rom1a (LOC108233807,LOC106511527,LOC100703904,LOC107091377,LOC101466262)


Basic Information

Item Value
gene id rom1a
gene name LOC108233807,LOC106511527,LOC100703904,LOC107091377,LOC101466262
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 26824578 ~ 26829744 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777590.1
CATTAGTGGTAAGAAGCTCCCTGCATCCAGGTTGGCCAAATCCAGTGTGCCAAATCCACTGTGTGGCACACTGGACGGTACATAGTGGTCAGTGGAGATAACTGGacttttttcagcactttttggCGAGACAAATAAGACAAAGCACAGCATCGGCCCCCGTTCCTCATCGCTCTCCTTCCCCTATTCCCCCGCTAAGACTCGGATTCCCTCGTTGCAACCATGgtggtgatgaagatgaagTTCCCCTTTCAGAAAAGGGTGAAGCTAGCCCAGGGACTGTGGCTCCTCTCCTGGTGTGCCACAGTTGCCGGGGCTATCACCTTCACCCTGGGCTGTATCCTCAAGACGGAGCTCCGCAGGAGGGCAGAGGTAATGGATAACTCGGACATACATGTTGTGCCCAATACCCTCATGATTGTTGGTCTGGCCTCCTTGGGTATCAACTACTTTTCTTCAAAGATCTGTCAGGATGCTTTGGATGCCGGACGATTTCCTCGCTGGAAGAAAATGTTAAAGCCCTATTTCGCTGTCTCTTGCTTCTTCACTGTGCTCATGCTGCTCGCTGTCATCATGAGCTTTGCAATGAAGGGCAGTCTGGAGTCCTCTCTGAAGGTTGGCCTGAGGAACGGCATCCGCTTCTACAAGGACACAGACACCCCAGGCCGCTGCTTCCAGAAACAGAACATCGATCGCCTGCAGATGGACTTCCAGTGTTGTGGAAATAATGACTTCAGGGACTGGTTTGAGGTCCAGTGGATCAGCAACCGCTACCTTGATTTCAGCTCTAAGGAAGTCAAAGACCGCATCAAGAGCAACGTGGATGGTCGTTACTTGTTAGATGGAGTCCCATTCAGTTGCTGCAACCCCAGCTCTCCACGGCCATGCATCCAGTTTCACCTCACCAACAACTCAGCTCACTATAACTATGATTACCAAACCGAGGAGCTCAACATCTACCTCCGAGGCTGCAGAGAGGCCCTGGTCCACTACTACATGGGCCTGATGAACGCCATTGGGGCTGGAGTACTGTCAGTCTTCCTCTTACAGGCCTCTGTGCTGGTGAGCTTGCGGTTCCTGCAGACCTCCATGGAGGCAGTGGCAGGGAATGAAAACACAGAGATTGAGACAGAAGGGTACTTGCTGGAGAAACCATTGAAAGAGACCATCATGGAATATGTCGAACCTGTGATGAAGTTCTTCCTGCTTACAAACCAGGTCGAAGAGGGTACTCCTGGAGCCCCAGCTTCAACTTAAACCACAAATAATGTACACTCATGTAAATACTTTTTACACAGAGAAGGCAACTAATGAAtgataattaattatttaaatttgaaaaatattaaTCACACATTTCTATGAATTTCACAGATTTAGGGATAGTATTTTTCATTGTCAGATGACCATCACTGGTAAAGTAAATGTTTATTATAATACTGTACTTTCCCATTATAATACTGTACTAAATTTGATATGCTGTTATACCCCCTCTGTAAACCACATACTGAATAACATAAGAAAAGATGATTTTTATCGTTTTTGTCAATACCCCAAACTCGATTATTTctcattccttttttttctttttttctttattgttaTATTTGTTAACAGTTCCACAAATTTACAAAATCACTTCACTGCTTTGGAATGCAGTGCAGTGCATGACATGCATTGCTAATTAATTCTCAAGAGTCTGTGTCAAAAGCAGTAACAACAATCACCAATCAGTTATTTGGAAAACAGTAATTCACGAGGCAATGTACAAAAATAATTTTTGATCTTACAAAACAAGGATGTAAAGCTGATTGTAGAGAGACACGAGGCACAATGCTCTGCTGTGCAACAGGACTATTACATAATATAACAGATACATTATTAAAGTTTGAGGTTACTAATTGCCTTATGGGGTGGAGTCACgtattgcttcttttttttctaatgaCATGCAGACATTATAACATTTCAGATATCATACTCCATAACAAGTGCTCCAAGTTGCTAATATCTCCTTGCCTCTCTTCTCCCTGTCAGTGAAAGGAATAGGATTATGAAGATTGATATAATCAAAGTCAGTAATGCAGTGAAAGCCATCAAGTGTGTCCTCTGTTCTGACACCTTTGTTAAATCTTTTAATCCCATTTGTTAATACTCAACCTGCTGCCCTTGCATTTAGACACCTGCGTCAGGTGAATGTAAGATGCAGAGTGAAATATGCCAAGGCTTTTTTCTGCTAATGGAAATGTactgaaaatatataatattagtgATATAACTTCAAACTTGGATGAAGAATTTGTGTTCTTTACCAATGTCCCTGAGCAGTTCATTAAATATGCAAGAGAAATATTCTACAATCTCTCTGTTACCAAAAACTAAATATTGGTTAATCTCTGGAATCTATTTGTAATATCCACCCATGTGAATAGCTTTATTAAAGGTTGTTTTAAAAACA

Function

NR:

description
PREDICTED: peripherin-2-like isoform X1

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777590.1 True 2458 mRNA 0.42 5 26824578 26829744

Neighbor

gene id symbol gene type direction distance location
frmd8 frmd8,LOC102779292 coding downstream 1386 26812205 ~ 26823192 (-)
vps51 vps51 coding downstream 16664 26802257 ~ 26807914 (-)
tm7sf2 tm7sf2,LOC102779860 coding downstream 22829 26787408 ~ 26801749 (-)
slc8a4a LOC103363370 coding downstream 64590 26735442 ~ 26759988 (-)
si:dkey-175m17.7 LOC103363373,LOC104926337,LOC104958000,LOC102781095,LOC101468104,LOC102297217 coding downstream 103174 26702955 ~ 26721404 (-)
si:dkey-273o13.3 NA coding upstream 2033 26831777 ~ 26841834 (-)
zfpl1 zfpl1,LOC102778161 coding upstream 13930 26843674 ~ 26848132 (-)
rps6ka4 LOC103360356,LOC100695849 coding upstream 114677 26944421 ~ 26957171 (-)
stip1 stip1 coding upstream 129793 26959537 ~ 26967998 (-)
LOC120543912 LOC101488131,LOC102213336,LOC105418249,LOC102076382 coding upstream 145918 26975662 ~ 27081579 (-)
G168966 NA non-coding downstream 135753 26687379 ~ 26688825 (-)
G168963 NA non-coding downstream 143436 26677263 ~ 26681142 (-)
G168928 NA non-coding downstream 226944 26595893 ~ 26597634 (-)
G168907 NA non-coding downstream 292079 26529707 ~ 26532499 (-)
G168876 NA non-coding downstream 541396 26282854 ~ 26283182 (-)
LOC120543914 NA non-coding upstream 223302 27053046 ~ 27056568 (-)
G169118 NA non-coding upstream 419071 27248815 ~ 27288981 (-)
G169119 abr non-coding upstream 443819 27273563 ~ 27284502 (-)
G169149 NA non-coding upstream 538465 27368209 ~ 27368910 (-)
G169173 NA non-coding upstream 595409 27425153 ~ 27426317 (-)
gng3 gng3,LOC107559409 other downstream 131537 26688879 ~ 26693041 (-)
G168964 NA other downstream 139622 26681514 ~ 26684956 (-)
ammecr1 ammecr1 other downstream 211861 26574929 ~ 26612717 (-)
vamp2 vamp2,mpp1,LOC103367795,LOC104941032,LOC107742350,LOC107720682,LOC107082578,LOC107386619 other downstream 588384 26224819 ~ 26236194 (-)
pcdh1a LOC103357738,LOC108233889,LOC101479736,LOC102299879 other downstream 1101360 25623735 ~ 25723218 (-)
flrt1a flrt1,LOC104926332,LOC103360355 other upstream 40806 26870550 ~ 26941207 (-)
emc6 emc6 other upstream 686146 27515890 ~ 27519001 (-)
pigw pigw,LOC107090330,LOC102785725,LOC102220786 other upstream 838937 27668681 ~ 27701551 (-)
gusb gusb other upstream 889255 27718999 ~ 27746458 (-)
LOC120544024 rnf43 other upstream 1100795 27930539 ~ 28027777 (-)

Expression


Co-expression Network