gabrb4 (LOC107386622,LOC101472660,LOC103367791,LOC103394735,LOC103133907,LOC106949245,LOC107571379,LOC106523114,LOC107713123)


Basic Information

Item Value
gene id gabrb4
gene name LOC107386622,LOC101472660,LOC103367791,LOC103394735,LOC103133907,LOC106949245,LOC107571379,LOC106523114,LOC107713123
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 26297439 ~ 26534041 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039777576.1
actactactgctgctgctatgtTAGCGCTAATTGGCAAAAAAAAGCTCACCTGCAGCCAAGTATGCATTCAGGAGGACTTTGTGAAGGAGTATCCATGTTTGGCTGCACTCCTAGCTGGACTTTAAACATTCTTCATCATGCTGCATTTGTCACCTGTCGGCCTCAAACACGAACTTGAAGCTGGAAGTGGAGTTTCCTGTCTGCAGCCTGGGACCCATGGGACCACAGTGACTCTTCACAAAAGACTTTCTTCATTCTTATTCACTCTTGCCAAGACACCGAGGATGACCGCTTCACCTCAGCAAGCTAGCTCTTCCACTGGAAGCACCGGAATGTCTGTGGCCAAGACCACCGTGGACAAGTTGCTGAAGGGATATGACATCCGTTTAAGGCCTGATTTTGGAGGTCCTCCAGTCATCGTAGGAATGAGCATCAACATAGCGAGCATCGACTCCATCTCAGAAGTAAACATGGACTACACCATCACTATGTATTTCCAGCAGAGCTGGCGAGATAAGCGTTTGGCCTATGGTGAGCTGAAGCTAAACTTGACTCTGGACAACCGTGTAGCAGACCAGCTTTGGCTCCCTGACACCTACTTCCTAAATGACAAGAAGTCCTTTCTTCATGGTGTGACAGTAAAAAACCGTATGATCCGACTGCACCCAGATGGCACTGTCTTATACGGGCTGAGaATAACCACCACTGCAGCTTGCATGATGGACTTGAGGAGGTACCCTCTTGATGAACAGAACTGCACCCTGGAAATTGAAAGTTATGGATATACCACAGATGACATCGTATTCTTCTGGCAAGGAGGAGACAGCGCCGTGACGGGCGTTGACAAGTTGGAGTTACCTCAGTTTTCCATTGTAGAACTCCGCTTGGTATCCAGGGAGGTCAGGTTTACTACAGGTTCATATCCAAGGCTTTCGCTGAGTTTCAGGATTAAGAGGAACATTGGATATTTCATCCTGCAAACATACATGCCCTCCATCTTGATCACCATCCTCTCCTGGGTCTCCTTCTGGATCAATTATGATGCCTCTGCAGCTCGGGTGGCCCTGGGTGTGACAACGGTGCTTACCATGACAACAATTAACACCCACCTTAGGGAGACTCTCCCAAAGATTCCGTATGTGAAAGCCATCGACGTCTACCTCATGggctgttttgtgtttgtgttcctgGCCCTGCTCGAATATGCCTTTGTAAATTACGTGTTCTTTGGCCGGGGCCCTGCGCAACAGAAGAAAATCAATGAGAGGCTGAACAAAGCCAACAACGAGCGCACAAGATACGAAGAGAAGCGCCTGAGGGAACAGGACTCCATTTCCGTGCCGTTTCAAACCAACACCTTCAGGTCATTTACACAGCGAAGAAATCTGTATCTCGAGGAACAAAGAAAAGTTGGGGTGGATGCTTATGGAAACATCCTCCTCACCACACTGGAGATGAACAACGAAGTGATGCCTTCAGACCTGGGAAGCAGCGTCAGTGACTCTCGGAATTCAGTCATGTCCTTCGACAGCTCCGGGGTCCAATTCAGGAAGCCCATGGCGCCCCGAGATGGCTTCAGCCACCACTCGCTAGATCGAAGCGCCATGCGGAGCCGGGCCAACTGTCGGCTACGACGACGCTCCTCCAAGCTCAAGTTGAAGATCCCAAACCTGTCAGATGTTAGCACCATTGACAAATGGTCCCGGGTCATTTTCCCTATCACCTTTGGATTTTTCAACCTAATCTACTGGTTGTACTATGTGAATTGATGTGCATCCAACTAGGAATCATGGGCCATATTTTGAGAGCACATTAAATTGGCTTTGATACAGTTCCAAAatatgtatacacatatacaagTTGAACATATGTATatgcatatttatatatattatatttatatatacacgtGTGAAATCTGAGGGACCTTTCTGCTGTACAAAGTATTAATAGGATGACTTGAATGTTTAAGAATAATCGTGAGAGAAGAATTTCAAGGCTTTGAGTTTCTTTTTCCtcctgaaagaaagaaaaaaagaaagaaacaaacacacacgagATCCCACCTGGGGTTTTGGAACTAAAGACTGCATGATATTtttgctaaaaaaacaaaacaacaacaacaagaaaaaagagaaagtgaaCGCTCTTGAGAGAGAAAAGATGTCTCAGAGTCCCATTGACTTTTTATTGATACTTATTGTAATCAAAAATCCTCTCCTGCAGCTCATAAAATCAGTGGTGGCTCGTCTGTTCAGGCATCAGCTGAGTGAGATCCTTGACACCCCCCACCCAACCgacccctcccc
>XM_039777577.1
TCCAAAGGAGACGAGAGACCTCCCCATCATGTCTCTTCGGACTGTTGAATGTCTGTCATTTGTTCAGTGTTTCGAGGAGAAGACGAGCGGACCACATTAACGTGTTGAAACGCCATTTATCGTTGGACAGCGGAGGCAAGTGGACTTTTCAAATAGGTTTGCATCTTTGATATGATACCCGACGCTGTGATACATGCATTGGCGTATAAGGGGCCATCCATATTTCTCGGcatctcattttttttcttccagagcAGGAGTGATATAGCCTGCTCTGACGTCTGCATCAGATATTACCCAGTGCTTTTTCAATGTGCATTTTCCCCTCAGTGACTTTGCGCTGATCTACATCATCATCAGCAGGAGCaacggggggggggaaaaaagggaatgaagatttcttttttcttttttttaaacccaccGCTCCCCTTCAGCCGACCAGCGTTTCCAGCTCAAACAAATATCTTTTAACAACATCACGTTGTGGAATAGTCTGGCGCCAGAGCATCGCTGGAACCATGCCTCTTCTGCAGATTTGGACTGGGAAATTTCATCCACCAATTTGATCACCAAGAGGCTGCCGCTCAGTCATTAAtgccagtgtttgtttttttaaggggAAGAATACTTGTCATtacttttaaaagtattgtgtaTGCTGTTTTTTGAGCAAGATGTCTGATCTTCTGGTGTTGGTCGAGGGGCTCTGTGACCTGCACGGATTTCCATAGCCGGGGAAAACAGCGGGGGCCAATTacgagatttctttttttttttttttttttttgatcaaGAAGCCTATTTTAATGAAGACATCGCATGCGTAGATGTAGGCTAGTTTATTCGACATTTTTAAAAggcaattattattttttttaattgccagTTTTTACTTTGTGCATTTTCTGGAGGACCACTGGACTGGTTGGATTATAGAAACTATATATAAGGATTTGTGGAGATGTTGGGTCGTCAAGAAGATAAATTATGTGGAATTTTCTCTGCTCTGGCGGCTTTGTCCTTCTTCTGCTTTGTTCAAAGCTCTTCCACTGGAAGCACCGGAATGTCTGTGGCCAAGACCACCGTGGACAAGTTGCTGAAGGGATATGACATCCGTTTAAGGCCTGATTTTGGAGGTCCTCCAGTCATCGTAGGAATGAGCATCAACATAGCGAGCATCGACTCCATCTCAGAAGTAAACATGGACTACACCATCACTATGTATTTCCAGCAGAGCTGGCGAGATAAGCGTTTGGCCTATGGTGAGCTGAAGCTAAACTTGACTCTGGACAACCGTGTAGCAGACCAGCTTTGGCTCCCTGACACCTACTTCCTAAATGACAAGAAGTCCTTTCTTCATGGTGTGACAGTAAAAAACCGTATGATCCGACTGCACCCAGATGGCACTGTCTTATACGGGCTGAGaATAACCACCACTGCAGCTTGCATGATGGACTTGAGGAGGTACCCTCTTGATGAACAGAACTGCACCCTGGAAATTGAAAGTTATGGATATACCACAGATGACATCGTATTCTTCTGGCAAGGAGGAGACAGCGCCGTGACGGGCGTTGACAAGTTGGAGTTACCTCAGTTTTCCATTGTAGAACTCCGCTTGGTATCCAGGGAGGTCAGGTTTACTACAGGTTCATATCCAAGGCTTTCGCTGAGTTTCAGGATTAAGAGGAACATTGGATATTTCATCCTGCAAACATACATGCCCTCCATCTTGATCACCATCCTCTCCTGGGTCTCCTTCTGGATCAATTATGATGCCTCTGCAGCTCGGGTGGCCCTGGGTGTGACAACGGTGCTTACCATGACAACAATTAACACCCACCTTAGGGAGACTCTCCCAAAGATTCCGTATGTGAAAGCCATCGACGTCTACCTCATGggctgttttgtgtttgtgttcctgGCCCTGCTCGAATATGCCTTTGTAAATTACGTGTTCTTTGGCCGGGGCCCTGCGCAACAGAAGAAAATCAATGAGAGGCTGAACAAAGCCAACAACGAGCGCACAAGATACGAAGAGAAGCGCCTGAGGGAACAGGACTCCATTTCCGTGCCGTTTCAAACCAACACCTTCAGGTCATTTACACAGCGAAGAAATCTGTATCTCGAGGAACAAAGAAAAGTTGGGGTGGATGCTTATGGAAACATCCTCCTCACCACACTGGAGATGAACAACGAAGTGATGCCTTCAGACCTGGGAAGCAGCGTCAGTGACTCTCGGAATTCAGTCATGTCCTTCGACAGCTCCGGGGTCCAATTCAGGAAGCCCATGGCGCCCCGAGATGGCTTCAGCCACCACTCGCTAGATCGAAGCGCCATGCGGAGCCGGGCCAACTGTCGGCTACGACGACGCTCCTCCAAGCTCAAGTTGAAGATCCCAAACCTGTCAGATGTTAGCACCATTGACAAATGGTCCCGGGTCATTTTCCCTATCACCTTTGGATTTTTCAACCTAATCTACTGGTTGTACTATGTGAATTGATGTGCATCCAACTAGGAATCATGGGCCATATTTTGAGAGCACATTAAATTGGCTTTGATACAGTTCCAAAatatgtatacacatatacaagTTGAACATATGTATatgcatatttatatatattatatttatatatacacgtGTGAAATCTGAGGGACCTTTCTGCTGTACAAAGTATTAATAGGATGACTTGAATGTTTAAGAATAATCGTGAGAGAAGAATTTCAAGGCTTTGAGTTTCTTTTTCCtcctgaaagaaagaaaaaaagaaagaaacaaacacacacgagATCCCACCTGGGGTTTTGGAACTAAAGACTGCATGATATTtttgctaaaaaaacaaaacaacaacaacaagaaaaaagagaaagtgaaCGCTCTTGAGAGAGAAAAGATGTCTCAGAGTCCCATTGACTTTTTATTGATACTTATTGTAATCAAAAATCCTCTCCTGCAGCTCATAAAATCAGTGGTGGCTCGTCTGTTCAGGCATCAGCTGAGTGAGATCCTTGACACCCCCCACCCAACCgacccctcccc

Function

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit beta-4-like isoform X1

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0007165 signal transduction biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05181 GABRB; gamma-aminobutyric acid receptor subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039777576.1 False 2313 mRNA 0.46 10 26297439 26534041
XM_039777577.1 True 3046 mRNA 0.45 10 26297439 26354322

Neighbor

gene id symbol gene type direction distance location
LOC120544066 NA coding downstream 21479 26270988 ~ 26275960 (-)
mpp1 mpp1 coding downstream 45570 26240349 ~ 26251869 (-)
pcolcea LOC103363028 coding downstream 76719 26214114 ~ 26220720 (-)
LOC120544213 LOC104942368,LOC103363032,LOC106949254,LOC108233826,LOC103475896 coding downstream 133732 26161865 ~ 26163707 (-)
fgf11b LOC103363034,LOC101476161,LOC102787886 coding downstream 245220 26002725 ~ 26052219 (-)
si:dkey-175m17.7 LOC103363373,LOC104926337,LOC104958000,LOC102781095,LOC101468104,LOC102297217 coding upstream 168914 26702955 ~ 26721404 (-)
slc8a4a LOC103363370 coding upstream 201401 26735442 ~ 26759988 (-)
tm7sf2 tm7sf2,LOC102779860 coding upstream 253367 26787408 ~ 26801749 (-)
vps51 vps51 coding upstream 268216 26802257 ~ 26807914 (-)
frmd8 frmd8,LOC102779292 coding upstream 278164 26812205 ~ 26823192 (-)
G168876 NA non-coding downstream 14257 26282854 ~ 26283182 (-)
G168856 tmem88,LOC104942396,LOC103394747,LOC105024597 non-coding downstream 93635 26201627 ~ 26203804 (-)
G168800 NA non-coding downstream 320982 25972341 ~ 25976457 (-)
G168774 NA non-coding downstream 382060 25880884 ~ 25915379 (-)
G168779 LOC103357740,LOC102196465 non-coding downstream 453097 25841925 ~ 25844342 (-)
G168928 NA non-coding upstream 61852 26595893 ~ 26597634 (-)
G168963 NA non-coding upstream 143222 26677263 ~ 26681142 (-)
G168966 NA non-coding upstream 153338 26687379 ~ 26688825 (-)
LOC120543914 NA non-coding upstream 519005 27053046 ~ 27056568 (-)
G169118 NA non-coding upstream 714774 27248815 ~ 27288981 (-)
vamp2 vamp2,mpp1,LOC103367795,LOC104941032,LOC107742350,LOC107720682,LOC107082578,LOC107386619 other downstream 61245 26224819 ~ 26236194 (-)
pcdh1a LOC103357738,LOC108233889,LOC101479736,LOC102299879 other downstream 574221 25623735 ~ 25723218 (-)
LOC120544362 msi2,LOC103475888 other downstream 1392586 24655803 ~ 24904853 (-)
LOC120543987 NA other downstream 1800857 24490560 ~ 24496582 (-)
radx LOC103366308,LOC106923634,LOC103133962,LOC106955728 other downstream 1891562 24395776 ~ 24405877 (-)
ammecr1 ammecr1 other upstream 40888 26574929 ~ 26612717 (-)
G168964 NA other upstream 147473 26681514 ~ 26684956 (-)
gng3 gng3,LOC107559409 other upstream 154838 26688879 ~ 26693041 (-)
flrt1a flrt1,LOC104926332,LOC103360355 other upstream 336509 26870550 ~ 26941207 (-)
emc6 emc6 other upstream 981849 27515890 ~ 27519001 (-)

Expression


Co-expression Network