banf1 (banf1,LOC106523121,LOC104926323,LOC108233898)


Basic Information

Item Value
gene id banf1
gene name banf1,LOC106523121,LOC104926323,LOC108233898
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 26681536 ~ 26687263 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU229098
GGTGCCTCGGAAACAGAAAGCAGTGGCGCCGCGCTCCATGGAACTACGCCAAGAGGCCTTAACATTCAGTCTACTCTGGACACAGTAAAAGTTCTGTAGTTGGTGAGCTTTGACCGCCTACAAAAGCAGCCATGTCGTCGACATCCCAAAAACATAGAGATTTTGTGGCCGAGCCCATGGGTGAAAAGCCTGTGATGGCTCTTGCAGGCATTGGAGAGGTCCTTGGCAAGAGACTGGAGGAAAaaggttttgacaagGCGTATGTCGTCCTCGGGCAGTTTCTAGTGCTAAAGAAAGACGAGGAGCTTTTCCGGGACTGGCTGAAGGACACTTGCGGGGCAAATGTCAAACAACAAGGTGACTGCTATGGCTGTCTTAAAGAATGGTGTGACGCCTTCTTATAAAGCATTCAGTCGTTGTTTTATACTTCTAAAGTCCAAACTGTACATTACATTTGTGATCTTGATTCAATTCAGCTACACCATATATATGAACTGACAAAGTCCACTCTAGGGAGAGTATTGAagtcaatttatttttaaattatacTTAAACCCCCCAAACTgaattcacacattacacacacaggtagCCCTTTTATGGTGGACATTTTAACTTGTCTGAGTAGTAAAAGTCCATTTCGGTCTACCAGTAAGTTTTATGTCATGTCACTGAGCCAGCATGCAAGTATCAGGGCTGTGACACAGGGACACCTaaatgtaatgcagcctttattAATGTTATGCTGTGAGAACCAACTATACAGGTGCCTCAGGCTAACACTGTTAGTTTCCAGTTTTGGGAAAAAGCGGCACATGTTCATAATATTAATGTTGTCCGACGTCATTGGAATATTGCATGTACCTTCTGCTAAAGGTTGAATTTTAAATGTCCATTTTCCATTGTTGGTCATGCACTGGGAATGTTTTTTAGCTAAAAATGGCTAGCTTGTTCTATGTTTAAACCTTATACCTTCAGACACATTTTGATGTTTCAGTTCAGCACccatttttctttctgtgtaACCTGATGATTTACCAGTACAATATTTGTACTCACCTGTCACTCTTGGGCTTCTTACCCCGTTTGCCTGTTTTTAAAGCCATtggaaagttgatgtaagctttttttttttttttttttaaatatataaatggcAAATCATATCAGTTTAGTATTATGTACTTTTGGTCCACCAACAATGTTTAAAAGAGGTGCATTGTCTGTTTGAACTGTCTTACAGCGGGTGTGACTGATTTATGTGACACAAAAACTAATCCTCAAAACTAATCCTACACTGTTTTAGcagaatatttttattttttacaaaaacttttTACTTTTGATCTCAAATAAAGAAACAACGTGGCCAGACCCCCACATATGGCctgctcaaagtttgtttgaACCCGAAGATGGAAAAGTATATGAATAAAGATGCCAATGCAACATTCTCAAACACTTTCAAAAACGTTTCAGTCTATTGCTGATTGCTGCAGCCTTTACATCCAATAATTTACTTACAAGTACAGGTATGTGTCTGCCAGATAAGCTAGCAGTAAACATACATTACAAACaattaggggtgtgcaaaaaaaatcgattcacattcgaatcgcgattcaagctctacagattcaaaatcgatttatagaattccaaaaatcaattcatattttttacgtgggaaaagtaactacatttacatactgtgaatcgttttttaaatcgagaatcgttttttgaatcgaatcttgagcctgaaaatcgatatcgaatcgtgacattttctgaattgtgCATCCCTCCAAACAATACATTTAGTGCCTGCTGGAAGTGCTGGGTGTAAAGAGAAATGAGTTGTGACAAGTATAACACATTCATATTGATGCAACGTGTTGGTGTGCTTAAGCAGCTACCAGGATGTAAGATTTTGATTAAACACTGTCCGAATTATATGACAGCCATCTAAGTCAAAACCCATGACGTGATACAGTAAACCAATCAGCACCCTGTTTGTCCCTAAGAGGCTAAAGTAGTTGATATGCTGTACTTGTATAATAGAATGTATTTAAAGCTTCAGTAGAAATTGACTTAGTTTAACAAGAGTGAGGTAAAACCCCATCCCTTTTCTTTACCTTCACAAAAAGATAAATCCATGGTCACGGTTTCCACTGGCTTAAATGAAGATGGAATACCACAGTATGTCCAGCACGGATGTATTTTGTAACACCAACAAGCCTGATTTAGGTCAGGTCTTCATAACTGAGCTTGAAATGATCTTGATGCCTTAATGCATGCTAGTTAAAGCATTTTATTTACTCAGATGAACTATAAAACCTGCAGTAACGCATGTCCAGGCTGTGTCACTTAATCTTCCACACACCACCTGCCACTTGAAGATGTAAC
>XM_039777602.1
TCTGTCAATGGGAGTCCCCGGCCTTGTTGATGAGGCCCACTGCAGTCAGAAGAAAACTGTTCTTGTGACATGAGGTTTGGTCCTAAAGGACCGCATAAAGTTTGTGTCCAAGGGTGGGAGGGATCGGCCACAATCTTTCCTGACCGCCTCAGGGTCCCGGAGGTGTTCCGGGAGGGatggcagattgcagccaatcaccttctcagcagAGTGATGATACGCTGctgtctgcccttgtccttgtcAGTGGCAGCAGCGTGACAGGTAGAGGAGGGGAGGATGGACTCGATGATGGCAGTGTAGAAGTGCAACATCATTGTCTTTGGTAGGTTGAACTTCTTTAGCTGTTGCAGGAAAGTACATTCTGTTCTGTGCCTCATCGATGAGGTCCTGGAAGATGATGTAACCCGGGAAGCGCAAGGACTCCCCAGTGTTGACTGGGGAGTCACCCAGGGTGATGGAGGCGGGTGGGGCTGTGTTCTTCCAGAaatccacaaccatctccactgtcttcagAGCATAGAGCTCTAAGTTGTCCTGAATGCACCAGGTCATTTAGTTGGTGTTAATAAAATAACCCACGGCTGTGATCTAATTATGATGAATGATGCGTTGACAAAATGCCCAGTGTCCTAATGCTTTCATATTATAATGTACAGTACAAACAATACATTTGATTCAAAGTAAGCATTCATAGGATATAAATTGGCCAAATAAAGTGGCCATCTTAAAAGGGTGTGACATGGGGCAGACAAGCACATGGTATGCACATACTATATAAAGGATATTTGTATAACAGAGTTTAATCCATCCTTCACACCTATGCAAAATCCAATTTTTGTAGCACATTGCTACAATTTTTGAAACAGACTCCTGTATCTCAGAATCCATAATGATACCTTGATTTAGATATTGAGCCTCCTAGAATGGATAATGTGGGTTACTTAGCGTTGGTAGCTACTGCGTATCATTAAGTGCATATAACTAAACTGTACTGCAGGTAAATTCATAAAATAAGGCTAGATTGATAGTTGTCTACCTGGATGATCATAAGAAATCATAAGTTGCTGCCTTGTTGAGAAGTTGTAAAGTTACAGTGCAAGTGAGTGTTCAAACCATGAATGTATTAGAAGTTCTTATAATGCAGTGGTTCAAAGGTCTGTTTATCCTGTAAATCAACAATCTGGGAATGTATTAGTGACATTGACAGATTAGTGACCACCACCCCGTGACGTAAGGACGCAAGAAGCGGGCGCATTGCATTGTGGTCACCGGTGCCTCGGAAACAGAAAGCAGTGGCGCCGCGCTCCATGGAACTACGCCAAGAGGCCTTAACATTCAGTCTACTCTGGACACAGTAAAAGTTCTGTAGTTGGTGAGCTTTGACCGCCTACAAAAGCAGCCATGTCGTCGACATCCCAAAAACATAGAGATTTTGTGGCCGAGCCCATGGGTGAAAAGCCTGTGATGGCTCTTGCAGGCATTGGAGAGGTCCTTGGCAAGAGACTGGAGGAAAaaggttttgacaagGCGTATGTCGTCCTCGGGCAGTTTCTAGTGCTAAAGAAAGACGAGGAGCTTTTCCGGGACTGGCTGAAGGACACTTGCGGGGCAAATGTCAAACAACAAGGTGACTGCTATGGCTGTCTTAAAGAATGGTGTGACGCCTTCTTATAAAGCATTCAGTCGTTGTTTTATACTTCTAAAGTCCAAACTGTACATTACATTTGTGATCTTGATTCAATTCAGCTACACCATATATATGAACTGACAAAGTCCACTCTAGGGAGAGTATTGAagtcaatttatttttaaattatacTTAAACCCCCCAAACTgaattcacacattacacacacaggtagCCCTTTTATGGTGGACATTTTAACTTGTCTGAGTAGTAAAAGTCCATTTCGGTCTACCAGTAAGTTTTATGTCATGTCACTGAGCCAGCATGCAAGTATCAGGGCTGTGACACAGGGACACCTaaatgtaatgcagcctttattAATGTTATGCTGTGAGAACCAACTATACAGGTGCCTCAGGCTAACACTGTTAGTTTCCAGTTTTGGGAAAAAGCGGCACATGTTCATAATATTAATGTTGTCCGACGTCATTGGAATATTGCATGTACCTTCTGCTAAAGGTTGAATTTTAAATGTCCATTTTCCATTGTTGGTCATGCACTGGGAATGTTTTTTAGCTAAAAATGGCTAGCTTGTTCTATGTTTAAACCTTATACCTTCAGACACATTTTGATGTTTCAGTTCAGCACccatttttctttctgtgtaACCTGATGATTTACCAGTACAATATTTGTACTCACCTGTCACTCTTGGGCTTCTTACCCCGTTTGCCTGTTTTTAAAGCCATtggaaagttgatgtaagctttttttttttttttttttaaatatataaatggcAAATCATATCAGTTTAGTATTATGTACTTTTGGTCCACCAACAATGTTTAAAAGAGGTGCATTGTCTGTTTGAACTGTCTTACAGCGGGTGTGACTGATTTATGTGACACAAAAACTAATCCTCAAAACTAATCCTACACTGTTTTAGcagaatatttttattttttacaaaaacttttTACTTTTGATCTCAAATAAAGAAACAACGTGGCCAGACCCCCACATATGGCctgctcaaagtttgtttgaACCCGAAGATGGAAAAGTATATGAATAAAGATGCCAATGCAACATTCTCAAACACTTTCAAAAACGTTTCAGTCTATTGCTGATTGCTGCAGCCTTTACATCCAATAATTTACTTACAAGTACAGGTATGTGTCTGCCAGATAAGCTAGCAGTAAACATACATTACAAACaattaggggtgtgcaaaaaaaatcgattcacattcgaatcgcgattcaagctctacagattcaaaatcgatttatagaattccaaaaatcaattcatattttttacgtgggaaaagtaactacatttacatactgtgaatcgttttttaaatcgagaatcgttttttgaatcgaatcttgagcctgaaaatcgatatcgaatcgtgacattttctgaattgtgCATCCCTCCAAACAATACATTTAGTGCCTGCTGGAAGTGCTGGGTGTAAAGAGAAATGAGTTGTGACAAGTATAACACATTCATATTGATGCAACGTGTTGGTGTGCTTAAGCAGCTACCAGGATGTAAGATTTTGATTAAACACTGTCCGAATTATATGACAGCCATCTAAGTCAAAACCCATGACGTGATACAGTAAACCAATCAGCACCCTGTTTGTCCCTAAGAGGCTAAAGTAGTTGATATGCTGTACTTGTATAATAGAATGTATTTAAAGCTTCAGTAGAAATTGACTTAGTTTAACAAGAGTGAGGTAAAACCCCATCCCTTTTCTTTACCTTCACAAAAAGATAAATCCATGGTCACGGTTTCCACTGGCTTAAATGAAGATGGAATACCACAGTATGTCCAGCACGGATGTATTTTGTAACACCAACAAGCCTGATTTAGGTCAGGTCTTCATAACTGAGCTTGAAATGATCTTGATGCCTTAATGCATGCTAGTTAAAGCATTTTATTTACTCAGATGAACTATAAAACCTGCAGTAACGCATGTCCAGGCTGTGTCACTTAATCTTCCACACACCACCTGCCACTTGAAGATGTAACCGATGTgtagcagctttttttttttttaaacactgccTGATGTGTTTGCATTTGACTGTGAAAACTTCAGTTTTGATATTGctcctatt

Function

symbol description
banf1 Predicted to enable DNA binding activity. Predicted to be involved in chromosome condensation and chromosome segregation. Predicted to be located in chromosome and nucleus. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in progeria. Orthologous to human BANF1 (BAF nuclear assembly factor 1).

NR:

description
PREDICTED: barrier-to-autointegration factor isoform X1

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K21870 BANF; barrier-to-autointegration factor

RNA

RNA id representative length rna type GC content exon number start site end site
TU229098 False 2409 lncRNA 0.39 3 26682809 26687174
XM_039777602.1 True 3771 mRNA 0.40 3 26681536 26687263

Neighbor

gene id symbol gene type direction distance location
prdx5 NA coding upstream 384 26677283 ~ 26681152 (+)
LOC120544052 kcnk4,LOC101470327,LOC104926336 coding upstream 27593 26640316 ~ 26653943 (+)
adssl LOC103133900,LOC102196784,LOC102782943,LOC103363363,LOC107082552,LOC100708095 coding upstream 43362 26626662 ~ 26638174 (+)
kif4 kif4a,LOC102783241 coding upstream 66513 26595941 ~ 26615023 (+)
gabra3 gabra3,LOC103133906,LOC103363372,LOC102292396,LOC101472157,LOC102198311 coding upstream 154692 26412161 ~ 26526844 (+)
cnih2 cnih2,LOC100706298,LOC107091387,LOC108276897 coding downstream 83935 26771198 ~ 26783324 (+)
LOC120544222 NA coding downstream 284057 26971320 ~ 26975490 (+)
LOC120543589 NA coding downstream 423442 27110705 ~ 27116039 (+)
aspa aspa coding downstream 429948 27117211 ~ 27131295 (+)
abr abr,LOC103375456 coding downstream 448754 27136017 ~ 27288433 (+)
LOC120544072 NA non-coding upstream 57030 26622770 ~ 26624506 (+)
G168940 LOC103376870 non-coding upstream 61763 26619525 ~ 26619773 (+)
G168889 NA non-coding upstream 68817 26574846 ~ 26612719 (+)
G168887 NA non-coding upstream 147505 26533731 ~ 26534031 (+)
G168885 NA non-coding upstream 151378 26527862 ~ 26530158 (+)
G168972 LOC104926337,LOC103394890,LOC103363373,LOC101166327,LOC105932178 non-coding downstream 19316 26706579 ~ 26706827 (+)
G168973 LOC103363373,LOC104958000,LOC104926337,LOC100697704,LOC102781095 non-coding downstream 19880 26707143 ~ 26708726 (+)
G169010 LOC106511527,LOC107091377,LOC100703904,LOC107386668,LOC101466262,LOC108233807 non-coding downstream 137340 26824603 ~ 26827050 (+)
G169011 LOC108233807,LOC100703904,LOC106511527,LOC101466262 non-coding downstream 139840 26827103 ~ 26829684 (+)
G169018 NA non-coding downstream 151729 26838992 ~ 26839557 (+)
esrra esrra,LOC103363365,LOC100707827,LOC104926321,LOC106534575 other upstream 5741 26659358 ~ 26675795 (+)
LOC120544064 tmem164 other upstream 113036 26543796 ~ 26568500 (+)
nlgn2b nlgn2b,LOC104920019,LOC101475673,LOC100709892,LOC102787387 other upstream 458091 26000063 ~ 26223445 (+)
LOC120543603 LOC103357742,LOC104968170 other upstream 789005 25868154 ~ 25892531 (+)
LOC120575613 LOC103357740,LOC104968174 other upstream 835159 25839404 ~ 25846377 (+)
G169042 stip1 other downstream 274943 26962206 ~ 26965040 (+)
shpk shpk,LOC102781293 other downstream 832768 27520031 ~ 27531315 (+)
ftr82 LOC104966639,LOC103359483,LOC104933521,LOC108233798,LOC106511051 other downstream 2109249 28796512 ~ 28802885 (+)
LOC120544198 vmp1 other downstream 2194471 28881734 ~ 28942332 (+)
G169789 map6 other downstream 3258611 29945874 ~ 29971107 (+)

Expression


Co-expression Network