACCAATAATAAGGGAGAACTTTCAGAAATGTGAAAATAGCTTTTTCATAGGTACTCTCATTAATTAATATCGATTGCAATCAATTTTCATGTATATGCCTGTCATGGTGTTATtgtttttcctaaaccccaATTGAAAGCCAAAAATAGAAACATAACATGCTTTATATCATAGTTATGGTGAGTTGTTTTGGTCCTTTCAAGAACTGAATCAATGCAAACTGCAAAACTTGCCAAGTTGCACTTTGTAGATTACTTCAGAGACTGTCGTCCTTAGTAAGGTTTAACCACATTACTCTCCTTTACTGATATATGTATACATGGGGCCCACAGATCCATCACTCATTCTTCATTATTCTACAGAGCTGGAGACAGTGATCAACTTCACTCAGCACTGCACTCCACAGAAGCCAAATTAGCATGAGTGCTCCCTTAACAAACCAGGGCTATATATTCCCTATATAACCTTGCTTAAACCATTTGATTAACTACAACAAACTTACATAATCTGCCTACATTTAATGCATGCAATTCTAACTTATTTGTAAGTGCTTATGTATGTATGATATATTCCAGCTCCAGCTTCCATCACTAACACCCCTTCCCGCATTTGTCCTCATAATCTGTCCCTACTGCGTTTACTGTTGTCTTTTGTATCTGAACAGTTTCTGACGAGGAAGGCCTAATCAGAAAGCACATTTCCTGAAGTGAGTTGGCACTGACGAGTTTCACGCAATGACAGCTGTCCAGCTGTTTTGACAAACAGGGCCAATATCTTGATAGTGTTGAAGCAATGTAGCACAAATGTGCTGTATCTGTTTGTGCCTTCCTCTTTGGGAATTAGGCTGAATGTATGTATGAAGTGTTTGGGGCAGGCGCTCCATTGTTGACAGTATTATTGATCATCATTTTGAATTACCAATTGACGAGCAGAGAGTGGGATGAACAGGGTAGGTGACTCTCACTGTGAAGTCATAAATAGCACCATGGACAAAGATTTGTTGTGAACATCCTGGTTTAATTTGCTAGCCATATGCCTTGTGCAGCTAAAGCTGTAAACAAGTCTCATCTTTCCAAAGACCCCTCGCCTCCCTTACAAAATAGGAGAAGATCCGGGTTCAAATTCACACAAGGGGATCTGCCCTCCTGGGAGGTCACCTTCATCCTCATTCTCTGACAGCTACAACATGTAACTTCCTTCTGCCACAGGaagtcctgtttttctttttttggttcCGTTTGTTCAGGGTTACAATAACCTTCCTGTagacacacatttaaaactCTTCTCTCCCTCAGTGTATTTTATATTGACTACCAAGTAGAAATGGTGAAAAGCACTTTGGCAGCTTCAGTGATGTTTGCTTTCCCCCAGTTTTTTTCAGATGGAGAGGTGTTTTTCCAGGTGCTTCTGTGTACCTGTCACTTCATTGTGTTGCTTGACTCTATGTTttataataaatacatgaataactatgtatgtttgtatgtaagtATCTATGTATTTTTGTACAGTTTGTATGATTCGTGTTGTATGAAATGTCTCGTGTGCAATAGCCTTTTGTGTCCAGTAGCACGCTGCCTGTGTAAATCGGTACAATCTGAAACACTAATGTAGGTACATAAACTTTTTGTTAATTGCATTcccttttttatgaaataaataaaatactgaaagaa

Function

symbol description
s1pr2 Predicted to enable sphingosine-1-phosphate receptor activity. Acts upstream of or within several processes, including embryonic morphogenesis; sensory organ development; and sphingosine-1-phosphate receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in several structures, including cardiovascular system; midbrain hindbrain boundary neural rod; midbrain hindbrain boundary neural tube; nervous system; and pleuroperitoneal region. Used to study carcinoma. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 68. Orthologous to human S1PR2 (sphingosine-1-phosphate receptor 2).

NR:

description
PREDICTED: sphingosine 1-phosphate receptor 2

GO: NA

KEGG:

id description
K04292 S1PR2, EDG5; sphingosine 1-phosphate receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825886.1 True 3964 mRNA 0.44 2 16657915 16676439

Neighbor

gene id symbol gene type direction distance location
dnmt1 dnmt1 coding downstream 1956 16643191 ~ 16655959 (-)
icam5 NA coding downstream 36213 16616403 ~ 16621702 (-)
trip10a trip10,LOC104918559,LOC103358209 coding downstream 42059 16599258 ~ 16615856 (-)
rdh8a rdh8,LOC103358204,LOC102201298 coding downstream 218074 16433623 ~ 16439841 (-)
notch3 LOC103358203,LOC104952487 coding downstream 260429 16368606 ~ 16397486 (-)
elavl3 elavl3,LOC106607222,LOC102780136,LOC107754020 coding upstream 163993 16840432 ~ 16856848 (-)
angptl8 NA coding upstream 198645 16875084 ~ 16876941 (-)
LOC120575000 LOC100174873 coding upstream 244707 16921146 ~ 16922018 (-)
LOC120575001 LOC100174873 coding upstream 248713 16925152 ~ 16925977 (-)
LOC120574105 LOC100174873 coding upstream 252636 16929075 ~ 16935610 (-)
G155532 LOC103358202,LOC104952486,LOC100696339 non-coding downstream 291063 16366002 ~ 16366852 (-)
G155512 NA non-coding downstream 357154 16300547 ~ 16300761 (-)
G155508 NA non-coding downstream 376347 16280383 ~ 16281568 (-)
G155507 NA non-coding downstream 377691 16279491 ~ 16280224 (-)
G155500 pet100 non-coding downstream 395885 16259819 ~ 16262030 (-)
G155619 NA non-coding upstream 28096 16704535 ~ 16725040 (-)
G155637 LOC101467188,LOC102307478,LOC102778330 non-coding upstream 55902 16732341 ~ 16733171 (-)
G155644 NA non-coding upstream 64973 16741412 ~ 16742961 (-)
G155659 NA non-coding upstream 90994 16767433 ~ 16769938 (-)
G155693 NA non-coding upstream 157927 16834366 ~ 16836389 (-)
G155583 eif3g other downstream 15784 16569446 ~ 16642131 (-)
angptl6 angptl6 other downstream 31182 16621826 ~ 16626733 (-)
LOC120574432 LOC103392867,LOC102312066,LOC104952514,LOC105932031,LOC102787456,LOC101484431,LOC102198284 other downstream 398890 16230459 ~ 16259025 (-)
LOC120574545 chchd5 other downstream 501848 16153787 ~ 16156067 (-)
G155323 LOC108415010,LOC101162128,LOC104945817 other downstream 842546 15813058 ~ 15815369 (-)
mgrn1b mgrn1 other upstream 335972 17012411 ~ 17023208 (-)
polr3k polr3k other upstream 356546 17032985 ~ 17035040 (-)
unkl unkl,LOC102789129 other upstream 469669 17146108 ~ 17162165 (-)
gper1 gper1,LOC104918709,LOC100699814,LOC101483480 other upstream 489043 17165482 ~ 17173284 (-)
baiap3 baiap3 other upstream 550694 17227133 ~ 17265305 (-)

Expression


Co-expression Network