slc31a1 (slc31a1)


Basic Information

Item Value
gene id slc31a1
gene name slc31a1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 34282844 ~ 34308794 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU244017
CGAGTTTCTTCATAAACTTTATTCAGATTTCTTTCAATGATTCCAGCATTTGagacattaaaacattttaatattctGATAAACAGTTTCcttcacagacagagagagagacttcacacagagacactaatCTCTCATCCAGTAACGGGAATCTGGCCCTGCAACCTGATTGGTCCAGTGGTGTAGCTCCGCCCACCTCTCAGTCTGAATCAACACAAGAAGAAACAAACTACTACAAGAAATCATCAATGACATCAACGGAGGTTAATTTTAGTCAGAAACAGAAGATTATTAAAGGACAACTTCGTTTTTTTATCACCCCTGGACTCAATGTCTCCATGTCTgacaaacccaccagactccatgtaaataatcaggacttttagcgtgtatatagacagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggactttcatcatcgtaaaacacacttcattcaaagtggacagaaactaaataaaactaccaaaagccgtcttggttcatctttccactgttccaacaatcaccactctggtttggttgaaataaacccttaattcacccatttacatgtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacatgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctaaccacttaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtgggtttgtcAGACATGGAGACATTGAGTCCagggtgataaaaaaaaaaaacgaagttGTCCTTTAATAATCTTCTGTTTCTGACTAAAATTAACCTCCGTTGATGTCATTGATGATTTCTTGTAGTAGTTTGTTTCTTCTTGTGTTGATTCAGACTGAGAGGTGGGCGGAGCTACACCACTGGACCAATCAGGTTGCAGGGCCAGATTCCCGTTACTGGATGAGAGattagtgtctctgtgtgaagtctctctctctgtctgtgaagGAAACTGTTTATCagaatattaaaatgttttaatgtctCAAATGCTGGAATCATTGAAAGAAATCTGAATAAAGTTT
>XM_039779571.1
gtgtgaatgtgtttgttgCAGCCATGGACCACATGAACCACATGAACCACATGGACCACATGAACCACAGCGCCATGGCGGCCGACCACGCCCACCACCAACACGTCACCGTGGCCCCGCCCACAACCGGCCACGACCACGGGGGCGACcacggggggggagggggggacggGGGGGACCACGGAGGACACGGGGGCATGGCGATGACCTTCTACTTCGGCTACAACAACGTGGAGCTGCTGTTCACCGGGCTGCTCATCAACTCCCCCGGAGAGATGGTGGGGGCGTGTATCGGAGTGTTCCTATTGGCCGTCCTGTACGAGGGGCTGAAGATGGGCCGAGAGTCTCTGCTGCGCCGTAGTCAGGTCAACGTCCGCTACAACTCGATGCCCCTCCCCGGGGCAGATGGTACGGTCCTCATGGAGACGCACAAGACCGTCGGGCAGCGGAtgctaagccccgcccacttCCTGCAGACGCTGCTGCACATCCTGCAGGTGGTGGTCAGCTACTTCCTGATGCTCGTCTTCATGACCTACAACGCCTACCTCTGCATCGCCGTGGCAGCCGGCGCCGGCATGGGCTACTTCCTGTTCAGCTGGCGGAAGGCCGTGGTCGTCGACATCACCGAGCACTGCCACTAGCTAGCGCGCTAGTTAGCATCCGGTCTGAGGGGTCTGATTTCTGCTGATCACAATCAATAaaacgctaacgttagcacgcTAGCCGGCCTGGAACTACAAATCCCAGAGCGTTAGCAGCAATTTGAGTTAGCGCAGAAAACGAGACACTAAACACTAACGTCTGTAGTTAGCCGttcgtacatacatacacttgTTGGTGagttttttagttgttttttgtgAACTCCTGTTGGTTGGCgagccagccaatcacagctcaGATCATCTCAGACGGTTCTGATTGGCCAAATCCTGTCAATCGGTCTTATTTCATTTTTAGTGCCAAGATGTTAGCGTCCGTAGCTATTCTGTAGTTAGCATTGTTAGCATCTGATCAATCATAACATTGTAAACATTAGATTATCAGTTATTAGGAATGTGTTCGTTTAGTTTTGATTTATTAAACTTATTAAAACTAacattttactttgaaataacaaaataatcttCAGACAGTTTATCTTTTAAGACTGTTCACAACATCGTccttacatttctttttttaagaactCCCATTGGCCTGTGAGCCGGCCAATCGGAGCTGAGatgttttacaaaaacatcacattaattgtctttgattttcaaaataaaaaacaaactttttacagtttaaaaaaaaatatatcaatcATCACGAAGCCTTGAGTCGCTTCTTAAATCACAAACATTTCATGAATGAAATTCactaaaataactttttaacccgttttgtttttgtgtttttgtgtttttgtcgccACCGTCGGCCTTAACCCCGACACGCCACGCGCTGCCTTAACGTGGCGGGACGTCCTGACGCAGACTGGAGGCCAGTGTTGATCTGGAGGGAAACTTATGAACTGTTTTAGAGTCTGAGACGGAGGTCCAGGGACAGAAGACCGTTAAAGTCAAACTTCTCTAAAGGGTTTCACCCTGGACTCTCTGTCCCCATGTGTCTGATGGGACAACAATCTGaacctggtccagtattaaaccagaaccaggctgtaatgtaaccctacaggactaatgttcagcagcagttagagtccactaaaacccaccagactccatgtaaataatcaggactttcatcatcgtaa
>XM_039779572.1
TGACAGCAGACGGTGCCTCGCAGCGCTCCGATTGGCTCGCTGGGCCTCCCATAGCCTCGGGgcctgacagccaatcagattacAGCAGGGCGTCTGGTTAGTGACCTCACGCTGTTACCCCGGTTACGGTCACTCGTGTCACCGGCTTTCAGTCGTCTCTCCGTCTCTCAGAGGAGTCCACCGCGCTTTGGGTCCCTCCGAGCCATGGACCACATGAACCACATGAACCACATGGACCACATGAACCACAGCGCCATGGCGGCCGACCACGCCCACCACCAACACGTCACCGTGGCCCCGCCCACAACCGGCCACGACCACGGGGGCGACcacggggggggagggggggacggGGGGGACCACGGAGGACACGGGGGCATGGCGATGACCTTCTACTTCGGCTACAACAACGTGGAGCTGCTGTTCACCGGGCTGCTCATCAACTCCCCCGGAGAGATGGTGGGGGCGTGTATCGGAGTGTTCCTATTGGCCGTCCTGTACGAGGGGCTGAAGATGGGCCGAGAGTCTCTGCTGCGCCGTAGTCAGGTCAACGTCCGCTACAACTCGATGCCCCTCCCCGGGGCAGATGGTACGGTCCTCATGGAGACGCACAAGACCGTCGGGCAGCGGAtgctaagccccgcccacttCCTGCAGACGCTGCTGCACATCCTGCAGGTGGTGGTCAGCTACTTCCTGATGCTCGTCTTCATGACCTACAACGCCTACCTCTGCATCGCCGTGGCAGCCGGCGCCGGCATGGGCTACTTCCTGTTCAGCTGGCGGAAGGCCGTGGTCGTCGACATCACCGAGCACTGCCACTAGCTAGCGCGCTAGTTAGCATCCGGTCTGAGGGGTCTGATTTCTGCTGATCACAATCAATAaaacgctaacgttagcacgcTAGCCGGCCTGGAACTACAAATCCCAGAGCGTTAGCAGCAATTTGAGTTAGCGCAGAAAACGAGACACTAAACACTAACGTCTGTAGTTAGCCGttcgtacatacatacacttgTTGGTGagttttttagttgttttttgtgAACTCCTGTTGGTTGGCgagccagccaatcacagctcaGATCATCTCAGACGGTTCTGATTGGCCAAATCCTGTCAATCGGTCTTATTTCATTTTTAGTGCCAAGATGTTAGCGTCCGTAGCTATTCTGTAGTTAGCATTGTTAGCATCTGATCAATCATAACATTGTAAACATTAGATTATCAGTTATTAGGAATGTGTTCGTTTAGTTTTGATTTATTAAACTTATTAAAACTAacattttactttgaaataacaaaataatcttCAGACAGTTTATCTTTTAAGACTGTTCACAACATCGTccttacatttctttttttaagaactCCCATTGGCCTGTGAGCCGGCCAATCGGAGCTGAGatgttttacaaaaacatcacattaattgtctttgattttcaaaataaaaaacaaactttttacagtttaaaaaaaaatatatcaatcATCACGAAGCCTTGAGTCGCTTCTTAAATCACAAACATTTCATGAATGAAATTCactaaaataactttttaacccgttttgtttttgtgtttttgtgtttttgtcgccACCGTCGGCCTTAACCCCGACACGCCACGCGCTGCCTTAACGTGGCGGGACGTCCTGACGCAGACTGGAGGCCAGTGTTGATCTGGAGGGAAACTTATGAACTGTTTTAGAGTCTGAGACGGAGGTCCAGGGACAGAAGACCGTTAAAGTCAAACTTCTCTAAAGGGTTTCACCCTGGACTCTCTGTCCCCATGTGTCTGATGGGACAACAATCTGaacctggtccagtattaaaccagaaccaggctgtaatgtaaccctacaggactaatgttcagcagcagttagagtccactaaaacccaccagactccatgtaaataatcaggactttcatcatcgtaa

Function

symbol description
slc31a1 Predicted to enable copper ion transmembrane transporter activity. Acts upstream of or within cellular response to estrogen stimulus; hypotonic salinity response; and response to copper ion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in gill; gut; liver; locus coeruleus; and yolk syncytial layer. Orthologous to human SLC31A1 (solute carrier family 31 member 1).

NR:

description
high affinity copper uptake protein 1 isoform X1

GO:

id name namespace
GO:0042539 hypotonic salinity response biological_process
GO:0046688 response to copper ion biological_process
GO:0035434 copper ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005375 copper ion transmembrane transporter activity molecular_function

KEGG:

id description
K14686 SLC31A1, CTR1; solute carrier family 31 (copper transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU244017 False 1324 lncRNA 0.39 3 34282844 34308794
XM_039779571.1 False 1768 mRNA 0.49 4 34302660 34307978
XM_039779572.1 True 1949 mRNA 0.50 5 34300493 34307978

Neighbor

gene id symbol gene type direction distance location
LOC120545262 NA coding upstream 236220 33997411 ~ 34046624 (+)
LOC120545261 NA coding upstream 333593 33936243 ~ 33949251 (+)
LOC120545095 NA coding upstream 376682 33899181 ~ 33906162 (+)
LOC120545260 NA coding upstream 383787 33894650 ~ 33899057 (+)
LOC120545259 NA coding upstream 403185 33872512 ~ 33879659 (+)
wdr36 wdr36 coding downstream 23527 34332321 ~ 34355356 (+)
LOC120545317 NA coding downstream 263025 34571819 ~ 34948439 (+)
fktn fktn coding downstream 469060 34777854 ~ 34797178 (+)
si:ch211-202f5.2 NA coding downstream 541807 34850601 ~ 34851604 (+)
LOC120545265 man2a1 coding downstream 677876 34986670 ~ 35023782 (+)
G180159 NA non-coding upstream 20666 34258173 ~ 34262178 (+)
LOC120545350 NA non-coding upstream 71359 34209549 ~ 34211485 (+)
LOC120545347 NA non-coding upstream 76990 34198447 ~ 34205854 (+)
G180112 NA non-coding upstream 103906 34105491 ~ 34178938 (+)
G180128 NA non-coding upstream 118980 34163586 ~ 34163864 (+)
G180163 NA non-coding downstream 1817 34310611 ~ 34311279 (+)
G180166 NA non-coding downstream 34499 34343293 ~ 34348784 (+)
G180174 NA non-coding downstream 162615 34471409 ~ 34473459 (+)
G180194 NA non-coding downstream 204952 34513746 ~ 34540775 (+)
G180197 NA non-coding downstream 233863 34542657 ~ 34544486 (+)
G180043 NA other upstream 443457 33838192 ~ 33839387 (+)
G180040 NA other upstream 457506 33824342 ~ 33825338 (+)
dmtn LOC102797496,LOC102303313,LOC101469122,LOC102075582 other upstream 537651 33708725 ~ 33745193 (+)
G179997 LOC102306450 other upstream 958779 33270996 ~ 33324065 (+)
abraxas1 fam175a other upstream 1084887 33190021 ~ 33197957 (+)
slc25a46 slc25a46,LOC102789456 other downstream 9799 34318593 ~ 34329263 (+)
G180199 NA other downstream 248788 34557582 ~ 34560385 (+)
G180201 NA other downstream 256086 34564880 ~ 34565952 (+)
G180213 fktn other downstream 407492 34716286 ~ 34803750 (+)
G180216 NA other downstream 498464 34807258 ~ 34814910 (+)

Expression


Co-expression Network