frmd8 (frmd8,LOC102779292)


Basic Information

Item Value
gene id frmd8
gene name frmd8,LOC102779292
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 26812205 ~ 26823192 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777582.1
AGACAACTGGCTAGCCGTAGAGCCATGTCTTTCTCTATAACTCTGGCTAGCCGTAGCCAGGGCGGAGAATAACAGCGAATCGTagattagctagctactgtAACGTTATTTACAAAATTAGCTTTCCCATTCAGTGTGTAATCAGCAAGTGGAGGGAAATTCACCAAAACTGGCAGAGTAGAGATGGAAGGAGATGACTGCAATTTTCCTCCAGATTCATCGGATGATCACTCGCAAAGAGGAAGCGTTGCTTCTTCCGCAACACTTTCCCGTGCTCAAGATGTGCTTATATACCTCTGTGGTGACAGCGCAGTGCACTTATCAGTAGAAGGGCTTGGCAGTGTCTCTGTGCAGGAGTTGGGCCGCAGTGTTCGTGAGGCTCTCCATATTCCTGAGTCTGCACAGGATGCTTTTGCCTTCTGGCTTTCTTCTCCACTACTCGAATTGCAGTTAAAGCTAAGGCATCAACCATACAAACTGTGTCGGCAGTGGCAGGACTTGCTCTATCGCTTCACTGAGGCCTCAGAGGAAGACATCTCACAAGATGAACCATGTCTCCAGTACCGTCGGAATGTGTTTTATCCTAAAGCGAAAGAGCTGCAGATAGATGATGAGGGAGTGCTGAGGCTCCTGTATGAGGAGGCCAGGGACAGAGTTCTCACTGGTCGATACCCCTGCGACCCTGAGCACTGGACAGCTCTCGGAGCCTTGTCTCTTGCTCTTGATGAGGGAACTGCTCTGGACGGGCAACAATTTACTACTACTATCAGAGAGAAGAAGCTGTCTTCGTTTCTGCCGGTACATGTTGTCATGGGGAGTGGAGGTTTGTTCTCCACTCTGAGAGGGAAGTCGAGCCGTCAGACAGGGCTGGAGCAGAACCTCTTGGAGGAATACAGAAAGATCAGCACATTTGCTGGAAACTCTCCGGAGCCCACACAGCTCCTACACCAGTACCTCAACACATGTCACACTCTGCCTTATTATGGGTGCGCCTTCTTCGTTGGGGAGATTGACAAACCAGCGCAAGGGATTCTCCAAAGGGCCAAACGCAAAGCTGTCAACGTTGGGATCTGCCTGGAGGGAGTTTATGTGATGGATGTCAAAGAGAAGCATGTGCTGCTTGGCCTGCAATTCAATGAGCTTTCCTGGGACCACAGCTACCCTGAGGAGCAGGGGGACTCGCATATTCTGTGGCTCGAGTTTGATGGCGATGAAGACGGCACTCCTGTTAACAAGTTGCTAAAGATCTACTCAAAACAGGCAGAGCTAATGAGCGGCTTCATTGAGTTCTGTGTGGAGCTGAAGTCTGCGTCTGAGGGAGGGGCTGCCGCCGAAATGGACGGTGAGGTGAGTCTGTCTCAGCAGCCTGCTGGGCCAGACGGCAGCAGCAAGAACGGACGCGGAGGACGGCGCGGCGTGCTGCACAGGCAAAGCAGTGTTCTGTGCAGTCGGGTCCATTCACTTAACACTATCAGCTACGTGGACAATGGAAAAGAAATCAAACGCTTGAAGCCGAAAAGAGCCGCGTCCTTCTTCACCCGCCAGGCGTCTACGTACTCTGCTGTGCAAGTGACGGAGAGTCTGGAGCAGAGTTAAACCCACTGATCATGCCTCTAAAAGACCAAACCTGAACATTTAAAGAAAAGACTTGAAACGAGCTTGAGACATTCAACTGATAATATATGAACATGCAAAGGACCAAGCGAGAAGTGTGAGTGACAATATTTATCTTTTGAAGTTGTGTATATTAAGACAGTACAGTAATGTGATAAACAAAATGATCTATTAACCGCTATGTTTTCAAGGTTTCACTGAAGTGGCTATTCATTAGATAgccttacataaaaaaaacaccatctgATGGACATCTTTCATGAAACAAGCCTTAGAGAAATCCTCAGACAACCACTCCAATTGATGACTGTATGATGACCGTTCTGACCTTTCTGCAGCGCTCAGTAGTGTGTTTACTggtttttacttaaaaatgttgAACCTCATTAGAGTAGAACCACTGCATTACCTCTTTTTACCCTTATTGGCGGGTTGAACATCAAGAA
>XM_039777583.1
AGACAACTGGCTAGCCGTAGAGCCATGTCTTTCTCTATAACTCTGGCTAGCCGTAGCCAGGGCGGAGAATAACAGCGAATCGTagattagctagctactgtAACGTTATTTACAAAATTAGCTTTCCCATTCAGTGTGTAATCAGCAAGTGGAGGGAAATTCACCAAAACTGGCAGAGATGGAAGGAGATGACTGCAATTTTCCTCCAGATTCATCGGATGATCACTCGCAAAGAGGAAGCGTTGCTTCTTCCGCAACACTTTCCCGTGCTCAAGATGTGCTTATATACCTCTGTGGTGACAGCGCAGTGCACTTATCAGTAGAAGGGCTTGGCAGTGTCTCTGTGCAGGAGTTGGGCCGCAGTGTTCGTGAGGCTCTCCATATTCCTGAGTCTGCACAGGATGCTTTTGCCTTCTGGCTTTCTTCTCCACTACTCGAATTGCAGTTAAAGCTAAGGCATCAACCATACAAACTGTGTCGGCAGTGGCAGGACTTGCTCTATCGCTTCACTGAGGCCTCAGAGGAAGACATCTCACAAGATGAACCATGTCTCCAGTACCGTCGGAATGTGTTTTATCCTAAAGCGAAAGAGCTGCAGATAGATGATGAGGGAGTGCTGAGGCTCCTGTATGAGGAGGCCAGGGACAGAGTTCTCACTGGTCGATACCCCTGCGACCCTGAGCACTGGACAGCTCTCGGAGCCTTGTCTCTTGCTCTTGATGAGGGAACTGCTCTGGACGGGCAACAATTTACTACTACTATCAGAGAGAAGAAGCTGTCTTCGTTTCTGCCGGTACATGTTGTCATGGGGAGTGGAGGTTTGTTCTCCACTCTGAGAGGGAAGTCGAGCCGTCAGACAGGGCTGGAGCAGAACCTCTTGGAGGAATACAGAAAGATCAGCACATTTGCTGGAAACTCTCCGGAGCCCACACAGCTCCTACACCAGTACCTCAACACATGTCACACTCTGCCTTATTATGGGTGCGCCTTCTTCGTTGGGGAGATTGACAAACCAGCGCAAGGGATTCTCCAAAGGGCCAAACGCAAAGCTGTCAACGTTGGGATCTGCCTGGAGGGAGTTTATGTGATGGATGTCAAAGAGAAGCATGTGCTGCTTGGCCTGCAATTCAATGAGCTTTCCTGGGACCACAGCTACCCTGAGGAGCAGGGGGACTCGCATATTCTGTGGCTCGAGTTTGATGGCGATGAAGACGGCACTCCTGTTAACAAGTTGCTAAAGATCTACTCAAAACAGGCAGAGCTAATGAGCGGCTTCATTGAGTTCTGTGTGGAGCTGAAGTCTGCGTCTGAGGGAGGGGCTGCCGCCGAAATGGACGGTGAGGTGAGTCTGTCTCAGCAGCCTGCTGGGCCAGACGGCAGCAGCAAGAACGGACGCGGAGGACGGCGCGGCGTGCTGCACAGGCAAAGCAGTGTTCTGTGCAGTCGGGTCCATTCACTTAACACTATCAGCTACGTGGACAATGGAAAAGAAATCAAACGCTTGAAGCCGAAAAGAGCCGCGTCCTTCTTCACCCGCCAGGCGTCTACGTACTCTGCTGTGCAAGTGACGGAGAGTCTGGAGCAGAGTTAAACCCACTGATCATGCCTCTAAAAGACCAAACCTGAACATTTAAAGAAAAGACTTGAAACGAGCTTGAGACATTCAACTGATAATATATGAACATGCAAAGGACCAAGCGAGAAGTGTGAGTGACAATATTTATCTTTTGAAGTTGTGTATATTAAGACAGTACAGTAATGTGATAAACAAAATGATCTATTAACCGCTATGTTTTCAAGGTTTCACTGAAGTGGCTATTCATTAGATAgccttacataaaaaaaacaccatctgATGGACATCTTTCATGAAACAAGCCTTAGAGAAATCCTCAGACAACCACTCCAATTGATGACTGTATGATGACCGTTCTGACCTTTCTGCAGCGCTCAGTAGTGTGTTTACTggtttttacttaaaaatgttgAACCTCATTAGAGTAGAACCACTGCATTACCTCTTTTTACCCTTATTGGCGGGTTGAACATCAAGAA

Function

symbol description
frmd8 Acts upstream of or within anterior/posterior pattern specification; negative regulation of Wnt signaling pathway; and regulation of canonical Wnt signaling pathway. Predicted to be located in cytoskeleton; cytosol; and membrane. Predicted to be active in plasma membrane. Is expressed in otic vesicle and post-vent region. Orthologous to several human genes including FRMD8 (FERM domain containing 8).

NR:

description
PREDICTED: FERM domain-containing protein 8 isoform X1

GO:

id name namespace
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060828 regulation of canonical Wnt signaling pathway biological_process
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K23972 FRMD8; FERM domain-containing protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777582.1 True 2060 mRNA 0.48 11 26812205 26823192
XM_039777583.1 False 2055 mRNA 0.48 11 26812205 26823192

Neighbor

gene id symbol gene type direction distance location
vps51 vps51 coding downstream 4291 26802257 ~ 26807914 (-)
tm7sf2 tm7sf2,LOC102779860 coding downstream 10456 26787408 ~ 26801749 (-)
slc8a4a LOC103363370 coding downstream 52217 26735442 ~ 26759988 (-)
si:dkey-175m17.7 LOC103363373,LOC104926337,LOC104958000,LOC102781095,LOC101468104,LOC102297217 coding downstream 90801 26702955 ~ 26721404 (-)
gabrb4 LOC107386622,LOC101472660,LOC103367791,LOC103394735,LOC103133907,LOC106949245,LOC107571379,LOC106523114,LOC107713123 coding downstream 278164 26297439 ~ 26534041 (-)
rom1a LOC108233807,LOC106511527,LOC100703904,LOC107091377,LOC101466262 coding upstream 1386 26824578 ~ 26829744 (-)
si:dkey-273o13.3 NA coding upstream 8585 26831777 ~ 26841834 (-)
zfpl1 zfpl1,LOC102778161 coding upstream 20482 26843674 ~ 26848132 (-)
rps6ka4 LOC103360356,LOC100695849 coding upstream 121229 26944421 ~ 26957171 (-)
stip1 stip1 coding upstream 136345 26959537 ~ 26967998 (-)
G168966 NA non-coding downstream 123380 26687379 ~ 26688825 (-)
G168963 NA non-coding downstream 131063 26677263 ~ 26681142 (-)
G168928 NA non-coding downstream 214571 26595893 ~ 26597634 (-)
G168907 NA non-coding downstream 279706 26529707 ~ 26532499 (-)
G168876 NA non-coding downstream 529023 26282854 ~ 26283182 (-)
LOC120543914 NA non-coding upstream 229854 27053046 ~ 27056568 (-)
G169118 NA non-coding upstream 425623 27248815 ~ 27288981 (-)
G169119 abr non-coding upstream 450371 27273563 ~ 27284502 (-)
G169149 NA non-coding upstream 545017 27368209 ~ 27368910 (-)
G169173 NA non-coding upstream 601961 27425153 ~ 27426317 (-)
gng3 gng3,LOC107559409 other downstream 119164 26688879 ~ 26693041 (-)
G168964 NA other downstream 127249 26681514 ~ 26684956 (-)
ammecr1 ammecr1 other downstream 199488 26574929 ~ 26612717 (-)
vamp2 vamp2,mpp1,LOC103367795,LOC104941032,LOC107742350,LOC107720682,LOC107082578,LOC107386619 other downstream 576011 26224819 ~ 26236194 (-)
pcdh1a LOC103357738,LOC108233889,LOC101479736,LOC102299879 other downstream 1088987 25623735 ~ 25723218 (-)
flrt1a flrt1,LOC104926332,LOC103360355 other upstream 47358 26870550 ~ 26941207 (-)
emc6 emc6 other upstream 692698 27515890 ~ 27519001 (-)
pigw pigw,LOC107090330,LOC102785725,LOC102220786 other upstream 845489 27668681 ~ 27701551 (-)
gusb gusb other upstream 895807 27718999 ~ 27746458 (-)
LOC120544024 rnf43 other upstream 1107347 27930539 ~ 28027777 (-)

Expression


Co-expression Network