RNA id: XM_039779451.1


Basic Information

Item Value
RNA id XM_039779451.1
length 1903
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC120545261
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 33936243 ~ 33949251 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGACcaggacttttaaaaacacagAAAACTCACAAGGTGCTCCATCCTCAACTCCTGGGAAGccgttaccatggcaacGAACACATCATCCAAGTATGACTACATCCACAACAAAGTTCTTATCCAATTAGGATGTCCTGCTGTCTACCAGCTGAAACCAAAGAAAGAGAACATTGGAACTCTGACTAGAATGACTCTTGGtgaaaaaaatccaaacaagcaaaacaaaaccatCTTACTTGTTGGTGAAACAGGAGCAGGAAAATCTACTCTGATCAACGCTCTGGTCAACTACGCCATGGGAGTGAAGTGGGAGGATGATGTCTGGTTTCAGATCGTAGAAGACGAGAAGAGAAGTCAATCAGAAAGTCAGACATCAGATGTGATGGTGTACCAGATCTTTGGTTTTGAAGGTAAACCTCTGCCCTACTCTCTGACCATCATCGATACTCCTGGATATGGAGACATCAGAGGGATCGAatatgatgacatcatcaggcaAAGATTATTAGACTTGTTCCAGTCAGAAGATGGAGTTCATGAGATTAATGCAGTGGGTCTGGTGATGAAAGGGAGTGAGAATCGCCTGAGTGACCGACTGAGGTACATCTTTGATTCAGTGATCTCTCCGTTTGGAAAAAACATGGAGAAGAACATTGTCGccctcatcacacactcagatGGTGTGACAGCTGAAAATGTTCTGAAAGCTCTCAAGGAGGCAAACATTAAATGTGCCAAAGATGAAGATGGTGATACTGTTCATTTTATGTTCAACAACCGCCAGACAatacagaaaacaaagaaaaataatgttgCTCTAAAAAGTGCATGGGACTTAACAATGGACCAAATAAGTCAGTTTGCTGATTTCCTGACCAAACAATCCCCTCAAAGCCTGATGACAACTATTGAAGTTATGAAATACCAAACCAGACTGACAGCCTGCatcaacaacctgcaggacagAATCAAGTTGATTGATCTAAAACAGACAGAAATTCAACAGACTCAGGAAGCTctgaagaaacatgaagaagAGATGAAGAACAATGAGAAGTTCACTGTAGAAGTTGATGAGCCCtacaaagttaaacaaaaaGTCGGCAGAGAGAGGAGGTGGTGGGCACTTGGGTTAAATTATGGAGGAGCTGTCTGCTGTACTGTCTGTGAGGAGAACTGTCACTATCCATGCACACTGGCCTGGTATCCAAAACACTGTGAGGTCATAAAAGATGGCCGCTGCACTGTCTGTACCGGGAAGTGTCCTGTATCAGTTCATGTGAAGGAAGAACAGTGCATTAACTGTGCGGGTAAGTGTTCAGATGAATCAAGTCATGTCAAAACCCCCTGGATCTATGTGACCAAGACAAGGAAAGTTCAGAAGACCCTGAAAGAAATGAAGGAGAAGTATGAAAAGATCAAAGCAGGAGAGGAGGACAAGTCAAGCCTTTTTGAAACTCttcaaaaaaacatcaaagaacttcagaaagaaaaagatCGGTTGTTGGCAGGAGGTGAGATAAAGTCGAGACTTTTGGAAACTCTTGAGAACAACATGGATGAActtcagaaagaaaaagatCAGTGGTTGGAGGAGTCCTTTCAGCATGTTGTCAAACTGAAGCAGATCGCCCTGAATGTTAATTCACTGTCCACTCATGTCCACTTGGACTTCCTGATTGAGAAGATGAAGGAGAAAGGAgacacagagaagaagaagaaactggAAGAGATGCAGAGTCAAATGGTTAAAGATGAAGGAATCAAGGCAGCGATGCGCTACGGGTTTGGTAAACTAAGATAAGCAGTTGGTAAAGAAGTAACCTAGTGATGATGtagatcagtggttctcaaccttttttgtgccagcgcccccctatccattatcccggtccctaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243912 lncRNA upstream 73699 33862238 ~ 33862544 (+) True G180079
TU243882 lncRNA upstream 109141 33772725 ~ 33827102 (+) True G180052
TU243866 lncRNA upstream 179065 33704913 ~ 33757178 (+) True G180039
TU243937 lncRNA downstream 14856 33964107 ~ 33978242 (+) True G180095
TU243942 lncRNA downstream 27809 33977060 ~ 33979397 (+) False G180098
TU243940 lncRNA downstream 29436 33978687 ~ 33982151 (+) True G180098
TU243941 lncRNA downstream 29436 33978687 ~ 33982151 (+) False G180098
TU243944 lncRNA downstream 33122 33982373 ~ 33982825 (+) True G180100
XM_039779085.1 mRNA upstream 30081 33899181 ~ 33906162 (+) True LOC120545095
XM_039779449.1 mRNA upstream 37186 33894650 ~ 33899057 (+) True LOC120545260
XM_039779447.1 mRNA upstream 56584 33872512 ~ 33879659 (+) True LOC120545259
XM_039779448.1 mRNA upstream 56584 33872577 ~ 33879659 (+) False LOC120545259
XM_039778971.1 mRNA upstream 87360 33843174 ~ 33848883 (+) True LOC120545034
XM_039779452.1 mRNA downstream 48160 33997411 ~ 34046624 (+) True LOC120545262
XM_039779453.1 mRNA downstream 48163 33997414 ~ 34046624 (+) False LOC120545262
XM_039779572.1 mRNA downstream 351242 34300493 ~ 34307978 (+) True slc31a1
XM_039779571.1 mRNA downstream 353409 34302660 ~ 34307978 (+) False slc31a1
XM_039779485.1 mRNA downstream 369367 34318618 ~ 34329263 (+) True slc25a46
TU243872 other upstream 96856 33838192 ~ 33839387 (+) True G180043
TU243867 other upstream 110905 33824342 ~ 33825338 (+) False G180040
TU243868 other upstream 110905 33824342 ~ 33825338 (+) True G180040
XR_005636627.1 other upstream 191715 33708727 ~ 33744528 (+) False dmtn
TU243809 other upstream 663032 33270996 ~ 33273211 (+) False G179997
TU244008 other downstream 369342 34318593 ~ 34328313 (+) False slc25a46
TU244006 other downstream 369397 34318648 ~ 34328313 (+) False slc25a46
TU244084 other downstream 608331 34557582 ~ 34560385 (+) True G180199
TU244088 other downstream 615629 34564880 ~ 34565952 (+) True G180201
TU244135 other downstream 767035 34716286 ~ 34803591 (+) False G180213

Expression Profile