LOC120575594


Basic Information

Item Value
gene id LOC120575594
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 25272811 ~ 25279959 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039826392.1
CAGACGTGTGACAGTGTAAACATCATCTCTAGGACTCTCTCTGTCTTCACTACTCGGTGCCACTGCAATTTTTACAAGGTTTGAACAAGCTTTGCGCACGCATGGTCCCAAAGTGAGCTGCCCTCTCCATGTTGGATCTACCAGCGGATAGGGTACATGCCTTTGACATTGTAACGTTATCTGGAGATTTCTGAAAATTTGCATTCCCTCCTTTTGATCTCTCTTTCATGCTACAAAACTCACAAACTCTTAAAACGGTTTGTTGCAATTCAGCAAGCGGGCAGAGACTTTATGGTAGCGAGCTGTCAGATCGGATGCCCCGATGAGAGATCCAGTTGACACAGCGGCTGCCATGGCTTACCATCCTTTCCAGGCTCATCGACCAGGTGCCTTGACCTTGTCAACCTTCTTTACCGCCGCTCAGCCCTCGTTTTTCCCTGCAGCGCTGGCTTTCCCAGACGCCGCCCCCCTGTCCGAGCCTGTGCCGGAGCAGGCTGCCCCTGATGCGGGGCTGCGCGCAGCTCCGGGACGCCAGGAGCAGCCAGTTCACCCGCGCCCCTTGAAAAGTGCGCAGACAGAAGAATGGCTCGACGATGACCCGAAAGTCACACTGGAGTCAAAGAATTTATGGAAAGAATTTCACAAAATGGGAACTGAGATGGTTATAACAAAATCAGGAAGGAGGATGTTTCCAGCTTTCAAAGTGCGGGTAAACGGGCTGGTTGAAACAGCAAAGTATATCCTGCTGATGGACATCGTCGCTGTTGATGAGTGCCGCTACAAGTTTCACAACTCCCGCTGGGTGGTGGCTGGAAAAGCTGACCCGGAGATGCCAAAGCGCATGTACATCCACCCAGACAGCCCGTCCAAAGGAGAGCAGTGGATGAGCAAGCCCGTCGCTTTTCATAAATTCAAACTCACAAATAATATTTCGGACAAGCATGGATTTACAATTTTGAATTCAATGCATAAATACCAACCCAGATTCCATATTGTGAGAGCCAACGACATAATGAAGCTTCCGTACAGCACCTTCCGGACTTACGTTTTCCCGGAGACGGAGTTCATCGCGGTCACAGCGTATCAGAATGGAAAGATTACACAGCTAAAAATCGACAACAACCCCTTTGCCAAAGGATTCAGAGACACAGGAAATGGGAAACGAGAAAAAAGGTATAAGCCTTTCACTATTTCTTCAATGCATGAGACTGAAAGCAAAGCGGACCGGGACTGTGCTGATTCTGATGACTCATGTGAACAACCCAGTACCAGTGATCCTTTTTATTCCCCTCGGGAGCTGGTGAGCAGTCCTCTGATGTCCACACCAACCTGTCAAGaTGTGAACAATATTGGAAGTGATTCAGATGTTGATCTACAAGATAAGGACATTGCTGAAGCCAGCTGTTCCAGGACTGAACATGTGTCTACTTTGAGTCAGAAGAGCGAGGAGATACTGTGGAACGAGGCTGCTCACAGTAAGAGCGACGACAATCAGGATACAACAAAAGAGAGAACAATGTTTAGATCATCAGATGATATGTACTCTGTGGAGACTGATTCTTCAAAAAGGCACATGAGCGAAACCAAAGATGGGGTCCTGCCTATGATGTTGCAAACACAGAGCTCATCGTCCCTCAGCGCTGGTCACCTTCAGACTTTGGATTTCTCGAGTGCGCACAGCCAACAGTTTCTTAAGCTTGGGGCACCTTGGTTGTTTCACCCAGGACAGTTGTCAGTTAAGCCGGAGGGTATGGGACATCTGTTGTCTTCCTTGCCTGGAGTAGAAAATGGAGGCCTGTCTTCTCAAAGCATCACCTCTCCATCTCCCTTCATGTTTCACCACATGCTGGCATCTCAGGGAATCTCACTGTCACCCTTTGGAGGACTTTTCTCCTATCCATACGGCTACATGGCAGCACCAGCTCTCCCCACCTGTTCGGCAACCTCTACGCTGGCCAGAAACCACTGTTTCCGCAGCGCTCAGCCTTGGTTGCGTTTCAGCCCTTATCAGATCCCCAACTCTGTCAACTCAAGCCAAAACCTGTTCGCAACCAGACCGCCTAGCAGTTCAATCTCCCAATCTAAGGTATCCAAATCAGAGAGCAGACAGTCAAGTCCAGTGTCTGACAATCAAAGTCACAAAACCAAAGCCAAGCAGAAGTGTGCTTCACCGAAAATCAGCAAGTGTTCAGTTAATGAACTGCAAAACACAGAGAACCCAGTTACAGGACTTGATAAGCGACTTCCTCCACAATAGACTCTATGTTGTTTGTGATCCTTCAAGTGGTGGATACTGGGTAACAGACAAGTTTACGTAGTTCCGCATAATCacctaaaataaatattttgtcagAAACTGCATGTGTTGCTGCTTTTGTCATTATATCGTCAATAAACCTGATTAATAAACATTGATTTGGTAAGATTTACAGGTCAAAAGAGACTGATTTATGTTAACATTAATTATATTTAGGCCTACTATATTTCAGTGTGAAGGAGGTTTCTCACTACATGTTTGAATATAGTAATTTTTATATGCAACCTAGACGtcttaaattactttttatcactttttttttagccaAATTGAGTCCAGTTTTAACATAAGACATCATGGTGTCTTTTGGTTTGTGAAAACACCAAATTGACATTTACTGGAAGTTctgaaaacttttaaaaagatgGTCATTGGAATTCATTTAGGGAAAACGAGCTATGCAAAACTCAATACCCAAAGTGGAATGCTATATAGAACGACAATGATAtgcttaaaatatgaataaaacattCCTATTGCTTCATTCTGTATGAtggtgtatatatttttctcatttcacaTTCTGTATAAAACATGGCTAATCAAAGCTTTTTGAGACTGAACACTGTAACTTGAACTGATCACTGTTATCCTGCCATTGATATATGAGTAAATTGTAAGCCACTTGTTCACATTCTACCAAAGCAGCACCGTGGACTGGGATGGAAAACTCaggatgcttttatttttaccaGCACTTAAGAAAAATGTCTTCATTAACCTGGCAGGCTATCTGCCAAACTATTCAGGTgaattgtgtttctttttttttctcacaatttAAATAAAGATTTCACATTTCATGCAA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process

KEGG:

id description
K10176 TBX2; T-box protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039826392.1 True 3125 mRNA 0.44 7 25272811 25279959

Neighbor

gene id symbol gene type direction distance location
LOC120543755 NA coding downstream 3353 25234466 ~ 25269458 (-)
vezf1a vezf1,LOC103359320 coding downstream 288680 24967825 ~ 24984131 (-)
ksr1a ksr1 coding downstream 313110 24930291 ~ 24959701 (-)
LOC120575606 NA coding downstream 348510 24920275 ~ 24924301 (-)
LOC120575671 NA coding downstream 353696 24915213 ~ 24919115 (-)
LOC120544428 LOC104955023,LOC103370384 coding upstream 20605 25300564 ~ 25308323 (-)
LOC120544470 LOC103357746,LOC104954804 coding upstream 145550 25425509 ~ 25512356 (-)
LOC120544034 cldn7,LOC104920020,LOC106510789 coding upstream 699268 25979227 ~ 25983358 (-)
LOC120543604 NA coding upstream 705354 25985313 ~ 25998490 (-)
fgf11b LOC103363034,LOC101476161,LOC102787886 coding upstream 722766 26002725 ~ 26052219 (-)
G168657 NA non-coding downstream 104579 25157523 ~ 25168232 (-)
G168570 NA non-coding downstream 639471 24628399 ~ 24633340 (-)
G168561 NA non-coding downstream 665649 24606212 ~ 24607162 (-)
G168515 NA non-coding downstream 794511 24474533 ~ 24478300 (-)
G168504 msn,LOC107103672,LOC106955558,LOC101079839,LOC102221775 non-coding downstream 802696 24466751 ~ 24470115 (-)
G168713 NA non-coding upstream 18618 25298577 ~ 25310102 (-)
LOC120544369 NA non-coding upstream 238510 25518469 ~ 25619997 (-)
G168754 NA non-coding upstream 397918 25677877 ~ 25678225 (-)
G168775 NA non-coding upstream 521831 25801790 ~ 25802142 (-)
G168776 NA non-coding upstream 538320 25818279 ~ 25818493 (-)
LOC120544362 msi2,LOC103475888 other downstream 367958 24655803 ~ 24904853 (-)
LOC120543987 NA other downstream 776229 24490560 ~ 24496582 (-)
radx LOC103366308,LOC106923634,LOC103133962,LOC106955728 other downstream 866934 24395776 ~ 24405877 (-)
LOC120544713 LOC104954531 other downstream 1296490 23974554 ~ 23976321 (-)
thoc2 thoc2,LOC102794734 other downstream 1323951 23920564 ~ 23948860 (-)
pcdh1a LOC103357738,LOC108233889,LOC101479736,LOC102299879 other upstream 343776 25623735 ~ 25723218 (-)
vamp2 vamp2,mpp1,LOC103367795,LOC104941032,LOC107742350,LOC107720682,LOC107082578,LOC107386619 other upstream 944860 26224819 ~ 26236194 (-)
ammecr1 ammecr1 other upstream 1294970 26574929 ~ 26612717 (-)
G168964 NA other upstream 1401555 26681514 ~ 26684956 (-)
gng3 gng3,LOC107559409 other upstream 1408920 26688879 ~ 26693041 (-)

Expression


Co-expression Network