RNA id: TU244017


Basic Information

Item Value
RNA id TU244017
length 1324
lncRNA type sense_over
GC content 0.39
exon number 3
gene id slc31a1
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 34282844 ~ 34308794 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGAGTTTCTTCATAAACTTTATTCAGATTTCTTTCAATGATTCCAGCATTTGagacattaaaacattttaatattctGATAAACAGTTTCcttcacagacagagagagagacttcacacagagacactaatCTCTCATCCAGTAACGGGAATCTGGCCCTGCAACCTGATTGGTCCAGTGGTGTAGCTCCGCCCACCTCTCAGTCTGAATCAACACAAGAAGAAACAAACTACTACAAGAAATCATCAATGACATCAACGGAGGTTAATTTTAGTCAGAAACAGAAGATTATTAAAGGACAACTTCGTTTTTTTATCACCCCTGGACTCAATGTCTCCATGTCTgacaaacccaccagactccatgtaaataatcaggacttttagcgtgtatatagacagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggactttcatcatcgtaaaacacacttcattcaaagtggacagaaactaaataaaactaccaaaagccgtcttggttcatctttccactgttccaacaatcaccactctggtttggttgaaataaacccttaattcacccatttacatgtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacatgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctaaccacttaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtgggtttgtcAGACATGGAGACATTGAGTCCagggtgataaaaaaaaaaaacgaagttGTCCTTTAATAATCTTCTGTTTCTGACTAAAATTAACCTCCGTTGATGTCATTGATGATTTCTTGTAGTAGTTTGTTTCTTCTTGTGTTGATTCAGACTGAGAGGTGGGCGGAGCTACACCACTGGACCAATCAGGTTGCAGGGCCAGATTCCCGTTACTGGATGAGAGattagtgtctctgtgtgaagtctctctctctgtctgtgaagGAAACTGTTTATCagaatattaaaatgttttaatgtctCAAATGCTGGAATCATTGAAAGAAATCTGAATAAAGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244035 lncRNA upstream 20666 34258173 ~ 34262178 (+) True G180159
XR_005636676.1 lncRNA upstream 71359 34209549 ~ 34211485 (+) True LOC120545350
XR_005636673.1 lncRNA upstream 76990 34198447 ~ 34205854 (+) False LOC120545347
XR_005636672.1 lncRNA upstream 77139 34198447 ~ 34205705 (+) True LOC120545347
XR_005636674.1 lncRNA upstream 77139 34202180 ~ 34205705 (+) False LOC120545347
TU244039 lncRNA downstream 1817 34310611 ~ 34311279 (+) True G180163
TU244045 lncRNA downstream 34499 34343293 ~ 34346498 (+) False G180166
TU244046 lncRNA downstream 34499 34343293 ~ 34348784 (+) True G180166
TU244048 lncRNA downstream 34499 34343293 ~ 34348784 (+) False G180166
TU244047 lncRNA downstream 37542 34346336 ~ 34348784 (+) False G180166
XM_039779452.1 mRNA upstream 236220 33997411 ~ 34046624 (+) True LOC120545262
XM_039779453.1 mRNA upstream 236220 33997414 ~ 34046624 (+) False LOC120545262
XM_039779451.1 mRNA upstream 333593 33936243 ~ 33949251 (+) True LOC120545261
XM_039779085.1 mRNA upstream 376682 33899181 ~ 33906162 (+) True LOC120545095
XM_039779449.1 mRNA upstream 383787 33894650 ~ 33899057 (+) True LOC120545260
XM_039779485.1 mRNA downstream 9824 34318618 ~ 34329263 (+) True slc25a46
XM_039779456.1 mRNA downstream 23527 34332321 ~ 34355356 (+) True wdr36
XM_039779567.1 mRNA downstream 263025 34571819 ~ 34948439 (+) True LOC120545317
XM_039779491.1 mRNA downstream 469060 34777854 ~ 34797178 (+) True fktn
XM_039779578.1 mRNA downstream 541807 34850601 ~ 34851604 (+) True si:ch211-202f5.2
TU243872 other upstream 443457 33838192 ~ 33839387 (+) True G180043
TU243867 other upstream 457506 33824342 ~ 33825338 (+) False G180040
TU243868 other upstream 457506 33824342 ~ 33825338 (+) True G180040
XR_005636627.1 other upstream 538316 33708727 ~ 33744528 (+) False dmtn
TU243809 other upstream 1009633 33270996 ~ 33273211 (+) False G179997
TU244008 other downstream 9799 34318593 ~ 34328313 (+) False slc25a46
TU244006 other downstream 9854 34318648 ~ 34328313 (+) False slc25a46
TU244084 other downstream 248788 34557582 ~ 34560385 (+) True G180199
TU244088 other downstream 256086 34564880 ~ 34565952 (+) True G180201
TU244135 other downstream 407492 34716286 ~ 34803591 (+) False G180213

Expression Profile