LOC120544428 (LOC104955023,LOC103370384)


Basic Information

Item Value
gene id LOC120544428
gene name LOC104955023,LOC103370384
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 25300564 ~ 25308323 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039778157.1
ACGTACAGCTGGACGTCTCGGAGAAGATAAACAAAAAGGAAGGAAGCCTTCGGCCATACGTTCGCGGCAAAATCGGTTCGAAAATTTAGCTTGCAAGCTACGGTTAACAACTACATGTGCCCTTATATTGCTTAGATAGTTACCATTTGGCGTTAACAATCATGGACGAGGGGATAATATTTCGTATGAGTGCATATTCCGAGCAAGGTGGGAGGAAATACATGGAGGATGTTGTCGATATAAGAATCGAGTACGAGCCGACGCAGTCGCCGTCGCCAGGCGAAGATTATCCAAAGTCGCAGGGACATGGAGGACAGGGGAAAGCGGAGAGCGAACCTACAAAACAGACTGAAAATGAGACACATGATCAGAACGTAGCTGCCGAATCTGCCCCAGTTTCTGCAGTGTGGGTAGAGAGTCTATCAAATGAGGACAGTGGCAACAACAGTGCACCGGTATCAGAGGAAAAAGTCGCAGGGCAAGCAGTCGACACTCGGAGGTCTGTGGCGTTTTTCGCTGTTTTTGATGGCCACGGGGGTCGAGAAGCAGCACATTTCGCAAGAGAGAATCTGTGGGAGTTATTGAAAAGACAGCGGGGGTTTTGGTCGAAGGATCACAGTGAAGTGTGTGCCGCTCTAAAGAAAGGGTTCATCGCCTGTCACCATGCAATGTGGAAAGAGCTACCGGAGTGGCCAAAGACTGTTACTGGCCTGCCCAGCACATCAGGCACCACAGCCAGCGTGATTGTGATCCGCGGAGTTCACATGTACGTGGCCCATGTAGGGGATTCGGCAGTAGTGGTTGGAGTGCAAGAAAATGACTCTGATATCAGGCTCCAGGCACTTGAAATAACACAAGACCATAAACCTGAACTtcctaaagaaaaacaaaggatTGAACGGCTGGGTGGCAGTGTAATGAAGAAATCTGGGGTGAACCGTGTTGTGTGGAAGAGACCCAGGCTGACCCATAACGGCCCTGTGAGGAGGAGTACAGTCATTGACCAGATCCCCTTCCTTGCTGTGGCCCGGTCCCTCGGGGATCTGTGGAGCTACGATTTCTACAGCGGGGAGTTTGTGGTTTCCCCAGAGCCCGACACCACCGTGATGACGCTTGACCCCAAGCGGCATCGCTACATCATCCTCGGCAGTGACGGACTGTGGAATATGATGCCACCCAGTAATGCGGTCAATATGTGTTCTAGCCACGACAAAATGGTGGGACCAAAGGGAATGTCTTGCGCCTGCCGGCTGGGATGCACGGCCTTACTGTTTTGGAAAGAACGCATGCTCCGTGCAGACAACACAACAGTTATTGTCCTGGCCCTACAGGTGCGCGGGGACCCACCCATCCCTATGCATCAAGATGAGATCGTTGTTGACATGTCTACAGGAATGGACCATCTTCCATTCCCAGGAACTACTTATAACACAATGTGTCGGGTCCAACCGGTGAGTGCCAGAGCATCGTTGGATCCTCCATATGAGGAGCCTGATGATGACATGTTTTTTGAAGAAGATGGGATATATGGAGAAGACCATGAGGGATGGCCATGCCTGGAGTGGTAGTGAGcgGATTGATGCAGCAAATGCTTCCACAGCTGCGGAGCAGGCATTTGGGCTGTATGAAGCAGCTTTCTGTGCCACAGCACAGCTCTTACCTGATGTTGACTCTGTGAGGGCCACactgcccccccaccccctcagaGGGTTCCGTGAATGTTATCGAAAAGCATGACTCTACAACCCAAATGGACTGTGCAACTCCTCCGT
>XM_039778158.1
CGTACAGCTGGACGTCTCGGAGAAGATAAACAAAAAGGAAGGAAGCCTTCGGCCATACGTTCGCGGCAAAATCGGTTCGAAAATTTAGCTTGCAAGCTACGGTTAACAACTACATGTGCCCTTATATTGCTTAGATAGTTACCATTTGGCGTTAACAATCATGGACGAGGGGATAATATTTCGTATGAGTGCATATTCCGAGCAAGGTGGGAGGAAATACATGGAGGATGTTGTCGATATAAGAATCGAGTACGAGCCGACGCAGTCGCCGTCGCCAGGCGAAGATTATCCAAAGTCGCAGGGACATGGAGGACAGGGGAAAGCGGAGAGCGAACCTACAAAACAGACTGAAAATGAGACACATGATCAGAACGTAGCTGCCGAATCTGCCCCAGTTTCTGCAGTGTGGGTAGAGAGTCTATCAAATGAGGACAGTGGCAACAACAGTGCACCGGTATCAGAGGAAAAAGTCGCAGGGCAAGCAGTCGACACTCGGAGGTCTGTGGCGTTTTTCGCTGTTTTTGATGGCCACGGGGGTCGAGAAGCAGCACATTTCGCAAGAGAGAATCTGTGGGAGTTATTGAAAAGACAGCGGGGGTTTTGGTCGAAGGATCACAGTGAAGTGTGTGCCGCTCTAAAGAAAGGGTTCATCGCCTGTCACCATGCAATGTGGAAAGAGCTACCGGAGTGGCCAAAGACTGTTACTGGCCTGCCCAGCACATCAGGCACCACAGCCAGCGTGATTGTGATCCGCGGAGTTCACATGTACGTGGCCCATGTAGGGGATTCGGCAGTAGTGGTTGGAGTGCAAGAAAATGACTCTGATATCAGGCTCCAGGCACTTGAAATAACACAAGACCATAAACCTGAACTtcctaaagaaaaacaaaggatTGAACGGCTGGGTGGCAGTGTAATGAAGAAATCTGGGGTGAACCGTGTTGTGTGGAAGAGACCCAGGCTGACCCATAACGGCCCTGTGAGGAGGAGTACAGTCATTGACCAGATCCCCTTCCTTGCTGTGGCCCGGTCCCTCGGGGATCTGTGGAGCTACGATTTCTACAGCGGGGAGTTTGTGGTTTCCCCAGAGCCCGACACCACCGTGATGACGCTTGACCCCAAGCGGCATCGCTACATCATCCTCGGCAGTGACGGACTGTGGAATATGATGCCACCCAGTAATGCGGTCAATATGTGTTCTAGCCACGACAAAATGGTGGGACCAAAGGGAATGTCTTGCGCCTGCCGGCTGGGATGCACGGCCTTACTGTTTTGGAAAGAACGCATGCTCCGTGCAGACAACACAACAGTTATTGTCCTGGCCCTACAGGTGCGCGGGGACCCACCCATCCCTATGCATCAAGATGAGATCGTTGTTGACATGTCTACAGGAATGGACCATCTTCCATTCCCAGGAACTACTTATAACACAATGTGTCGGGTCCAACCGGAGGAGCCTGATGATGACATGTTTTTTGAAGAAGATGGGATATATGGAGAAGACCATGAGGGATGGCCATGCCTGGAGTGGTAGTGAGcgGATTGATGCAGCAAATGCTTCCACAGCTGCGGAGCAGGCATTTGGGCTGTATGAAGCAGCTTTCTGTGCCACAGCACAGCTCTTACCTGATGTTGACTCTGTGAGGGCCACactgcccccccaccccctcagaGGGTTCCGTGAATGTTATCGAAAAGCATGACTCTACAACCCAAATGGACTGTGCAACTCCTCCGT

Function

NR:

description
PREDICTED: protein phosphatase 1D-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039778157.1 True 1772 mRNA 0.51 7 25300564 25308323
XM_039778158.1 False 1738 mRNA 0.51 7 25300564 25308322

Neighbor

gene id symbol gene type direction distance location
LOC120575594 NA coding downstream 20605 25272811 ~ 25279959 (-)
LOC120543755 NA coding downstream 31106 25234466 ~ 25269458 (-)
vezf1a vezf1,LOC103359320 coding downstream 316433 24967825 ~ 24984131 (-)
ksr1a ksr1 coding downstream 340863 24930291 ~ 24959701 (-)
LOC120575606 NA coding downstream 376263 24920275 ~ 24924301 (-)
LOC120544470 LOC103357746,LOC104954804 coding upstream 117186 25425509 ~ 25512356 (-)
LOC120544034 cldn7,LOC104920020,LOC106510789 coding upstream 670904 25979227 ~ 25983358 (-)
LOC120543604 NA coding upstream 676990 25985313 ~ 25998490 (-)
fgf11b LOC103363034,LOC101476161,LOC102787886 coding upstream 694402 26002725 ~ 26052219 (-)
LOC120544213 LOC104942368,LOC103363032,LOC106949254,LOC108233826,LOC103475896 coding upstream 853542 26161865 ~ 26163707 (-)
G168657 NA non-coding downstream 132332 25157523 ~ 25168232 (-)
G168570 NA non-coding downstream 667224 24628399 ~ 24633340 (-)
G168561 NA non-coding downstream 693402 24606212 ~ 24607162 (-)
G168515 NA non-coding downstream 822264 24474533 ~ 24478300 (-)
G168504 msn,LOC107103672,LOC106955558,LOC101079839,LOC102221775 non-coding downstream 830449 24466751 ~ 24470115 (-)
LOC120544369 NA non-coding upstream 210146 25518469 ~ 25619997 (-)
G168754 NA non-coding upstream 369554 25677877 ~ 25678225 (-)
G168775 NA non-coding upstream 493467 25801790 ~ 25802142 (-)
G168776 NA non-coding upstream 509956 25818279 ~ 25818493 (-)
G168778 NA non-coding upstream 530330 25838653 ~ 25838859 (-)
LOC120544362 msi2,LOC103475888 other downstream 395711 24655803 ~ 24904853 (-)
LOC120543987 NA other downstream 803982 24490560 ~ 24496582 (-)
radx LOC103366308,LOC106923634,LOC103133962,LOC106955728 other downstream 894687 24395776 ~ 24405877 (-)
LOC120544713 LOC104954531 other downstream 1324243 23974554 ~ 23976321 (-)
thoc2 thoc2,LOC102794734 other downstream 1351704 23920564 ~ 23948860 (-)
pcdh1a LOC103357738,LOC108233889,LOC101479736,LOC102299879 other upstream 315412 25623735 ~ 25723218 (-)
vamp2 vamp2,mpp1,LOC103367795,LOC104941032,LOC107742350,LOC107720682,LOC107082578,LOC107386619 other upstream 916496 26224819 ~ 26236194 (-)
ammecr1 ammecr1 other upstream 1266606 26574929 ~ 26612717 (-)
G168964 NA other upstream 1373191 26681514 ~ 26684956 (-)
gng3 gng3,LOC107559409 other upstream 1380556 26688879 ~ 26693041 (-)

Expression


Co-expression Network