wdr36 (wdr36)


Basic Information

Item Value
gene id wdr36
gene name wdr36
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 34332321 ~ 34355356 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039779456.1
TCGTGCTGGTGTTTGTAGTTTCCAGTCGGACTCAGTTCCCCGGTGCTCCTCCATGTGTTGTGTCTCTCTCCGCTCCGCTCCTCCCGGTGTgtctcgctgtgtgtgtgtgtattcacgGTAGTCTCTCCGTTCCCCGGTCCAGCCCGCTGTTACCggacatcatgccggtcggcgGCAGCGCTCTGTTCTCCGGGTTCCGGGTTCTGGGTCTCTACTCCGGCCACGTGCCGCACGCGCTCCGGTACCACCAGAAGCACCGGGAGTTCTACGTGGTGACGGCGGTCGGTAGAAGCTTCCACACGTACAACGTGAACAGGCTGGGGATCGTTGCTGTCAGTAACAGCCTGCCCGATGACATCAGCTGTATGGCAGCAGACAGGATGTTGGTGTTCGCCGCCGCGGGCCGAGACATCAGCGCCTTCGCTCGCAACAAAGAGGTGGTGATGCGTTACCATGGACACAGGCAGGAAGTGCGTCTGCTGCTTCCTCTGGGCGATCAGCTGATCTCAGCCGACGCTGGTGGTGATGTCATCGTGTGGGACGTCCAGGGAGGAGacgaGTACCTGCGGCTGCAGTTTGACTCCGCCTCCTTCGACGTGTCGGCCATGATGCATCCCAGCACCTACCTGAACAAGGTGCTGCTGGGAAGCTCCCAGGGTGCACTGCAGCTCTGGAACATCAAGaccagtaagTTGGTGTTTACGTTCCCCGGCTGGTCAGCAGGAGTCACCTCTCTGCAGCAGAGTCCCGCGGTGGACGTGGTCGGCGTCGGCACGGCAACAGGACGCATCATCATTCACAACATCCGATTGGACGAGACGCTGATGAGCTTCACACAGGACTGGGGACCAATCACCTCGCTCGCTTTCAGAACAGacggTCCTCCCATCGTGGCGTCTGCTAGTCCTCAGGGCCACATTGCATTCTGGGACCTGGAGCGCCGTCAGCTGGTCACTCAGCTGAGACACGCCCACAGCACGGCCGTCGCCGCGGCAACCTTTGTCCACAGAGAGCCGCTATTGGTCACCAACGGAGCGGACAACGCCATCAAGGTGTGGATATTTGACCAGGAagggggcggagccaggctgCTGAGGAGTCGTCAGGGTCACAGTGCCCCGCCCACAACCATCCATCACCACGGCAACGATGGGAAGAACATCCTCAGCGCCggTCAGGATGGGACACTGCAGTCCTTCTCCACGGTCCACGAGCGCTTCAACAAGAACCTGGGTCacggcTCCAtcaacaagaagaaagagaagaagaagaagaaggggttGTCCTATGAGGAGCTGCGTCTTCCTGCCATCACAGCTTTCTCCTCCGcgGCTGCTCGCCAGTCTGACTGGGACGGCATCGTTGCGTGTCACCGTGGTCGCCTAGCAACCACGACGTGGAACTACCAACGGTGCACCATGGGAGCTCATCACCTGCAGCCGCCGATCGCTCGCGGCAACGCCATCGCTACGGCTGTCGACATCACTTCCTGCGGGAACTtcgctgtgattggctcgtcGTGTGGCCGCGTCGACGTGTACAACCTGCAGTCAGGCCTGCACCGCGGCTGCTATGGCAACGAGGAGAAAGCTCACAGCGGTGCGGTGCGAGGCGTTGCCACGGAGACCCTGAACCAGATGACCTTCACCGcgggctctgattggctgctcaAGTTCTGGCGCTTCAAGAGCAGGAAACAGGAAGATCAGCTGAAGCTACACGCTGCACCGGCTAGCATGATGCTACACAGAGACAgCGGGATGCTAGCACTAGCGCTGGATGACTTCACGCTAGCGGTGGTCGACATAGAAACCAGACGGGTCGTCAGGAAGTTTGCAGGTCACCATGGCAACGTCAACGACATGACATTCAGCCCTGACGGCCGGTGGCTGGTTACCGCGGCGATGGACTGTACCATCCGTACCTGGGACCTCCCATCTGGAAGtctGGTGGACTGTTTCCTGGTTGCCATGGCGCCGGTGGGCGTGTCCCTGTCGCCGACCGGAGACTTCCTGGCGACGGCTCACGTGGACAGTCTGGGCGTGTACCTCTGGACCAATAAGAGCCTGTGTGGACCTGTGGGGCTCCGCCCCCTCCCGGCTGACCACCAACCGACCGAGGAGACCCTGCCGGGCGTCACGGTGGACGAATcggaacaggaagtgacatcagaGGAGGTCGATGATGCGTACGAGTCGGCAGAGCAGCTGGGGGCGGAGCTTGTGACGCTGTCGCTGCTGCCGGAGTCTCGCTGGAAGAGTCTGCTGCACCTCGACGTCATCAAGaggaggaaTAAACCTGTagctcctcctgctgctccgGCTGCTGCTCCGTTCTTCCTGCCAACACTTCCTGGTCTCACGCCGAGATTCGCCGCGCCTACGGCAACCGAACAGGAAACACAGTCCAAGCTGCTGCGTTGGGGATTGTTGTCTCAGAGGTCAGAGTTCAGCTCTGATCTGGAGTCAGCGCTGCAGACCGGATCATttgAGCGCCCGCTGCGTCTCCTGAAGGATTGTGGGCCGTCGGCGCTCTCTGTGGAGCTCAGCGCTCTGACATCAGAGGGGGGCGGAGCCAGCGGTCTGACATCAGAAGGGGGCGGGGCCAGCAGCCTCCTGCTCGCCTTCATCCAGATGATTGACAGCATGTTGGCCAGTGGGCGGGACTTCGACCTGGCGCACGCCTACCTGGCTCTGTTCCTCAagCTCCATCTCCGCTCGCTGTCGCAGGAccctgttgccatggcagcGTTGCTCCGCCTCTCCTCCCGGCTGGAGGCGGGATGGGCGGAGCTACAGGCTTCATTCGACCAATCATTGTGTCTGCTGACGTATGCCAAGAGCGCTctgctgtaacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacacacacacacacacacacacacacacagacacacacacacag

Function

symbol description
wdr36 Acts upstream of or within rRNA processing. Located in cytoplasm and nucleolus. Is expressed in digestive system; heart; immature eye; nervous system; and somite. Human ortholog(s) of this gene implicated in glaucoma and primary open angle glaucoma. Orthologous to human WDR36 (WD repeat domain 36).

NR:

description
WD repeat-containing protein 36 isoform X1

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0032040 small-subunit processome cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K14554 UTP21, WDR36; U3 small nucleolar RNA-associated protein 21

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039779456.1 True 2956 mRNA 0.61 22 34332321 34355356

Neighbor

gene id symbol gene type direction distance location
LOC120545262 NA coding upstream 285697 33997411 ~ 34046624 (+)
LOC120545261 NA coding upstream 383070 33936243 ~ 33949251 (+)
LOC120545095 NA coding upstream 426159 33899181 ~ 33906162 (+)
LOC120545260 NA coding upstream 433264 33894650 ~ 33899057 (+)
LOC120545259 NA coding upstream 452662 33872512 ~ 33879659 (+)
LOC120545317 NA coding downstream 216463 34571819 ~ 34948439 (+)
fktn fktn coding downstream 422498 34777854 ~ 34797178 (+)
si:ch211-202f5.2 NA coding downstream 495245 34850601 ~ 34851604 (+)
LOC120545265 man2a1 coding downstream 631314 34986670 ~ 35023782 (+)
LOC120545273 NA coding downstream 779115 35134471 ~ 35143485 (+)
G180163 NA non-coding upstream 21042 34310611 ~ 34311279 (+)
G180160 NA non-coding upstream 35774 34294914 ~ 34296547 (+)
G180159 NA non-coding upstream 70143 34258173 ~ 34262178 (+)
LOC120545350 NA non-coding upstream 120836 34209549 ~ 34211485 (+)
LOC120545347 NA non-coding upstream 126467 34198447 ~ 34205854 (+)
G180174 NA non-coding downstream 116053 34471409 ~ 34473459 (+)
G180194 NA non-coding downstream 158390 34513746 ~ 34540775 (+)
G180197 NA non-coding downstream 187301 34542657 ~ 34544486 (+)
G180198 NA non-coding downstream 189970 34545326 ~ 34548922 (+)
G180203 NA non-coding downstream 218185 34573541 ~ 34611303 (+)
slc25a46 slc25a46,LOC102789456 other upstream 3058 34318593 ~ 34329263 (+)
slc31a1 slc31a1 other upstream 23527 34282844 ~ 34308794 (+)
G180043 NA other upstream 492934 33838192 ~ 33839387 (+)
G180040 NA other upstream 506983 33824342 ~ 33825338 (+)
dmtn LOC102797496,LOC102303313,LOC101469122,LOC102075582 other upstream 587128 33708725 ~ 33745193 (+)
G180199 NA other downstream 202226 34557582 ~ 34560385 (+)
G180201 NA other downstream 209524 34564880 ~ 34565952 (+)
G180213 fktn other downstream 360930 34716286 ~ 34803750 (+)
G180216 NA other downstream 451902 34807258 ~ 34814910 (+)
G180268 NA other downstream 597708 34953064 ~ 34955966 (+)

Expression


Co-expression Network