RNA id: TU243882


Basic Information

Item Value
RNA id TU243882
length 451
lncRNA type sense_over
GC content 0.51
exon number 3
gene id G180052
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 33772725 ~ 33827102 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTCTCTCCGACGAAGGGCAGCGACCAGGTGAAGACGTCCATGAAGTTGGGCAGCCAGTACGGGTGGGGGGAGCAGTTAAACTGCCGGATGTTCATCACATTATTCTCATATTTCAGCACCGCCGCTgaggacaaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacagacagacacacacacagacagagacagacacacacacacacacacacacacacacacacacacagagacacacacagacacacagacacacacacagacacacacacacacacacacacacacagagacacacacacacacacacacacacacacacacacacacacacacacacacacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243866 lncRNA upstream 15547 33704913 ~ 33757178 (+) True G180039
XR_005636752.1 lncRNA upstream 66468 33705510 ~ 33706257 (+) True LOC120545890
TU243875 lncRNA upstream 66509 33705529 ~ 33706216 (+) False LOC120545890
TU243845 lncRNA upstream 167427 33604971 ~ 33605298 (+) True G180026
TU243829 lncRNA upstream 426731 33345394 ~ 33345994 (+) True G180010
TU243912 lncRNA downstream 35136 33862238 ~ 33862544 (+) True G180079
TU243937 lncRNA downstream 137005 33964107 ~ 33978242 (+) True G180095
TU243942 lncRNA downstream 149958 33977060 ~ 33979397 (+) False G180098
TU243940 lncRNA downstream 151585 33978687 ~ 33982151 (+) True G180098
TU243941 lncRNA downstream 151585 33978687 ~ 33982151 (+) False G180098
XM_039779081.1 mRNA upstream 22963 33748323 ~ 33749762 (+) True LOC120545091
XM_039779121.1 mRNA upstream 27532 33708728 ~ 33745193 (+) True dmtn
XM_039779122.1 mRNA upstream 27532 33708729 ~ 33745193 (+) False dmtn
XM_039779124.1 mRNA upstream 27532 33708731 ~ 33745193 (+) False dmtn
XM_039779123.1 mRNA upstream 35071 33708725 ~ 33737654 (+) False dmtn
XM_039778971.1 mRNA downstream 16072 33843174 ~ 33848883 (+) True LOC120545034
XM_039779447.1 mRNA downstream 45410 33872512 ~ 33879659 (+) True LOC120545259
XM_039779448.1 mRNA downstream 45475 33872577 ~ 33879659 (+) False LOC120545259
XM_039779449.1 mRNA downstream 67548 33894650 ~ 33899057 (+) True LOC120545260
XM_039779085.1 mRNA downstream 72079 33899181 ~ 33906162 (+) True LOC120545095
XR_005636627.1 other upstream 28197 33708727 ~ 33744528 (+) False dmtn
TU243808 other upstream 448660 33270996 ~ 33324065 (+) True G179997
TU243809 other upstream 499514 33270996 ~ 33273211 (+) False G179997
TU243665 other upstream 574768 33190119 ~ 33197957 (+) True abraxas1
TU243663 other upstream 574889 33190119 ~ 33197836 (+) False abraxas1
TU243872 other downstream 11090 33838192 ~ 33839387 (+) True G180043
TU244008 other downstream 491491 34318593 ~ 34328313 (+) False slc25a46
TU244006 other downstream 491546 34318648 ~ 34328313 (+) False slc25a46
TU244084 other downstream 730480 34557582 ~ 34560385 (+) True G180199
TU244088 other downstream 737778 34564880 ~ 34565952 (+) True G180201

Expression Profile