RNA id: TU243665


Basic Information

Item Value
RNA id TU243665
length 610
RNA type TUCP
GC content 0.54
exon number 5
gene id abraxas1
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 33190021 ~ 33197957 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTATCAACAAGCAGCATGGCGGAGCCGACTGTCCGGATGTCTGGGATTGTGTTAGCTTCTCTAATGTTCCAGCATGTTAACAGTGATTCGGACGTGgaaggTCTGATTCTAGGAGAGAGTAAGTTCGAGGAGCAGATCACCATCAGCGACTCTCAGGCCGACCACATCCACATCGAGGAAATCTACAACATCCAGAAGCACATGGCCTGCCCCAGACTCAACCActtctACAACAGTGTAGGAGAAGTAAACATGGACGTTGTGAAGAATATCCTGGCCGACAATAAGCAGGAGAGCGTGATTGGCTGGTACCGACAGCGCAGGAACTCGGGCCAGCAGATGACGTTCAGAGAGAAGCTGGTCCACGAGAAGCTGAAGGCGTCTCTGTCCAACCCTCACATGATCTTCGTGCTGCTCACGCCCAGCAGGCTGACCGCTACGGGCGCCACGCACCGCACCGAGTACGCCGCGTTCATCTCCCgcagcaggtacacacacacacacacacacacacacacacagcaggtacacacaacatcacacacacacacacacaacatcacacgcggcaggtacacacacaacaccacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243685 lncRNA upstream 548 33189247 ~ 33189571 (+) True G179910
TU243677 lncRNA upstream 16000 33145946 ~ 33174119 (+) True G179905
TU243676 lncRNA upstream 58476 33130849 ~ 33131643 (+) True G179904
TU243671 lncRNA upstream 72360 33115765 ~ 33117759 (+) False G179903
TU243800 lncRNA downstream 58459 33256416 ~ 33259022 (+) True G179992
TU243823 lncRNA downstream 107187 33305144 ~ 33314650 (+) True G180006
TU243824 lncRNA downstream 107310 33305267 ~ 33314650 (+) False G180006
TU243829 lncRNA downstream 147437 33345394 ~ 33345994 (+) True G180010
TU243845 lncRNA downstream 407014 33604971 ~ 33605298 (+) True G180026
XM_039779079.1 mRNA upstream 80648 33103891 ~ 33109471 (+) True mrps18c
XM_039780257.1 mRNA upstream 113980 33073364 ~ 33076139 (+) True LOC120545707
XM_039780253.1 mRNA upstream 135235 33052912 ~ 33054884 (+) True LOC120545701
XM_039780251.1 mRNA upstream 153887 33033850 ~ 33036232 (+) True LOC120545698
XM_039780252.1 mRNA upstream 159802 33027615 ~ 33030317 (+) True LOC120545699
XM_039780296.1 mRNA downstream 73279 33271236 ~ 33273527 (+) True LOC120545739
XM_039780297.1 mRNA downstream 123410 33321367 ~ 33325749 (+) True LOC120545741
XM_039780298.1 mRNA downstream 123411 33321368 ~ 33325749 (+) False LOC120545741
XM_039780170.1 mRNA downstream 367397 33565354 ~ 33567283 (+) True LOC120545637
XM_039779943.1 mRNA downstream 418080 33616037 ~ 33656759 (+) True xpo7
TU243673 other upstream 2491 33115765 ~ 33187628 (+) False G179903
TU243616 other upstream 206067 32964961 ~ 32984052 (+) True LOC120545086
TU243411 other upstream 741304 32442055 ~ 32448815 (+) True LOC120545732
TU243298 other upstream 1090577 32089428 ~ 32099542 (+) False G179655
TU243292 other upstream 1097988 32089428 ~ 32092131 (+) False G179655
TU243808 other downstream 73039 33270996 ~ 33324065 (+) True G179997
TU243809 other downstream 73039 33270996 ~ 33273211 (+) False G179997
XR_005636627.1 other downstream 510770 33708727 ~ 33744528 (+) False dmtn
TU243867 other downstream 626385 33824342 ~ 33825338 (+) False G180040
TU243868 other downstream 626385 33824342 ~ 33825338 (+) True G180040

Expression Profile