ftr82 (LOC104966639,LOC103359483,LOC104933521,LOC108233798,LOC106511051)


Basic Information

Item Value
gene id ftr82
gene name LOC104966639,LOC103359483,LOC104933521,LOC108233798,LOC106511051
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 28796512 ~ 28802885 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU229941
TATTAGATTAGAAATAATAGCTCTACATGATATGAATTTAAATGAGAAGACAGAGCTAATTGTTTGATTCCTTTTATTGTTTGTGCTTTCACAAATGCACGTtctaaaacatttcaaaagtaCCTGTATCAGGGATATCATTTGAACTTTGAAAGATTTAACTGGAATGTGAACCTTTCAATgtatacacacattcacacgtaTCTGTGACTAACCAGAACACCTGCTCTGAAACAGATGACAGCACCAAGACTTCTTAAGCACAGACGATACTAACAGCCCCCTCTGTTGGCTGACTACaggaactgaactgaactgaactgaactgaaagaaaaatgacCAGTGGCTATAGGTATGATCATCATTACAGTCGCtgagttgaatcaacacctctgcAGTTTCAACAACATCTGTACATTATAATCTTCATGAAGGGAGGATTTAATGCAGGACTGATGTATTGGACAGTTTTAGTTAGGGACACCTAATAAACAACTGAGACTAACTAAGTGATAATTGTTAGCCTACTCTTAACAGTCACAGCTGCACAGAACAAACACACTATTCTGGACTTTGTCCTGCAGCTCCAGTTCAAAACTCCAAAAGAAAAAGTACCTCTAGCTCAGTGTGCGCACCATGCATGTAAGTCTTCCCCC
>XM_039778283.1
GCTTATCTGAACTGGGCAGGGCTCGATATACTCACAGCACAGGGGGACGGCCTTGTCTGCTTTCAATCAATAACCTCTGGAATTCAGAAATACAAGTCGGTCCTGTCTCTGGCAGGCTGTACCTAACTCTTTTGGGCGGGATCCCAGGCACACTCAACGGAATTTCTATCAGCTCCtggctctctctgtctgttttcgCAGATCTGACTGCGCTTTGAGCCCTATCACAATGGCTGATCACACTTCTCCAGACTATTTCAGCTGCTCCCTGTGTGTGAACCTGCTGAGGGACCCTGTTGCTATCCCCTGTGGCCACAGTTTCTGTATGGACTGCATCAGTGGTTACTGGAATGAGGCGGACTACACAGGGATTTACATTTGTCCCCAGTGTAAGATCACATTCACCCAGAGGCCGGTGCTGCGGCCCAACGCCACTCTGAGCATGGTGGCTGAGAAGATCAAGAAGAGCGGTCTGAACCTCAACATCAACTTTCCCCAGGGGAACTTCTGCGCCGGACCAAGTGACGTCCCCTGTGACTTCTGCTCTGGGAAGAAATTAAAGGCTGTGAAGTCCTGTCTTAACTGCCTGGCGTCCTACTGCGAGAAGCACCTGAAGCCACACTACGAGTCAGCCACATTCAAAAGGCACAAGCTGGTGGACGAGCTGGGAAACCTGGACAGGAAGATCTGCCCGCAGCACCAAAAGCCCCTGGAGCTCTTCTGTCGAACAGATCAGATGTGTATCTGCGCTATCTGCACAGTCAGTGAACACAAGGGCCATGACATTGTTTCTGCTGAGGCAGAGAGGGGTGAGAAACAGAAACTCCTGGGAGTCTCCCAGGCTGAGATTAGACAAAAATGCCAGGACAGGGTGAAGGAGCTGGAGGAACTGAAGACTGCTGTGGATTCATTGAAGAACTCGGCCCAGAGAGCCATGGTGGACAGCCAGAAGATGTTTGAGGACATGATCCGCTCCATTGAGAGGATGAGGTCAGAGGTGACCAAGCTGATTGGTATCAACGAGAAGGCTGCTTTCAACCAGTCCGAGGCTTTGATCGAGCGGCTGGAACAAGAGATCGATGAACTGAAGAAAAAGGAGACCGGCCTCAAGCAGCTGTACAGCACTGAGGACCACATCCACTTCCTGCAGAACTTCAACTACCTCTGCACCCCCACTGATGACGGCTTCATACCGAAAGTGGTGCTGAACCCTGACTTCTCCTTCGGGGCTGTTAGGAAAGCTGTGAGCGAGATCAAGGAACGCCTGGAGGAGTTTGGCAAAGAGGAGCTGCTTAAGATCTCCAAGTCAGTGAACGAGGTCCCAGTGTACACTACGGAGAGTCGAACATTGGACAGAAGGAGCAGAGGCAAAGAAATGGTGGACAACACTCCTCCAGAGCCGAAGACCAGAGCCGATTTTGTAAAATACTTCTGCCAGCTGAAACTGGACTCTAGCACAGCCTACAAGGAGCTGCACGTCTCAGACAACAACAGAAAAGTCATCCGCACCAGGGACCTGCAGCCCTACGGAGACAACCCAGAGAGGTTTGACAGTTTTGCCCAGGTGCTGTGCCGGGAGGCCCTGTACGGGGGCCGCTTCTACTGGGAGATCGAGTGGAGCGGGGAGTTCTCCATTGGAGTGGCCTACAAGAGCATCAGCCGGAAGGGCAAAGGCTCACTGTGTCTGCTGGGATACAACGACAAATCCTGGAGCCTGCTCTGCTCTGACACGGGTTACTCTGCCTGGCACAACCGGGTGGACAAAGCTGTCAGCGGCCCCCACTCCCCCAGAATAGGCGTGTACCTGGACCACAGTGCTGGTGTGCTGGCATTTTACAGCATAGGCAACACCATGACCCTCCTGCACAGGTTTCAGACTACATTTGTTGAGCCTATCTATCCAGGCTTTGGAGTTGGAACCTCAGTCAGGATCTGTAATATCAAGTGAACACCCGTATTTAAGCTCTCAAGTTTGAAAATCTGGAAATATTTTCCACATGTTACTCATAATACACAGCAATGGTTttggaatatatatttttgctaaTTTTTTAAACTGTACCAAaccacattgttttttttttttgttttttttaaatgcacccCACCCCCCAATGTGTATAGACTACATATTTTTTAACACTACACATCACATAttacgttttgcattgttttgtCAAAATACATTGTCACTGtagttttataaaaacattattgAAATACATAATTACTACATAATCACACAAGTACAATATAAAGTGTTATCACTTCTGGATCATAACTTCTGGATAATATTATGACATGTCACTATGTGAAAAACGTGAGCTACACCTGTGTTCTCACAGATGCATTaatttcataaaataaaaaatgtacccTGGGATAACCTAAGATCATTATATGAGGTCATTACATTGTTAGCCAATAGTATTGcatagttcatttaaaatatattgctCCCTTATGATCTTTATGACTAATACAGTAACATTCACATTGGTGCATTAACAGGTATTATTATGGTTTCAACACATTCAAAGGAATATTTCATTGTCGCttcattttgtcatgttttgaTATTATGTGATAGTTGTCATCAgttgctgagtttttttttcacttgaacTAACCCctattatttaatttgtatGTAGGTTTACTTATataaaaaacagaatataaTTGATATCAAGAAAAGACTGTTTTTGTAACAAAATTATTTTATCGATAGTTCTAAATAAAGAGCTATGTGAACGAAtagatttttgtgtttttgagatTATTTATCTATTTCTACATTATAACATAAGGACCAGATGTTGTTGTATCTATATTGCCAAATTAAAGGTTTATTAGATTAGAAATAATAGCTCTACATGATATGAATTTAAATGAGAAGACAGAGCTAATTGTTTGATTCCTTTTATTGTTTGTGCTTTCACAAATGCACGTtctaaaacatttcaaaagtaCCTGTATCAGGGATATCATTTGAACTTTGAAAGATTTAACTGGAATGTGAACCTTTCAATgtatacacacattcacacgtaTCTGTGACTAACCAGAACACCTGCTCTGAAACAGATGACAGCACCAAGACTTCTTAAGCACAGACGATACTAACAGCCCCCTCTGTTGGCTGACTACaggaactgaactgaactgaactgaactgaaagaaaaatgacCAGTGGCTATAGGTATGATCATCATTACAGTCGCtgagttgaatcaacacctctgcAGTTTCAACAACATCTGTACATTATAATCTTCATGAAGGGAGGATTTAATGCAGGACTGATGTATTGGACAGTTTTAGTTAGGGACACCTAATAAACAACTGAGACTAA

Function

NR:

description
tripartite motif-containing protein 16-like

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10652 TRIM25, EFP; tripartite motif-containing protein 25

RNA

RNA id representative length rna type GC content exon number start site end site
TU229941 False 657 lncRNA 0.39 1 28802229 28802885
XM_039778283.1 True 3356 mRNA 0.44 7 28796512 28802734

Neighbor

gene id symbol gene type direction distance location
spns2 spns2 coding upstream 45976 28689558 ~ 28750536 (+)
spns3 NA coding upstream 119332 28670127 ~ 28677180 (+)
LOC120575697 LOC103372553,LOC104967633 coding upstream 159995 28633009 ~ 28636517 (+)
p2rx1 p2rx1 coding upstream 401062 28374490 ~ 28395450 (+)
ywhag1 143g1,LOC101156793,LOC108233911,LOC107387033,LOC103041195,LOC103395178 coding upstream 598849 28179027 ~ 28197663 (+)
cltca cltc coding downstream 28066 28830951 ~ 28874169 (+)
rps6kb1a rps6kb1,LOC103359476,LOC103395203 coding downstream 150330 28953215 ~ 28971259 (+)
med13a med13 coding downstream 218289 29021174 ~ 29122883 (+)
ints2 ints2 coding downstream 321481 29124366 ~ 29149786 (+)
auts2a auts2 coding downstream 514657 29317542 ~ 29683489 (+)
G169540 NA non-coding upstream 17847 28774831 ~ 28778665 (+)
G169536 NA non-coding upstream 37262 28758136 ~ 28759250 (+)
G169534 NA non-coding upstream 43757 28751798 ~ 28752755 (+)
G169532 NA non-coding upstream 45213 28750612 ~ 28751299 (+)
G169431 NA non-coding upstream 316356 28475910 ~ 28480156 (+)
G169561 atp5l,LOC102215954,LOC102793421,LOC100709019 non-coding downstream 1498 28804383 ~ 28808679 (+)
G169564 NA non-coding downstream 6717 28809602 ~ 28809829 (+)
G169574 NA non-coding downstream 103375 28906260 ~ 28907156 (+)
G169581 NA non-coding downstream 134686 28937571 ~ 28946192 (+)
G169594 NA non-coding downstream 139777 28942662 ~ 28944321 (+)
shpk shpk,LOC102781293 other upstream 1265197 27520031 ~ 27531315 (+)
G169042 stip1 other upstream 1831472 26962206 ~ 26965040 (+)
banf1 banf1,LOC106523121,LOC104926323,LOC108233898 other upstream 2109249 26681536 ~ 26687263 (+)
esrra esrra,LOC103363365,LOC100707827,LOC104926321,LOC106534575 other upstream 2120717 26659358 ~ 26675795 (+)
LOC120544064 tmem164 other upstream 2228012 26543796 ~ 26568500 (+)
LOC120544198 vmp1 other downstream 78849 28881734 ~ 28942332 (+)
G169789 map6 other downstream 1142989 29945874 ~ 29971107 (+)
uvrag uvrag other downstream 1208448 30011333 ~ 30113690 (+)
G169814 NA other downstream 1325647 30128532 ~ 30128932 (+)
pcp4a NA other downstream 1671566 30474451 ~ 30502597 (+)

Expression


Co-expression Network