RNA id: XM_039779567.1


Basic Information

Item Value
RNA id XM_039779567.1
length 2296
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC120545317
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 34571819 ~ 34948439 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgtctctgttcccTTTTCCCTGAAAGAAAGTTTATCTCAGCACATGATTTTGATTCAGGGCGTTTCCTTAAACAAGAATAAATAAATTCCTCCCAGCTTGTGTTGCAGTTATGTTCTTCGCTCTGTTGCAGGATTTAGATTTAGAGAACGTCTCCTCTCATGGTGGATATCTGTTTTATTTCACTTTCCTCCGTCTGGAGCTCCAGCTGAAGTGTGATTTAAAGTCAGCTTCTTCATCTCTCTGAAGAGGAGATCTCAACACTTCAGGAGGACCAGGAGACCTTAAGATGTCTGCAAAACCAAGAACAGATAGCAAAGACCTCCCTCCTGATCTGTCTGAATTCATGGTCAAACTCAAAGAACATGCAGCTTCATTCATCAGAGAGTTTGACAGCAGTGAACACAGGATGACACAGATTGTTGGAGAGTTTAGGGAGATTGCTGATAAATTCCAAAAGAGGCAGGAGAGAACAGGTACAGTCAGAACAGCAGGAACTGTTGCTGGAGGAGTAGGAATAGGACTCCTGTTCCTTGCAGCTCCGCTCACTGGGGGGGCTAGtttagtagcagcagcagcaggagtagCTGcaacagcaggaggaggagctgtGCTTTATGgtgtaaatgaaacaaaaacaaggaaAGAGATCGAAagtgcaaagaaagaagaagagctgGGGAAAGACTTCATGATGATCGTTGAACGGATGAAGAAGGACCTGGAAGAAATAAAGAAGATGTGTGAGAAGTTGGAGCAAAGATCAGCTGAAGATCAGGCTGGAAACATTCTGACACACATGGAGGAGTTTCGGGGGATTCTGAGAGAAGTTTCTGGAGATAAAAGAGGAGAAATCCCCCATCTTTGTAGCAAGATGATTGAAGACTTTGAAAAGATGAAGAAAGAACTCAAAGCCTTCACAGAAAAATAAAGGAAGCAACATGCATTATTAACATCATTGACTTCAACCTGGATTGATATTATTATTCATATAATGTGGGTATTGCAAATCCTTTTATTTTTGGTTCCTTTAATAGTTCGGAAATGTTATCTTTTAAAATATGTGATCCAAAATTCAATCCAAATTGCTGTGTAATCATTTATTGCCACCTCCCTTATTCTAACACCTGTTTTCTTAATGAGTTTTCTGATTAACTATCCTTCCTTGTGCTTAAGTTTGATAGGGTCATTAAAGTTGGTGATTTTATAAAGATTGACAATCCTTCCAATCGATTCACTAttgactttttaaatgtatgtacagtaagtCTTTTAACCTTGTGCAGTATGTCTCTGGCCCATCACATAAGCATGGACACACCCTTAACCTATATCTAAAGGACTCTTTACAGTCGCTGCTCCCGACTTGTCGCAcgacaatgtaatgtaaaaatgacgtagatctcacTAGCACGCCAGGATTTTGAATGTGCGTCCATTTTTTTCAGCAGAGCGcaacaaacaggaaacagcaagCATGAACGAgttctctcttgtaaacttccTGGGTTAAGAGGAggtcttttatggtgaatgaaaggcctgatcccaccaagtagctcatccaatTGTTGTGCAGACATTCTGAAGTATTCAAAGTGCTTCTCTTCGTCTATCATCCTCATTTGTTTCACCAGGATATTGAACTCACCGTATTTATCTCAGCCGTTATTCAAAGGACGAACATCCCACCTTCTTCTTCGTCGTTTCTTTGCAAGCAGGCTCAAAAGCAGCTGTTCTTCCTCCTCCATTGACTCCAATATCATCTCAGCCACTGTTGACATTGTCGGGAATGGCGAGTATACCGCAATGTGATGACGAGAACAGAGTCTGTCTTTGTATCAGAGGATTCTGACACGAGTTTCTGAACTGGCAGGAAGGATTAAAGTAGTTTTGTCTGCAGCTGTAAAAGTGATGAGTTCTGTTCTGTTATTGCTCAATGTGAAATTCTTCAGAGTAACTGCGACCCCTGACGATTAGGAAAAGTTAGTAAACTCCATCATCCAGTCAGCTGATCTCTGTCAGGAGGTCGTTGTCAAGTTTGATCAGATGAAGGAAGAACTCAAAGACTTCAGTGTAAAGTAAAGATAGAAGCAGCAGGAGAAGAAAAAGGACTGGTTCACACTGAAACTGCTGACTACCTGTTAGtgtttaatcatttattttaccaaCTGGACTTTATGTAACTGAATCAGATGAACAATAATACTTTATGATATTTGATATGTTGGAATGTTGAATAATAAATCTCACTCACTGTTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244082 lncRNA upstream 22897 34545326 ~ 34548922 (+) True G180198
TU244081 lncRNA upstream 27333 34542657 ~ 34544486 (+) True G180197
TU244077 lncRNA upstream 31044 34513746 ~ 34540775 (+) True G180194
TU244057 lncRNA upstream 98360 34471409 ~ 34473459 (+) True G180174
TU244046 lncRNA upstream 223035 34343293 ~ 34348784 (+) True G180166
TU244250 lncRNA downstream 9869 34958308 ~ 34958827 (+) True G180271
TU244252 lncRNA downstream 16598 34965037 ~ 34965484 (+) True G180273
TU244253 lncRNA downstream 17173 34965612 ~ 34968768 (+) True G180274
TU244259 lncRNA downstream 38711 34987150 ~ 34987669 (+) True G180278
TU244261 lncRNA downstream 42688 34991127 ~ 35022075 (+) True G180280
XM_039779456.1 mRNA upstream 216463 34332321 ~ 34355356 (+) True wdr36
XM_039779485.1 mRNA upstream 242556 34318618 ~ 34329263 (+) True slc25a46
XM_039779572.1 mRNA upstream 263841 34300493 ~ 34307978 (+) True slc31a1
XM_039779571.1 mRNA upstream 263841 34302660 ~ 34307978 (+) False slc31a1
XM_039779452.1 mRNA upstream 525195 33997411 ~ 34046624 (+) True LOC120545262
XM_039779455.1 mRNA downstream 38231 34986670 ~ 35023782 (+) True LOC120545265
XM_039779470.1 mRNA downstream 186032 35134471 ~ 35143485 (+) True LOC120545273
XM_039779469.1 mRNA downstream 256642 35205081 ~ 35232148 (+) True LOC120545272
XM_039779472.1 mRNA downstream 311757 35260196 ~ 35608119 (+) False LOC120545274
XM_039779473.1 mRNA downstream 318798 35267237 ~ 35608119 (+) True LOC120545274
TU244088 other upstream 5867 34564880 ~ 34565952 (+) True G180201
TU244084 other upstream 11434 34557582 ~ 34560385 (+) True G180199
TU244008 other upstream 243506 34318593 ~ 34328313 (+) False slc25a46
TU244006 other upstream 243506 34318648 ~ 34328313 (+) False slc25a46
TU243872 other upstream 732432 33838192 ~ 33839387 (+) True G180043
TU244245 other downstream 4625 34953064 ~ 34955966 (+) True G180268
TU244390 other downstream 902483 35850922 ~ 36018072 (+) False G180366
TU244424 other downstream 1021327 35969766 ~ 35973061 (+) True G180382
TU244438 other downstream 1109867 36058306 ~ 36058736 (+) False LOC120545305
TU244460 other downstream 1174641 36123080 ~ 36125385 (+) False G180410

Expression Profile