gtf2f1 (gtf2f1)


Basic Information

Item Value
gene id gtf2f1
gene name gtf2f1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 10166712 ~ 10176011 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825973.1
CTAAACAAAGAAAAGATGAATGGAGATGGCTACCAGGAACCAACATTTTCTAGTCTACGTTTCCTGTCGCCTATTTATAAGACCGGGACAAGTACAATAGGAGTACCTACGCGCGTACCGGTAGTGTACCCAACTAGTCTGAAGCAGCTGCTGATGTGTAGTAAATCCAGAGAGACGACCAACCATGACTTCTCTGGGGGGCAGCAGTTCCTCAGCCACAGAATACACAGTGCGAGTCCCCAAAAACACCAGTAAGAAGTAcaacatcatggctttcaattcAGGAGACCGAGTCAACTGTTCAACTTGGACACAGGCTCGTATGGAAAGAGACATGAGTGCTCGGCGGATATATGGGGAGGAAGAGTCAGCGGATGGCGCGGCTGGCAGTGAGTTTGGCAAAAAGCAGCGTGAGGAAGCACGGCGGAAGAAATATGGTATTGTGACACGTGAGTTCAAAGTGGAGGACCAGCCCTGGATTCTTAAGGTCAATGGCAAGGCCGGCAAGAGGTTCAAAGGTCTGAAGAAGGGCGGTGTTACAGAAAATGCATCCTACTACATCTTTACACAGTGTCCCGATGGAGCCTTCGAGGCTTTCCCTGTCCACGGCTGGTACAACTTTACACCGCAGGCCAAGCACCGAACTCTCACTGctgaggaggctgaggaggagTGGGGCAGAAGAAACAAGGTGGTGAATCACTTCAGCATCATGCTTCAGAGACGTTTCCGGGAGCAGGAGCGCGGtggcgatgatgatgatgatgagaacgAGAAGTcggggaagaagaaaaagaaggggggtgggagagggggcGACCTGCGCATTCACGACCTGGAAGAGGACCTGGAGATGAGCAGCGACGACAGTGACAGCAGCATGGGGGACGATGGAGAGGGCAAGACAAAGGCGAAAAAAGCCACAGGGAAAGGAAAAGccaagaagaagagaaaaagcaGTGACAAAGAGGCCTTGGAGGACAGCGATGACGGTGACTACGAGGGTCTAGAGGTGGATTACATGTCCGATGAAAGCAGCAGTTCAGATGAAGAGCTCGAAAAGGGAAAGCCCAGCAAAGGAGAGCACCACCCCAAAGGGATCGATGAGGCGTCTGAAAGTGAGGAAGAGAGTGAGGAGGAGAAACAGAATGAAGAGGAAgcaaaagaggaggaggaagaagaggaaggaaagaaaaccCCGGTCCAAacggaaaagaagaagaaaaaagACAGCAGCGGCGAGTCGGAAAGCTCCGACGACAGTGACATCGAGGGAGAGACGGCCTCTGCTCTGTTCATGaAAAAGCGCACGCCTCCTAAACGTGGAGGACGCGGCTCTGCAGGCAGCTCCAGGACTGGCAGTCGCCCCGGGACACCATCCATAGACTCCGCCTCCACCTCCAATACACTCCGTGCTGCTGCCAGCAAGCTAGAGCAAGGTAAGAGGCCGACTCCGGGTCCTAGCACTGACTCACCCGCTGCCAAAAGACTGAAGATGGAGCCCAGCAGTCAGAGCCCTGTTCCCTCTGGGAAGAGTACGCCTCAACCCCCATCAGGCAAATCCACCCCTAGCTCAAGTGATGTGCAGCTAACGGAGGAAGCGGTCCGGCGTTACCTGATCCGTAAACCGATGACCACCAAAGACCTGCTGAAGAAGTTCCAGACCAAGCGCACAGGGTTGAGCAGTGAGCAGACTGTCAACGTGCTGGCACAGATCCTGAAGCGGCTCAATCCGGAGCGCAAGAACGTAAACGATAAAATGCACTTCTACCTCACGGAGTAACCGGCGGACGAGAGGTACGGAGCGGCGGGGTTGGAAAGGATGGAGAAGGGAGACGGAAGGGCTGAAATGAACCTCttcacccccccaccccaccgaGAAGGTGTTTTTAAAACCATTTGTCCTGTGACACGCCACAGGATCTGAAGTCGAAACTGTCATCACCACAGGTGGCATTTatgaaaaagtattttgttAAGCATCCTGCATTTGTTTTTCATGCCCTGAAATCTCCCATTAAATAATAGAAGCCTTGTTA
>XM_039825974.1
TAATGTCTTGATTTATTTATATGCGTGTCCCTTTCATTTCACATACACGCCACTAGTGTACCCAACTAGTCTGAAGCAGCTGCTGATGTGTAGTAAATCCAGAGAGACGACCAACCATGACTTCTCTGGGGGGCAGCAGTTCCTCAGCCACAGAATACACAGTGCGAGTCCCCAAAAACACCAGTAAGAAGTAcaacatcatggctttcaattcAGGAGACCGAGTCAACTGTTCAACTTGGACACAGGCTCGTATGGAAAGAGACATGAGTGCTCGGCGGATATATGGGGAGGAAGAGTCAGCGGATGGCGCGGCTGGCAGTGAGTTTGGCAAAAAGCAGCGTGAGGAAGCACGGCGGAAGAAATATGGTATTGTGACACGTGAGTTCAAAGTGGAGGACCAGCCCTGGATTCTTAAGGTCAATGGCAAGGCCGGCAAGAGGTTCAAAGGTCTGAAGAAGGGCGGTGTTACAGAAAATGCATCCTACTACATCTTTACACAGTGTCCCGATGGAGCCTTCGAGGCTTTCCCTGTCCACGGCTGGTACAACTTTACACCGCAGGCCAAGCACCGAACTCTCACTGctgaggaggctgaggaggagTGGGGCAGAAGAAACAAGGTGGTGAATCACTTCAGCATCATGCTTCAGAGACGTTTCCGGGAGCAGGAGCGCGGtggcgatgatgatgatgatgagaacgAGAAGTcggggaagaagaaaaagaaggggggtgggagagggggcGACCTGCGCATTCACGACCTGGAAGAGGACCTGGAGATGAGCAGCGACGACAGTGACAGCAGCATGGGGGACGATGGAGAGGGCAAGACAAAGGCGAAAAAAGCCACAGGGAAAGGAAAAGccaagaagaagagaaaaagcaGTGACAAAGAGGCCTTGGAGGACAGCGATGACGGTGACTACGAGGGTCTAGAGGTGGATTACATGTCCGATGAAAGCAGCAGTTCAGATGAAGAGCTCGAAAAGGGAAAGCCCAGCAAAGGAGAGCACCACCCCAAAGGGATCGATGAGGCGTCTGAAAGTGAGGAAGAGAGTGAGGAGGAGAAACAGAATGAAGAGGAAgcaaaagaggaggaggaagaagaggaaggaaagaaaaccCCGGTCCAAacggaaaagaagaagaaaaaagACAGCAGCGGCGAGTCGGAAAGCTCCGACGACAGTGACATCGAGGGAGAGACGGCCTCTGCTCTGTTCATGaAAAAGCGCACGCCTCCTAAACGTGGAGGACGCGGCTCTGCAGGCAGCTCCAGGACTGGCAGTCGCCCCGGGACACCATCCATAGACTCCGCCTCCACCTCCAATACACTCCGTGCTGCTGCCAGCAAGCTAGAGCAAGGTAAGAGGCCGACTCCGGGTCCTAGCACTGACTCACCCGCTGCCAAAAGACTGAAGATGGAGCCCAGCAGTCAGAGCCCTGTTCCCTCTGGGAAGAGTACGCCTCAACCCCCATCAGGCAAATCCACCCCTAGCTCAAGTGATGTGCAGCTAACGGAGGAAGCGGTCCGGCGTTACCTGATCCGTAAACCGATGACCACCAAAGACCTGCTGAAGAAGTTCCAGACCAAGCGCACAGGGTTGAGCAGTGAGCAGACTGTCAACGTGCTGGCACAGATCCTGAAGCGGCTCAATCCGGAGCGCAAGAACGTAAACGATAAAATGCACTTCTACCTCACGGAGTAACCGGCGGACGAGAGGTACGGAGCGGCGGGGTTGGAAAGGATGGAGAAGGGAGACGGAAGGGCTGAAATGAACCTCttcacccccccaccccaccgaGAAGGTGTTTTTAAAACCATTTGTCCTGTGACACGCCACAGGATCTGAAGTCGAAACTGTCATCACCACAGGTGGCATTTatgaaaaagtattttgttAAGCATCCTGCATTTGTTTTTCATGCCCTGAAATCTCCCATTAAATAATAGAAGCCTTGTTA
>XM_039825975.1
CTACGTTTCCTGTCGCCTATTTATAAGACCGGGACAAGTACAATAGGAGTACCTACGCGCGTACCGGTGTACCCAACTAGTCTGAAGCAGCTGCTGATGTGTAGTAAATCCAGAGAGACGACCAACCATGACTTCTCTGGGGGGCAGCAGTTCCTCAGCCACAGAATACACAGTGCGAGTCCCCAAAAACACCAGTAAGAAGTAcaacatcatggctttcaattcAGGAGACCGAGTCAACTGTTCAACTTGGACACAGGCTCGTATGGAAAGAGACATGAGTGCTCGGCGGATATATGGGGAGGAAGAGTCAGCGGATGGCGCGGCTGGCAGTGAGTTTGGCAAAAAGCAGCGTGAGGAAGCACGGCGGAAGAAATATGGTATTGTGACACGTGAGTTCAAAGTGGAGGACCAGCCCTGGATTCTTAAGGTCAATGGCAAGGCCGGCAAGAGGTTCAAAGGTCTGAAGAAGGGCGGTGTTACAGAAAATGCATCCTACTACATCTTTACACAGTGTCCCGATGGAGCCTTCGAGGCTTTCCCTGTCCACGGCTGGTACAACTTTACACCGCAGGCCAAGCACCGAACTCTCACTGctgaggaggctgaggaggagTGGGGCAGAAGAAACAAGGTGGTGAATCACTTCAGCATCATGCTTCAGAGACGTTTCCGGGAGCAGGAGCGCGGtggcgatgatgatgatgatgagaacgAGAAGTcggggaagaagaaaaagaaggggggtgggagagggggcGACCTGCGCATTCACGACCTGGAAGAGGACCTGGAGATGAGCAGCGACGACAGTGACAGCAGCATGGGGGACGATGGAGAGGGCAAGACAAAGGCGAAAAAAGCCACAGGGAAAGGAAAAGccaagaagaagagaaaaagcaGTGACAAAGAGGCCTTGGAGGACAGCGATGACGGTGACTACGAGGGTCTAGAGGTGGATTACATGTCCGATGAAAGCAGCAGTTCAGATGAAGAGCTCGAAAAGGGAAAGCCCAGCAAAGGAGAGCACCACCCCAAAGGGATCGATGAGGCGTCTGAAAGTGAGGAAGAGAGTGAGGAGGAGAAACAGAATGAAGAGGAAgcaaaagaggaggaggaagaagaggaaggaaagaaaaccCCGGTCCAAacggaaaagaagaagaaaaaagACAGCAGCGGCGAGTCGGAAAGCTCCGACGACAGTGACATCGAGGGAGAGACGGCCTCTGCTCTGTTCATGaAAAAGCGCACGCCTCCTAAACGTGGAGGACGCGGCTCTGCAGGCAGCTCCAGGACTGGCAGTCGCCCCGGGACACCATCCATAGACTCCGCCTCCACCTCCAATACACTCCGTGCTGCTGCCAGCAAGCTAGAGCAAGGTAAGAGGCCGACTCCGGGTCCTAGCACTGACTCACCCGCTGCCAAAAGACTGAAGATGGAGCCCAGCAGTCAGAGCCCTGTTCCCTCTGGGAAGAGTACGCCTCAACCCCCATCAGGCAAATCCACCCCTAGCTCAAGTGATGTGCAGCTAACGGAGGAAGCGGTCCGGCGTTACCTGATCCGTAAACCGATGACCACCAAAGACCTGCTGAAGAAGTTCCAGACCAAGCGCACAGGGTTGAGCAGTGAGCAGACTGTCAACGTGCTGGCACAGATCCTGAAGCGGCTCAATCCGGAGCGCAAGAACGTAAACGATAAAATGCACTTCTACCTCACGGAGTAACCGGCGGACGAGAGGTACGGAGCGGCGGGGTTGGAAAGGATGGAGAAGGGAGACGGAAGGGCTGAAATGAACCTCttcacccccccaccccaccgaGAAGGTGTTTTTAAAACCATTTGTCCTGTGACACGCCACAGGATCTGAAGTCGAAACTGTCATCACCACAGGTGGCATTTatgaaaaagtattttgttAAGCATCCTGCATTTGTTTTTCATGCCCTGAAATCTCCCATTAAATAATAGAAGCCTTGTTA
>XM_039825976.1
CTAAACAAAGAAAAGATGAATGGAGATGGCTACCAGGAACCAACATTTTCTAGTCTACGTTTCCTGTCGCCTATTTATAAGACCGGGACAAGTACAATAGGAGTACCTACGCGCGTACCGGTAGTGTACCCAACTAGTCTGAAGCAGCTGCTGATGTGTAGTAAATCCAGAGAGACGACCAACCATGACTTCTCTGGGGGGCAGCAGTTCCTCAGCCACAGAATACACAGTGCGAGTCCCCAAAAACACCAGTAAGAAGTAcaacatcatggctttcaattcAGGAGACCGAGTCAACTGTTCAACTTGGACACAGGCTCGTATGGAAAGAGACATGAGTGCTCGGCGGATATATGGGGAGGAAGAGTCAGCGGATGGCGCGGCTGGCAGTGAGTTTGGCAAAAAGCAGCGTGAGGAAGCACGGCGGAAGAAATATGGTATTGTGACACGTGAGTTCAAAGTGGAGGACCAGCCCTGGATTCTTAAGGTCAATGGCAAGGCCGGCAAGAGGTTCAAAGGTCTGAAGAAGGGCGGTGTTACAGAAAATGCATCCTACTACATCTTTACACAGTGTCCCGATGGAGCCTTCGAGGCTTTCCCTGTCCACGGCTGGTACAACTTTACACCGCAGGCCAAGCACCGAACTCTCACTGctgaggaggctgaggaggagTGGGGCAGAAGAAACAAGGTGGTGAATCACTTCAGCATCATGCTTCAGAGACGTTTCCGGGAGCAGGAGCGCGGtggcgatgatgatgatgatgagaacgAGAAGTcggggaagaagaaaaagaaggggggtgggagagggggcGACCTGCGCATTCACGACCTGGAAGAGGACCTGGAGATGAGCAGCGACGACAGTGACAGCAGCATGGGGGACGATGGAGAGGGCAAGACAAAGGCGAAAAAAGCCACAGGGAAAGGAAAAGccaagaagaagagaaaaagcaGTGACAAAGAGGCCTTGGAGGACAGCGATGACGGTGACTACGAGGGTCTAGAGGTGGATTACATGTCCGATGAAAGCAGTTCAGATGAAGAGCTCGAAAAGGGAAAGCCCAGCAAAGGAGAGCACCACCCCAAAGGGATCGATGAGGCGTCTGAAAGTGAGGAAGAGAGTGAGGAGGAGAAACAGAATGAAGAGGAAgcaaaagaggaggaggaagaagaggaaggaaagaaaaccCCGGTCCAAacggaaaagaagaagaaaaaagACAGCAGCGGCGAGTCGGAAAGCTCCGACGACAGTGACATCGAGGGAGAGACGGCCTCTGCTCTGTTCATGaAAAAGCGCACGCCTCCTAAACGTGGAGGACGCGGCTCTGCAGGCAGCTCCAGGACTGGCAGTCGCCCCGGGACACCATCCATAGACTCCGCCTCCACCTCCAATACACTCCGTGCTGCTGCCAGCAAGCTAGAGCAAGGTAAGAGGCCGACTCCGGGTCCTAGCACTGACTCACCCGCTGCCAAAAGACTGAAGATGGAGCCCAGCAGTCAGAGCCCTGTTCCCTCTGGGAAGAGTACGCCTCAACCCCCATCAGGCAAATCCACCCCTAGCTCAAGTGATGTGCAGCTAACGGAGGAAGCGGTCCGGCGTTACCTGATCCGTAAACCGATGACCACCAAAGACCTGCTGAAGAAGTTCCAGACCAAGCGCACAGGGTTGAGCAGTGAGCAGACTGTCAACGTGCTGGCACAGATCCTGAAGCGGCTCAATCCGGAGCGCAAGAACGTAAACGATAAAATGCACTTCTACCTCACGGAGTAACCGGCGGACGAGAGGTACGGAGCGGCGGGGTTGGAAAGGATGGAGAAGGGAGACGGAAGGGCTGAAATGAACCTCttcacccccccaccccaccgaGAAGGTGTTTTTAAAACCATTTGTCCTGTGACACGCCACAGGATCTGAAGTCGAAACTGTCATCACCACAGGTGGCATTTatgaaaaagtattttgttAAGCATCCTGCATTTGTTTTTCATGCCCTGAAATCTCCCATTAAATAATAGAAGCCTTGTTA

Function

symbol description
gtf2f1 Predicted to enable RNA polymerase II general transcription initiation factor activity and TFIIF-class transcription factor complex binding activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within positive regulation of transcription elongation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIF complex. Orthologous to human GTF2F1 (general transcription factor IIF subunit 1).

NR:

description
general transcription factor IIF subunit 1

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K03138 TFIIF1, GTF2F1, TFG1; transcription initiation factor TFIIF subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825973.1 True 2039 mRNA 0.53 14 10166712 10176011
XM_039825974.1 False 1971 mRNA 0.53 14 10166712 10175863
XM_039825975.1 False 1982 mRNA 0.53 14 10166712 10175957
XM_039825976.1 False 2036 mRNA 0.53 14 10166712 10176011

Neighbor

gene id symbol gene type direction distance location
cacna1aa NA coding downstream 17230 10061286 ~ 10149482 (-)
LOC120574373 NA coding downstream 729846 9435292 ~ 9436866 (-)
LOC120574659 NA coding downstream 741666 9424509 ~ 9425046 (-)
LOC120574660 NA coding downstream 746014 9420152 ~ 9420698 (-)
LOC120574369 NA coding downstream 758230 9407854 ~ 9408482 (-)
luc7l3 luc7l3,LOC102798435 coding upstream 432987 10608998 ~ 10618057 (-)
LOC120574864 tob1 coding upstream 497331 10673342 ~ 10677290 (-)
spag9a NA coding upstream 562897 10738908 ~ 10772253 (-)
LOC120574453 NA coding upstream 632296 10808307 ~ 10811425 (-)
LOC120574454 LOC106520401,LOC108239207,LOC102796162 coding upstream 636842 10812853 ~ 10820285 (-)
G153631 NA non-coding downstream 127927 10034440 ~ 10038785 (-)
G153630 NA non-coding downstream 139013 10025317 ~ 10027699 (-)
G153629 NA non-coding downstream 141585 10024923 ~ 10025127 (-)
G153623 NA non-coding downstream 141946 10020171 ~ 10024766 (-)
G153624 NA non-coding downstream 144517 10019361 ~ 10022195 (-)
G153671 NA non-coding upstream 110624 10286635 ~ 10294166 (-)
G153734 NA non-coding upstream 418732 10594743 ~ 10595007 (-)
G153937 NA non-coding upstream 729344 10905355 ~ 10907608 (-)
G153950 NA non-coding upstream 774560 10950571 ~ 10959521 (-)
G153943 LOC104934589,LOC102791985 non-coding upstream 857195 11033206 ~ 11035516 (-)
LOC120574648 NA other downstream 343719 9822145 ~ 9822993 (-)
LOC120574583 NA other downstream 429878 9735626 ~ 9736834 (-)
LOC120574609 NA other downstream 433517 9732686 ~ 9733195 (-)
LOC120574633 LOC102776372 other downstream 435472 9730610 ~ 9731240 (-)
G153584 NA other downstream 444088 9722181 ~ 9722624 (-)
gtpbp1 gtpbp1,LOC104924447,LOC102799794 other upstream 176147 10352158 ~ 10390176 (-)
LOC120574455 NA other upstream 608101 10784112 ~ 10791565 (-)
LOC120574486 NA other upstream 902534 11078545 ~ 11080607 (-)
tnrc6c1 LOC103361861 other upstream 922305 11098316 ~ 11137528 (-)
G154033 NA other upstream 1027439 11203450 ~ 11225546 (-)

Expression


Co-expression Network